1. Data on differentially expressed proteins in rock inhibitor-treated human trabecular meshwork cells using SWATH-based proteomics
- Author
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Sze Wan Shan, Chi Wai Do, Chi Ho To, W. Daniel Stamer, Hoi Lam Li, and Thomas Chuen Lam
- Subjects
genetic structures ,Glaucoma ,Peptide ,Protein profile ,lcsh:Computer applications to medicine. Medical informatics ,Proteomics ,03 medical and health sciences ,0302 clinical medicine ,Biochemistry, Genetics and Molecular Biology ,medicine ,Trabecular meshwork ,lcsh:Science (General) ,Protein kinase A ,Rho-associated protein kinase ,Swath ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Multidisciplinary ,medicine.disease ,Cell biology ,glaucoma ,medicine.anatomical_structure ,chemistry ,Proteome ,lcsh:R858-859.7 ,Rock inhibitor ,sense organs ,030217 neurology & neurosurgery ,lcsh:Q1-390 - Abstract
Rho-associated coiled coil-forming protein kinase (ROCK) inhibitors represent a novel class of anti-glaucoma drugs because of their ocular hypotensive effects. However, the underlying mechanisms responsible for lowering intraocular pressure (IOP) are not completely clear. The protein profile changes in primary human trabecular meshwork (TM) cells after two days treatment with a ROCK inhibitor were studied using label-free SWATH acquisition. These results provided significant data of key protein candidates underlying the effect of ROCK inhibitor. Using the sensitive label-free mass spectrometry approach with data-independent acquisition (SWATH-MS), we established a comprehensive TM proteome library. All raw data generated from IDA and SWATH acquisitions were uploaded and published in the Peptide Atlas public repository (http://www.peptideatlas.org/) for general release (Data ID PASS01254).
- Published
- 2020