14 results on '"Lee, Aaron M."'
Search Results
2. The Prognostic Significance of Homologous Recombination Repair Pathway Alterations in Metastatic Hormone Sensitive Prostate Cancer.
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Lee, Aaron M., Saidian, Ava, Shaya, Justin, Nonato, Taylor, Cabal, Angelo, Randall, J. Michael, Millard, Frederick, Stewart, Tyler, Rose, Brent, Tamayo, Pablo, and McKay, Rana R.
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PROSTATE cancer , *METASTASIS , *HOMOLOGOUS recombination , *DNA sequencing , *ENZYME inhibitors - Abstract
Data regarding the clinical outcomes of men with metastatic hormone sensitive prostate cancer (mHSPC) who harbor homologous recombination repair (HRR) gene alterations have not been fully characterized. Here, we examine a cohort of mHSPC patients who underwent genomic sequencing to evaluate the impact of HRR gene alterations on time to castrate resistance and other outcomes. We found that the presence of an HRR gene alteration is associated with a shorter time to mCRPC. Introduction: The homologous recombination repair (HRR) pathway is a frequently mutated pathway in advanced prostate cancer. The clinical course of patients with HRR gene alterations who have metastatic hormone sensitive prostate cancer (mHSPC) has not been fully characterized. Here, we examine the outcomes of men with mHSPC with HRR alterations. Methods: We conducted a single-center retrospective analysis of men with mHSPC who underwent next generation sequencing. The primary objective was to assess the time from diagnosis of mHSPC to metastatic castrate resistance prostate cancer (mCRPC) in patients with pathogenic HRR alterations compared to individuals lacking these alterations. Key secondary objectives included time to mCRPC in prespecified cohorts, PSA response, and overall survival. Results: 151 men with mHSPC were identified for the study. 24% (N = 37) had pathogenic HRR gene alterations detected with the most common alterations found in BRCA2 (n = 15), ATM (n = 10), and CDK12 (n = 7). Time to mCRPC was significantly decreased in patients with HRR gene alterations versus those without such alterations (12.7 vs. 16.1 months, HR 1.95, P = .02). In multivariate analysis, the effect of HRR gene alterations on time to CRPC remained significant when adjusting for age, mHSPC therapy, the volume of disease, the presence of visceral metastases, and PSA (adjusted HR 1.69, P = .02). Stratified by specific HRR gene alteration, patients with BRCA2 or CDK12 had significantly decreased time to mCRPC compared to other HRR alterations. Conclusion: HRR gene alterations are associated with the worse outcomes in mHSPC with significantly shorter time to mCRPC. Given the established role of Poly (ADP-ribose) Polymerase (PARP) inhibitors in mCRPC, these data highlight an opportunity to examine PARP inhibitors earlier in the clinical course for prostate cancer patients. Ongoing prospective studies will further validate the role of PARP inhibitors in mHSPC patients. [ABSTRACT FROM AUTHOR]
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- 2022
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3. Cardiovascular magnetic resonance reference values of mitral and tricuspid annular dimensions: the UK Biobank cohort.
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Ricci, Fabrizio, Aung, Nay, Gallina, Sabina, Zemrak, Filip, Fung, Kenneth, Bisaccia, Giandomenico, Paiva, Jose Miguel, Khanji, Mohammed Y., Mantini, Cesare, Palermi, Stefano, Lee, Aaron M., Piechnik, Stefan K., Neubauer, Stefan, and Petersen, Stefen E.
