6 results on '"Berkley A. Lynch"'
Search Results
2. Bone-targeted Src SH2 inhibitors block Src cellular activity and osteoclast-mediated resorption
- Author
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Roland Baron, Virginia A. Jacobsen, Shelia Violette, Catherine Bartlett, E Antoine, Craig S. Takeuchi, C. Bardelay, Dominique Lesuisse, Tomi K. Sawyer, Richard J. Rickles, David C. Dalgarno, Michael G. Yang, William C. Shakespeare, Berkley A. Lynch, Regine S. Bohacek, Karina J. Macek, Wei Guan, Susan Adams, Eliane Mandine, Jeremy Smith, Manfred Weigele, and M.R van Schravendijk
- Subjects
Histology ,Physiology ,Endocrinology, Diabetes and Metabolism ,Molecular Sequence Data ,Osteoclasts ,Ligands ,Tritium ,SH2 domain ,src Homology Domains ,Mice ,Radioligand Assay ,Two-Hybrid System Techniques ,Animals ,Humans ,Amino Acid Sequence ,Bone Resorption ,Enzyme Inhibitors ,Cell Line, Transformed ,Mammals ,Tyrosine-protein kinase CSK ,Diphosphonates ,biology ,Binding protein ,Ligand binding assay ,Fibroblasts ,Actins ,Rats ,Resorption ,src-Family Kinases ,Biochemistry ,Dentin ,biology.protein ,Osteoporosis ,Rabbits ,Tyrosine kinase ,Cortactin ,Proto-oncogene tyrosine-protein kinase Src - Abstract
Src, a nonreceptor tyrosine kinase, is an important regulator of osteoclast-mediated resorption. We have investigated whether compounds that bind to the Src SH2 domain inhibit Src activity in cells and decrease osteoclast-mediated resorption. Compounds were examined for binding to the Src SH2 domain in vitro using a fluorescence polarization binding assay. Experiments were carried out with compounds demonstrating in vitro binding activity (nmol/L range) to determine if they inhibit Src SH2 binding and Src function in cells, demonstrate blockade of Src signaling, and lack cellular toxicity. Cell-based assays included: (1) a mammalian two-hybrid assay; (2) morphological reversion and growth inhibition of cSrcY527F-transformed cells; and (3) inhibition of cortactin phosphorylation in csk-/- cells. The Src SH2 binding compounds inhibit Src activity in all three of these mechanism-based assays. The compounds described were synthesized to contain nonhydrolyzable phosphotyrosine mimics that bind to bone. These compounds were further tested and found to inhibit rabbit osteoclast-mediated resorption of dentine. These results indicate that compounds that bind to the Src SH2 domain can inhibit Src activity in cells and inhibit osteoclast-mediated resorption.
- Published
- 2001
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3. Simultaneous Assay of Src SH3 and SH2 Domain Binding Using Different Wavelength Fluorescence Polarization Probes
- Author
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Ian A. MacNeil, Berkley A. Lynch, Marie Rose van Schravendijk, Richard J. Rickles, Minor Charles A, Kara A. Loiacono, Mary K. Ram, T. B. Phillips, Susan Adams, Raji Sundaramoorthi, and Dennis A. Holt
- Subjects
animal structures ,Protein Conformation ,Biophysics ,Fluorescence Polarization ,Peptide ,Biology ,SH2 domain ,Biochemistry ,SH3 domain ,Oncogene Protein pp60(v-src) ,src Homology Domains ,Escherichia coli ,Animals ,Humans ,Molecular Biology ,Fluorescent Dyes ,chemistry.chemical_classification ,Retinoblastoma-Like Protein p130 ,Ligand binding assay ,Proteins ,Cell Biology ,Phosphoproteins ,Recombinant Proteins ,Rats ,Crk-Associated Substrate Protein ,chemistry ,Signal transduction ,Tyrosine kinase ,Fluorescence anisotropy ,Protein Binding ,Proto-oncogene tyrosine-protein kinase Src - Abstract
pp60 c-src is a prototypical nonreceptor tyrosine kinase and may play a role in diseases as diverse as cancer and osteoporosis. In Src, the SH3 domain (Src homology 3) binds proteins at specific, proline-rich sequences, while the SH2 domain (Src homology 2) binds phosphotyrosine-containing sequences. Inhibition of Src SH3 and SH2 domain function is of potential therapeutic value because of their importance in signaling pathways involved in disease states. We have developed dual-wavelength fluorescent peptide probes for both the Src SH3 and the Src SH2 domains, which allow the simultaneous measurement of compounds binding to each domain in assays based on the technique of fluorescence polarization. We demonstrate the utility of these probes in a dual-binding assay (suitable for high-throughput screening) to study the interactions of various peptides with these domains, including a sequence from the rat protein p130 CAS which has been reported to bind simultaneously to both Src SH3 and SH2 domains. Utilizing this dual-binding assay, we confirm that sequences from p130 CAS can simultaneously bind Src via both its SH3 and its SH2 domains. We also use the dual-binding assay as an internal control to identify substances which inhibit SH3 and SH2 binding via nonspecific mechanisms.
