11 results on '"Lukaschuk, Elena"'
Search Results
2. Deep learning with attention supervision for automated motion artefact detection in quality control of cardiac T1-mapping
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Zhang, Qiang, Hann, Evan, Werys, Konrad, Wu, Cody, Popescu, Iulia, Lukaschuk, Elena, Barutcu, Ahmet, Ferreira, Vanessa M., and Piechnik, Stefan K.
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- 2020
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3. The Role of Coronary Blood Flow and Myocardial Edema in the Pathophysiology of Takotsubo Syndrome.
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Couch, Liam S., Thomas, Katharine E., Marin, Federico, Terentes-Printzios, Dimitrios, Kotronias, Rafail A., Chai, Jason, Lukaschuk, Elena, Shanmuganathan, Mayooran, Kellman, Peter, Langrish, Jeremy P., Channon, Keith M., Neubauer, Stefan, Piechnik, Stefan K., Ferreira, Vanessa M., De Maria, Giovanni Luigi, and Banning, Adrian P.
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- 2024
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4. Quantitative CMR population imaging on 20,000 subjects of the UK Biobank imaging study: LV/RV quantification pipeline and its evaluation
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Attar, Rahman, Pereañez, Marco, Gooya, Ali, Albà, Xènia, Zhang, Le, de Vila, Milton Hoz, Lee, Aaron M., Aung, Nay, Lukaschuk, Elena, Sanghvi, Mihir M., Fung, Kenneth, Paiva, Jose Miguel, Piechnik, Stefan K., Neubauer, Stefan, Petersen, Steffen E., and Frangi, Alejandro F.
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- 2019
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5. Association Between Recreational Cannabis Use and Cardiac Structure and Function.
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Khanji, Mohammed Y., Jensen, Magnus T., Kenawy, Asmaa A., Raisi-Estabragh, Zahra, Paiva, Jose M., Aung, Nay, Fung, Kenneth, Lukaschuk, Elena, Zemrak, Filip, Lee, Aaron M., Barutcu, Ahmet, Maclean, Edd, Cooper, Jackie, Piechnik, Stefan K., Neubauer, Stefan, and Petersen, Steffen E.
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- 2020
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6. Reference ranges for cardiac structure and function using cardiovascular magnetic resonance (CMR) in Caucasians from the UK Biobank population cohort.
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Petersen, Steffen E., Nay Aung, Sanghvi, Mihir M., Zemrak, Filip, Fung, Kenneth, Miguel Paiva, Jose, Francis, Jane M., Khanji, Mohammed Y., Lukaschuk, Elena, Lee, Aaron M., Carapella, Valentina, Young Jin Kim, Leeson, Paul, Piechnik, Stefan K., and Neubauer, Stefan
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HEART atrium ,HEART ventricles ,AGE distribution ,STATISTICAL correlation ,LEFT heart ventricle ,HEART physiology ,RIGHT heart ventricle ,MAGNETIC resonance imaging ,REFERENCE values ,RESEARCH funding ,SEX distribution ,T-test (Statistics) ,WHITE people ,DATA analysis software ,STROKE volume (Cardiac output) ,INTRACLASS correlation ,PHYSIOLOGY ,ANATOMY - Abstract
Background: Cardiovascular magnetic resonance (CMR) is the gold standard method for the assessment of cardiac structure and function. Reference ranges permit differentiation between normal and pathological states. To date, this study is the largest to provide CMR specific reference ranges for left ventricular, right ventricular, left atrial and right atrial structure and function derived from truly healthy Caucasian adults aged 45-74. Methods: Five thousand sixty-five UK Biobank participants underwent CMR using steady-state free precession imaging at 1.5 Tesla. Manual analysis was performed for all four cardiac chambers. Participants with non-Caucasian ethnicity, known cardiovascular disease and other conditions known to affect cardiac chamber size and function were excluded. Remaining participants formed the healthy reference cohort; reference ranges were calculated and were stratified by gender and age (45-54, 55-64, 65-74). Results: After applying exclusion criteria, 804 (16.²%) participants were available for analysis. Left ventricular (LV) volumes were larger in males compared to females for absolute and indexed values. With advancing age, LV volumes were mostly smaller in both sexes. LV ejection fraction was significantly greater in females compared to males (mean ± standard deviation [SD] of 61 ± 5% vs 58 ± 5%) and remained static with age for both genders. In older age groups, LV mass was lower in men, but remained virtually unchanged in women. LV mass was significantly higher in males compared to females (mean ± SD of 53 ± 9 g/m² vs 4² ± 7 g/m²). Right ventricular (RV) volumes were significantly larger in males compared to females for absolute and indexed values and were smaller with advancing age. RV ejection fraction was higher with increasing age in females only. Left atrial (LA) maximal volume and stroke volume were significantly larger in males compared to females for absolute values but not for indexed values. LA ejection fraction was similar for both sexes. Right atrial (RA) maximal volume was significantly larger in males for both absolute and indexed values, while RA ejection fraction was significantly higher in females. Conclusions: We describe age- and sex-specific reference ranges for the left ventricle, right ventricle and atria in the largest validated normal Caucasian population. [ABSTRACT FROM AUTHOR]
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- 2017
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7. Automated quality control in image segmentation: application to the UK Biobank cardiovascular magnetic resonance imaging study.