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Background: Mitral valve (MV) and tricuspid valve (TV) apparatus geometry are essential to define mechanisms and etiologies of regurgitation and to inform surgical or transcatheter interventions. Given the increasing use of cardiovascular magnetic resonance (CMR) for the evaluation of valvular heart disease, we aimed to establish CMR-derived age- and sex-specific reference values for mitral annular (MA) and tricuspid annular (TA) dimensions and tethering indices derived from truly healthy Caucasian adults.Methods: 5065 consecutive UK Biobank participants underwent CMR using cine balanced steady-state free precession imaging at 1.5 T. Participants with non-Caucasian ethnicity, prevalent cardiovascular disease and other conditions known to affect cardiac chamber size and function were excluded. Absolute and indexed reference ranges for MA and TA diameters and tethering indices were stratified by gender and age (45–54, 55–64, 65–74 years).Results: Overall, 721 (14.2%) truly healthy participants aged 45–74 years (54% women) formed the reference cohort. Absolute MA and TA diameters, MV tenting length and MV tenting area, were significantly larger in men. Mean ± standard deviation (SD) end-diastolic and end-systolic MA diameters in the 3-chamber view (anteroposterior diameter) were 2.9 ± 0.4 cm (1.5 ± 0.2 cm/m
2 ) and 3.3 ± 0.4 cm (1.7 ± 0.2 cm/m2 ) in men, and 2.6 ± 0.4 cm (1.6 ± 0.2 cm/m2 ) and 3.0 ± 0.4 cm (1.8 ± 0.2 cm/m2 ) in women, respectively. Mean ± SD end-diastolic and end-systolic TA diameters in the 4-chamber view were 3.2 ± 0.5 cm (1.6 ± 0.3 cm/m2 ) and 3.2 ± 0.5 cm (1.7 ± 0.3 cm/m2 ) in men, and 2.9 ± 0.4 cm (1.7 ± 0.2 cm/m2 ) and 2.8 ± 0.4 cm (1.7 ± 0.3 cm/m2 ) in women, respectively. With advancing age, end-diastolic TA diameter became larger and posterior MV leaflet angle smaller in both sexes. Reproducibility of measurements was good to excellent with an inter-rater intraclass correlation coefficient (ICC) between 0.92 and 0.98 and an intra-rater ICC between 0.90 and 0.97.Conclusions: We described age- and sex-specific reference ranges of MA and TA dimensions and tethering indices in the largest validated healthy Caucasian population. Reference ranges presented in this study may help to improve the distinction between normal and pathological states, prompting the identification of subjects that may benefit from advanced cardiac imaging for annular sizing and planning of valvular interventions. [ABSTRACT FROM AUTHOR]- Published
- 2020
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4. Computation of Coulomb and exchange radial intracule densities
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Lee, Aaron M. and Gill, Peter M.W.
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- 1999
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5. Association Between Recreational Cannabis Use and Cardiac Structure and Function.
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Khanji, Mohammed Y., Jensen, Magnus T., Kenawy, Asmaa A., Raisi-Estabragh, Zahra, Paiva, Jose M., Aung, Nay, Fung, Kenneth, Lukaschuk, Elena, Zemrak, Filip, Lee, Aaron M., Barutcu, Ahmet, Maclean, Edd, Cooper, Jackie, Piechnik, Stefan K., Neubauer, Stefan, and Petersen, Steffen E.
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- 2020
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6. Reference ranges for cardiac structure and function using cardiovascular magnetic resonance (CMR) in Caucasians from the UK Biobank population cohort.
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Petersen, Steffen E., Nay Aung, Sanghvi, Mihir M., Zemrak, Filip, Fung, Kenneth, Miguel Paiva, Jose, Francis, Jane M., Khanji, Mohammed Y., Lukaschuk, Elena, Lee, Aaron M., Carapella, Valentina, Young Jin Kim, Leeson, Paul, Piechnik, Stefan K., and Neubauer, Stefan
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HEART atrium ,HEART ventricles ,AGE distribution ,STATISTICAL correlation ,LEFT heart ventricle ,HEART physiology ,RIGHT heart ventricle ,MAGNETIC resonance imaging ,REFERENCE values ,RESEARCH funding ,SEX distribution ,T-test (Statistics) ,WHITE people ,DATA analysis software ,STROKE volume (Cardiac output) ,INTRACLASS correlation ,PHYSIOLOGY ,ANATOMY - Abstract
Background: Cardiovascular magnetic resonance (CMR) is the gold standard method for the assessment of cardiac structure and function. Reference ranges permit differentiation between normal and pathological states. To date, this study is the largest to provide CMR specific reference ranges for left ventricular, right ventricular, left atrial and right atrial structure and function derived from truly healthy Caucasian adults aged 45-74. Methods: Five thousand sixty-five UK Biobank participants underwent CMR using steady-state free precession imaging at 1.5 Tesla. Manual analysis was performed for all four cardiac chambers. Participants with non-Caucasian ethnicity, known cardiovascular disease and other conditions known to affect cardiac chamber size and function were excluded. Remaining participants formed the healthy reference cohort; reference ranges were calculated and were stratified by gender and age (45-54, 55-64, 65-74). Results: After applying exclusion criteria, 804 (16.²%) participants were available for analysis. Left ventricular (LV) volumes were larger in males compared to females for absolute and indexed values. With advancing age, LV volumes were mostly smaller in both sexes. LV ejection fraction was significantly greater in females compared to males (mean ± standard deviation [SD] of 61 ± 5% vs 58 ± 5%) and remained static with age for both genders. In older age groups, LV mass was lower in men, but remained virtually unchanged in women. LV mass was significantly higher in males compared to females (mean ± SD of 53 ± 9 g/m² vs 4² ± 7 g/m²). Right ventricular (RV) volumes were significantly larger in males compared to females for absolute and indexed values and were smaller with advancing age. RV ejection fraction was higher with increasing age in females only. Left atrial (LA) maximal volume and stroke volume were significantly larger in males compared to females for absolute values but not for indexed values. LA ejection fraction was similar for both sexes. Right atrial (RA) maximal volume was significantly larger in males for both absolute and indexed values, while RA ejection fraction was significantly higher in females. Conclusions: We describe age- and sex-specific reference ranges for the left ventricle, right ventricle and atria in the largest validated normal Caucasian population. [ABSTRACT FROM AUTHOR]
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- 2017
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7. Myocardial Strain Measured by Cardiac Magnetic Resonance Predicts Cardiovascular Morbidity and Death.