- Published
- 1999
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4. Structure-activity relationships of a novel class of Src SH2 inhibitors
- Author
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Kara A. Loiacono, Ian A. MacNeil, Berkley A. Lynch, Taylor Merry, Chi B. Vu, Ukti Mani, Vaibhav Varkhedkar, John L. Buchanan, Dennis A. Holt, Selvaluxmi G. Pradeepan, Hilary R. Plake, Michael Yang, Evelyn G. Corpuz, and Choi Lai Tiong
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chemistry.chemical_classification ,Tetrapeptide ,Chemistry ,Stereochemistry ,Organic Chemistry ,Clinical Biochemistry ,Pharmaceutical Science ,SH2 domain ,Biochemistry ,Chemical synthesis ,In vitro ,src Homology Domains ,Structure-Activity Relationship ,Thiazoles ,Enzyme ,Drug Discovery ,Side chain ,Molecular Medicine ,Structure–activity relationship ,Molecular Biology ,Proto-oncogene tyrosine-protein kinase Src - Abstract
The structure-activity relationships (SAR) of a novel class of Src SH2 inhibitors are described. Variation at the pY+1 and pY+3 side chain positions using 2,4- and 2,5-substituted thiazoles and 1,2,4-oxadiazoles as scaffolds resulted in inhibitors that bound as well as the standard tetrapeptide Ac-pYEEI-NH2.
- Published
- 1999
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5. A Fluorescence Polarization Based Src-SH2 Binding Assay
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Kara A. Loiacono, Susan Adams, Choi Lai Tiong, Berkley A. Lynch, and Ian A. MacNeil
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Proto-Oncogene Proteins pp60(c-src) ,Drug Evaluation, Preclinical ,Biophysics ,Fluorescence Polarization ,In Vitro Techniques ,Biology ,SH2 domain ,Binding, Competitive ,Biochemistry ,src Homology Domains ,Humans ,Amino Acid Sequence ,Tyrosine ,Molecular Biology ,Fluorescent Dyes ,Binding Sites ,Molecular Structure ,Ligand binding assay ,Cell Biology ,Recombinant Proteins ,Kinetics ,Drug Design ,Phosphorylation ,Signal transduction ,Oligopeptides ,Tyrosine kinase ,Fluorescence anisotropy ,Signal Transduction ,Proto-oncogene tyrosine-protein kinase Src - Abstract
The tyrosine kinase pp60c-srchas been implicated as being a potential therapeutic target in several human diseases including cancer and osteoporosis. An important region within this kinase is the SH2 domain (Src homology 2) which binds to phosphorylated tyrosine residues contained within specific peptide sequences. Homologous domains are found in a variety of cytoplasmic proteins and have been shown to be essential for controlling many important signaling pathways. Developing specific inhibitors of SH2 interactions would therefore be extremely useful for modulating a variety of signaling pathways and potentially be useful for the treatment of human disease. Current methodology for the development of organic molecules as drug leads requires the ability to test thousands of individual compounds or natural product extracts in biochemical assays. Such tests must be reproducible, simple, and versatile. This paper describes an assay based on fluorescence polarization for measuring the binding of compounds to the Src-SH2 domain. The assay is insensitive to changes in fluorescence intensity working even in solutions with moderate optical density and functions in the presence of up to 20% dimethyl sulfoxide. These features make it especially useful for high-throughput screening of both natural and synthetic compound libraries.
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- 1997
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6. Effects of Low Protein Diets or Feed Restriction on Rat Lung Glutathione and Oxygen Toxicity
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Barry L. Fanburg, Susan M. Deneke, and Berkley A. Lynch
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Male ,medicine.medical_specialty ,Antioxidant ,Low protein ,medicine.medical_treatment ,Glutathione reductase ,Medicine (miscellaneous) ,Glucosephosphate Dehydrogenase ,chemistry.chemical_compound ,Protein Deficiency ,Internal medicine ,medicine ,Animals ,Amino Acids ,Lung ,Oxygen toxicity ,Hyperoxia ,Nutrition and Dietetics ,biology ,Body Weight ,Glutathione ,Catalase ,medicine.disease ,Rats ,Oxygen ,Glutathione Reductase ,Endocrinology ,chemistry ,Toxicity ,biology.protein ,medicine.symptom ,Energy Intake - Abstract
Male rats weighing 200-250 g were fed a 25% casein diet in restricted amounts or ad libitum or one of two low protein diets (3 and 0% casein) ad libitum. Decreased tolerance to hyperoxic stress was observed only in the rats fed low protein diets. These animals had a median death time of 49-50 h compared to 58-69 h for feed-restricted or normal control groups. Death was due to accelerated development of lung edema. Changes in total lung levels of glutathione reductase, glucose-6-phosphate dehydrogenase or catalase did not correlate with oxygen sensitivity. Lung glutathione levels were related to the amount of sulfur-containing amino acids in the diet and were depressed in the feed-restricted as well as the protein-restricted groups. However, feed restriction alone did not enhance oxygen toxicity. We conclude that a decrease in lung glutathione may be partially responsible for the increased oxygen sensitivity in the protein-deficient rats, but that other factors are necessary for explanation of the relative oxygen tolerance of the feed-restricted animals with reduced levels of glutathione in the lung.
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- 1985
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