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Robinson, Robert, Valindria, Vanya V., Bai, Wenjia, Oktay, Ozan, Kainz, Bernhard, Suzuki, Hideaki, Sanghvi, Mihir M., Aung, Nay, Paiva, José Miguel, Zemrak, Filip, Fung, Kenneth, Lukaschuk, Elena, Lee, Aaron M., Carapella, Valentina, Kim, Young Jin, Piechnik, Stefan K., Neubauer, Stefan, Petersen, Steffen E., Page, Chris, and Matthews, Paul M.
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AUTOMATION ,CARDIOVASCULAR disease diagnosis ,DIGITAL image processing ,MAGNETIC resonance imaging ,QUALITY control ,RESEARCH evaluation - Abstract
Background: The trend towards large-scale studies including population imaging poses new challenges in terms of quality control (QC). This is a particular issue when automatic processing tools such as image segmentation methods are employed to derive quantitative measures or biomarkers for further analyses. Manual inspection and visual QC of each segmentation result is not feasible at large scale. However, it is important to be able to automatically detect when a segmentation method fails in order to avoid inclusion of wrong measurements into subsequent analyses which could otherwise lead to incorrect conclusions. Methods: To overcome this challenge, we explore an approach for predicting segmentation quality based on Reverse Classification Accuracy, which enables us to discriminate between successful and failed segmentations on a per-cases basis. We validate this approach on a new, large-scale manually-annotated set of 4800 cardiovascular magnetic resonance (CMR) scans. We then apply our method to a large cohort of 7250 CMR on which we have performed manual QC. Results: We report results used for predicting segmentation quality metrics including Dice Similarity Coefficient (DSC) and surface-distance measures. As initial validation, we present data for 400 scans demonstrating 99% accuracy for classifying low and high quality segmentations using the predicted DSC scores. As further validation we show high correlation between real and predicted scores and 95% classification accuracy on 4800 scans for which manual segmentations were available. We mimic real-world application of the method on 7250 CMR where we show good agreement between predicted quality metrics and manual visual QC scores. Conclusions: We show that Reverse classification accuracy has the potential for accurate and fully automatic segmentation QC on a per-case basis in the context of large-scale population imaging as in the UK Biobank Imaging Study. [ABSTRACT FROM AUTHOR]
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- 2019
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8. Automated cardiovascular magnetic resonance image analysis with fully convolutional networks.
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Bai, Wenjia, Sinclair, Matthew, Tarroni, Giacomo, Oktay, Ozan, Rajchl, Martin, Vaillant, Ghislain, Lee, Aaron M., Aung, Nay, Lukaschuk, Elena, Sanghvi, Mihir M., Zemrak, Filip, Fung, Kenneth, Paiva, Jose Miguel, Carapella, Valentina, Kim, Young Jin, Suzuki, Hideaki, Kainz, Bernhard, Matthews, Paul M., Petersen, Steffen E., and Piechnik, Stefan K.