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Chadalavada, Sucharitha, Fung, Kenneth, Rauseo, Elisa, Lee, Aaron M., Khanji, Mohammed Y., Amir-Khalili, Alborz, Paiva, Jose, Naderi, Hafiz, Banik, Shantanu, Chirvasa, Mihaela, Jensen, Magnus T., Aung, Nay, and Petersen, Steffen E.
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CARDIAC magnetic resonance imaging , *HEART failure , *MYOCARDIAL infarction , *PROGNOSIS , *STROKE ,CARDIOVASCULAR disease related mortality - Abstract
Myocardial strain using cardiac magnetic resonance (CMR) is a sensitive marker for predicting adverse outcomes in many cardiac disease states, but the prognostic value in the general population has not been studied conclusively. The goal of this study was to assess the independent prognostic value of CMR feature tracking (FT)—derived LV global longitudinal (GLS), circumferential (GCS), and radial strain (GRS) metrics in predicting adverse outcomes (heart failure, myocardial infarction, stroke, and death). Participants from the UK Biobank population imaging study were included. Univariable and multivariable Cox models were used for each outcome and each strain marker (GLS, GCS, GRS) separately. The multivariable models were tested with adjustment for prognostically important clinical features and conventional global LV imaging markers relevant for each outcome. Overall, 45,700 participants were included in the study (average age 65 ± 8 years), with a median follow-up period of 3 years. All univariable and multivariable models demonstrated that lower absolute GLS, GCS, and GRS were associated with increased incidence of heart failure, myocardial infarction, stroke, and death. All strain markers were independent predictors (incrementally above some respective conventional LV imaging markers) for the morbidity outcomes, but only GLS predicted death independently: (HR: 1.18; 95% CI: 1.07-1.30). In the general population, LV strain metrics derived using CMR-FT in radial, circumferential, and longitudinal directions are strongly and independently predictive of heart failure, myocardial infarction, and stroke, but only GLS is independently predictive of death in an adult population cohort. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Right ventricular shape and function: cardiovascular magnetic resonance reference morphology and biventricular risk factor morphometrics in UK Biobank.
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Mauger, Charlène, Gilbert, Kathleen, Lee, Aaron M., Sanghvi, Mihir M., Aung, Nay, Fung, Kenneth, Carapella, Valentina, Piechnik, Stefan K., Neubauer, Stefan, Petersen, Steffen E., Suinesiaputra, Avan, and Young, Alistair A.
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DIABETES complications ,MYOCARDIAL infarction complications ,OBESITY complications ,ALGORITHMS ,ANGINA pectoris ,AUTOMATION ,CARDIOVASCULAR diseases risk factors ,DIASTOLE (Cardiac cycle) ,CARDIAC contraction ,LEFT heart ventricle ,HEART physiology ,RIGHT heart ventricle ,HEART septum ,HYPERCHOLESTEREMIA ,HYPERTENSION ,LONGITUDINAL method ,MAGNETIC resonance imaging ,REGRESSION analysis ,RISK assessment ,SMOKING ,TISSUE banks ,THREE-dimensional imaging ,DISEASE complications - Abstract
Background: The associations between cardiovascular disease (CVD) risk factors and the biventricular geometry of the right ventricle (RV) and left ventricle (LV) have been difficult to assess, due to subtle and complex shape changes. We sought to quantify reference RV morphology as well as biventricular variations associated with common cardiovascular risk factors. Methods: A biventricular shape atlas was automatically constructed using contours and landmarks from 4329 UK Biobank cardiovascular magnetic resonance (CMR) studies. A subdivision surface geometric mesh was customized to the contours using a diffeomorphic registration algorithm, with automatic correction of slice shifts due to differences in breath-hold position. A reference sub-cohort was identified consisting of 630 participants with no CVD risk factors. Morphometric scores were computed using linear regression to quantify shape variations associated with four risk factors (high cholesterol, high blood pressure, obesity and smoking) and three disease factors (diabetes, previous myocardial infarction and angina). Results: The atlas construction led to an accurate representation of 3D shapes at end-diastole and end-systole, with acceptable fitting errors between surfaces and contours (average error less than 1.5 mm). Atlas shape features had stronger associations than traditional mass and volume measures for all factors (p < 0.005 for each). High blood pressure was associated with outward displacement of the LV free walls, but inward displacement of the RV free wall and thickening of the septum. Smoking was associated with a rounder RV with inward displacement of the RV free wall and increased relative wall thickness. Conclusion: Morphometric relationships between biventricular shape and cardiovascular risk factors in a large cohort show complex interactions between RV and LV morphology. These can be quantified by z-scores, which can be used to study the morphological correlates of disease. [ABSTRACT FROM AUTHOR]
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- 2019
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9. Automated quality control in image segmentation: application to the UK Biobank cardiovascular magnetic resonance imaging study.