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AUTOMATION ,CARDIOVASCULAR disease diagnosis ,DIGITAL image processing ,MAGNETIC resonance imaging ,ARTIFICIAL neural networks ,STROKE volume (Cardiac output) - Abstract
Background: Cardiovascular resonance (CMR) imaging is a standard imaging modality for assessing cardiovascular diseases (CVDs), the leading cause of death globally. CMR enables accurate quantification of the cardiac chamber volume, ejection fraction and myocardial mass, providing information for diagnosis and monitoring of CVDs. However, for years, clinicians have been relying on manual approaches for CMR image analysis, which is time consuming and prone to subjective errors. It is a major clinical challenge to automatically derive quantitative and clinically relevant information from CMR images. Methods: Deep neural networks have shown a great potential in image pattern recognition and segmentation for a variety of tasks. Here we demonstrate an automated analysis method for CMR images, which is based on a fully convolutional network (FCN). The network is trained and evaluated on a large-scale dataset from the UK Biobank, consisting of 4,875 subjects with 93,500 pixelwise annotated images. The performance of the method has been evaluated using a number of technical metrics, including the Dice metric, mean contour distance and Hausdorff distance, as well as clinically relevant measures, including left ventricle (LV) end-diastolic volume (LVEDV) and end-systolic volume (LVESV), LV mass (LVM); right ventricle (RV) end-diastolic volume (RVEDV) and end-systolic volume (RVESV). Results: By combining FCN with a large-scale annotated dataset, the proposed automated method achieves a high performance in segmenting the LV and RV on short-axis CMR images and the left atrium (LA) and right atrium (RA) on long-axis CMR images. On a short-axis image test set of 600 subjects, it achieves an average Dice metric of 0.94 for the LV cavity, 0.88 for the LV myocardium and 0.90 for the RV cavity. The mean absolute difference between automated measurement and manual measurement is 6.1 mL for LVEDV, 5.3 mL for LVESV, 6.9 gram for LVM, 8.5 mL for RVEDV and 7.2 mL for RVESV. On long-axis image test sets, the average Dice metric is 0.93 for the LA cavity (2-chamber view), 0.95 for the LA cavity (4-chamber view) and 0.96 for the RA cavity (4-chamber view). The performance is comparable to human inter-observer variability. Conclusions: We show that an automated method achieves a performance on par with human experts in analysing CMR images and deriving clinically relevant measures. [ABSTRACT FROM AUTHOR]
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- 2018
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9. Standardized image post-processing of cardiovascular magnetic resonance T1-mapping reduces variability and improves accuracy and consistency in myocardial tissue characterization.
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Carapella, Valentina, Puchta, Henrike, Lukaschuk, Elena, Marini, Claudia, Werys, Konrad, Neubauer, Stefan, Ferreira, Vanessa M., and Piechnik, Stefan K.
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CARDIAC magnetic resonance imaging , *IMAGE analysis - Abstract
Myocardial T1-mapping is increasingly used in multicentre studies and trials. Inconsistent image analysis introduces variability, hinders differentiation of diseases, and results in larger sample sizes. We present a systematic approach to standardize T1-map analysis by human operators to improve accuracy and consistency. We developed a multi-step training program for T1-map post-processing. The training dataset contained 42 left ventricular (LV) short-axis T1-maps (normal and diseases; 1.5 and 3 Tesla). Contours drawn by two experienced human operators served as reference for myocardial T1 and wall thickness (WT). Trainees (n = 26) underwent training and were evaluated by: (a) qualitative review of contours; (b) quantitative comparison with reference T1 and WT. The mean absolute difference between reference operators was 8.4 ± 6.3 ms (T1) and 1.2 ± 0.7 pixels (WT). Trainees' mean discrepancy from reference in T1 improved significantly post-training (from 8.1 ± 2.4 to 6.7 ± 1.4 ms; p < 0.001), with a 43% reduction in standard deviation (SD) (p = 0.035). WT also improved significantly post-training (from 0.9 ± 0.4 to 0.7 ± 0.2 pixels, p = 0.036), with 47% reduction in SD (p = 0.04). These experimentally-derived thresholds served to guide the training process: T1 (±8 ms) and WT (±1 pixel) from reference. A standardized approach to CMR T1-map image post-processing leads to significant improvements in the accuracy and consistency of LV myocardial T1 values and wall thickness. Improving consistency between operators can translate into 33–72% reduction in clinical trial sample-sizes. This work may: (a) serve as a basis for re-certification for core-lab operators; (b) translate to sample-size reductions for clinical studies; (c) produce better-quality training datasets for machine learning. • T1-mapping MRI is increasingly being employed as a Cardiovascular MRI technique in clinical studies and trials. • Standardisation of T1 mapping post-processing is still limited, hindering reproducibility and consistency across centres. • High-quality manual contouring of T1 maps is crucial to ensure good quality training data for machine learning algorithms. • Our training programme shows statistically significant reduction in discrepancy between operators analysing T1 maps. [ABSTRACT FROM AUTHOR]
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- 2020
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10. Standardization of T1-mapping in cardiovascular magnetic resonance using clustered structuring for benchmarking normal ranges.
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Popescu, Iulia A., Werys, Konrad, Zhang, Qiang, Puchta, Henrike, Hann, Evan, Lukaschuk, Elena, Ferreira, Vanessa M., and Piechnik, Stefan K.
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MAGNETIC resonance , *MAGNETIC flux density , *STANDARDIZATION , *QUALITY control , *K-means clustering - Abstract
Cardiovascular magnetic resonance T1-mapping is increasingly used for tissue characterization, commonly based on Modified Look-Locker Inversion recovery (MOLLI). However, there are numerous MOLLI variants with differing normal ranges. This lack of standardization presents confusion and difficulty in inter-center comparisons, hindering widespread adoption of T1-mapping. To address this, we performed a structured literature search for native left ventricular myocardial T1-mapping in healthy humans measured using MOLLI variants at 1.5 and 3 Tesla, across scanner vendors. We then used k-means clustering to structure normal MOLLI-T1 values according to magnetic field strength, and investigated correlations between common imaging parameters: repetition time (TR), echo time (TE), flip angle (FA). We analyzed data from 2207 healthy controls in 76 independent reports. Normal MOLLI-T1 standard deviations varied by 11-fold, and dependencies on TE, TR, and FA differed between 1.5 T and 3 T, thwarting meaningful T1 standardization even within a single field strength, including the use of Z-score. However, divergent MOLLI-T1 norms may be structured using data clustering. For 1.5 T, two clusters emerged: Cluster1 1.5T : T1 = 958 ± 16 ms (n = 1280); Cluster2 1.5T : T1 = 1027 ± 19 ms (n = 386). For 3 T, three clusters emerged: Cluster1 3T : T1 = 1160 ± 21 ms (n = 330); Cluster2 3T : T1 = 1067 ± 18 ms (n = 178); Cluster3 3T : T1 = 1227 ± 19 ms (n = 41). We then propose the concept of an online calculator for assigning local norms to a known MOLLI-T1 cluster, allowing benchmarking against published norms. Clustered structuring allows T1 standardization of widely-divergent MOLLI variants, benchmarking local norms (usually based on smaller samples) against published norms (larger samples). This may increase confidence and quality control in method implementation, facilitating wider clinical adoption of T1-mapping. • Normal myocardial T1 values vary widely across different MOLLI T1-mapping methods. • Clustered structuring via an online calculator is practical for T1 standardization. • Clustered structuring allows benchmarking of local norms against published norms. • Clustered structuring increases confidence and quality in T1-mapping implementation. [ABSTRACT FROM AUTHOR]
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- 2021
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11. Left ventricular morphology, global and longitudinal function in normal older individuals: A cardiac magnetic resonance study
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Nikitin, Nikolay P., Huan Loh, Poay, de Silva, Ramesh, Witte, Klaus K.A., Lukaschuk, Elena I., Parker, Anita, Farnsworth, T. Alan, Alamgir, Farqad M., Clark, Andrew L., and Cleland, John G.F.
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HEART diseases in women , *DIAGNOSTIC imaging , *HEART failure , *AGING - Abstract
Abstract: Background: The heart transforms structurally and functionally with age but the nature and magnitude of reported changes appear inconsistent. This study was designed to assess left ventricular (LV) morphology, global and longitudinal function in healthy older men and women using cardiac magnetic resonance (CMR). Methods: Ninety-five healthy subjects (age 62±16 years, range 22–91 years) underwent breath-hold cine CMR. LV end-diastolic volume (EDV), end-systolic volume (ESV), myocardial mass, ejection fraction (EF), mass-to-volume ratio, mean midventricular wall motion, thickness and thickening were calculated from short-axis data sets. Average mitral annular displacement was measured to assess longitudinal LV function. Results: Subjects were divided according to age (<65 and ≥65 years) and sex. EDV and ESV indices (corrected for body surface area) decreased whilst EF increased with age. There was no difference in LV myocardial mass index between the age groups, but midventricular wall thickness was significantly higher in older people. Mass-to-volume ratio also increased with age. In contrast to EF, mitral annular displacement declined with age. Midventricular LV wall thickness, myocardial mass index and mass-to-volume ratio were higher in men than in women but there were no differences in measures of global and longitudinal LV systolic function. Conclusions: Due to smaller LV volumes but higher wall thickness, myocardial mass remains unchanged with age. We have found an age-related increase in EF and reduction in longitudinal LV function in apparently normal subjects. This must be borne in mind when assessing older patients with possible heart failure and normal LV systolic function. Men have higher myocardial mass than women. [Copyright &y& Elsevier]
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- 2006
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