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Robinson, Robert, Valindria, Vanya V., Bai, Wenjia, Oktay, Ozan, Kainz, Bernhard, Suzuki, Hideaki, Sanghvi, Mihir M., Aung, Nay, Paiva, José Miguel, Zemrak, Filip, Fung, Kenneth, Lukaschuk, Elena, Lee, Aaron M., Carapella, Valentina, Kim, Young Jin, Piechnik, Stefan K., Neubauer, Stefan, Petersen, Steffen E., Page, Chris, and Matthews, Paul M.
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AUTOMATION ,CARDIOVASCULAR disease diagnosis ,DIGITAL image processing ,MAGNETIC resonance imaging ,QUALITY control ,RESEARCH evaluation - Abstract
Background: The trend towards large-scale studies including population imaging poses new challenges in terms of quality control (QC). This is a particular issue when automatic processing tools such as image segmentation methods are employed to derive quantitative measures or biomarkers for further analyses. Manual inspection and visual QC of each segmentation result is not feasible at large scale. However, it is important to be able to automatically detect when a segmentation method fails in order to avoid inclusion of wrong measurements into subsequent analyses which could otherwise lead to incorrect conclusions. Methods: To overcome this challenge, we explore an approach for predicting segmentation quality based on Reverse Classification Accuracy, which enables us to discriminate between successful and failed segmentations on a per-cases basis. We validate this approach on a new, large-scale manually-annotated set of 4800 cardiovascular magnetic resonance (CMR) scans. We then apply our method to a large cohort of 7250 CMR on which we have performed manual QC. Results: We report results used for predicting segmentation quality metrics including Dice Similarity Coefficient (DSC) and surface-distance measures. As initial validation, we present data for 400 scans demonstrating 99% accuracy for classifying low and high quality segmentations using the predicted DSC scores. As further validation we show high correlation between real and predicted scores and 95% classification accuracy on 4800 scans for which manual segmentations were available. We mimic real-world application of the method on 7250 CMR where we show good agreement between predicted quality metrics and manual visual QC scores. Conclusions: We show that Reverse classification accuracy has the potential for accurate and fully automatic segmentation QC on a per-case basis in the context of large-scale population imaging as in the UK Biobank Imaging Study. [ABSTRACT FROM AUTHOR]
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- 2019
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10. Automated cardiovascular magnetic resonance image analysis with fully convolutional networks.
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Bai, Wenjia, Sinclair, Matthew, Tarroni, Giacomo, Oktay, Ozan, Rajchl, Martin, Vaillant, Ghislain, Lee, Aaron M., Aung, Nay, Lukaschuk, Elena, Sanghvi, Mihir M., Zemrak, Filip, Fung, Kenneth, Paiva, Jose Miguel, Carapella, Valentina, Kim, Young Jin, Suzuki, Hideaki, Kainz, Bernhard, Matthews, Paul M., Petersen, Steffen E., and Piechnik, Stefan K.
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AUTOMATION ,CARDIOVASCULAR disease diagnosis ,DIGITAL image processing ,MAGNETIC resonance imaging ,ARTIFICIAL neural networks ,STROKE volume (Cardiac output) - Abstract
Background: Cardiovascular resonance (CMR) imaging is a standard imaging modality for assessing cardiovascular diseases (CVDs), the leading cause of death globally. CMR enables accurate quantification of the cardiac chamber volume, ejection fraction and myocardial mass, providing information for diagnosis and monitoring of CVDs. However, for years, clinicians have been relying on manual approaches for CMR image analysis, which is time consuming and prone to subjective errors. It is a major clinical challenge to automatically derive quantitative and clinically relevant information from CMR images. Methods: Deep neural networks have shown a great potential in image pattern recognition and segmentation for a variety of tasks. Here we demonstrate an automated analysis method for CMR images, which is based on a fully convolutional network (FCN). The network is trained and evaluated on a large-scale dataset from the UK Biobank, consisting of 4,875 subjects with 93,500 pixelwise annotated images. The performance of the method has been evaluated using a number of technical metrics, including the Dice metric, mean contour distance and Hausdorff distance, as well as clinically relevant measures, including left ventricle (LV) end-diastolic volume (LVEDV) and end-systolic volume (LVESV), LV mass (LVM); right ventricle (RV) end-diastolic volume (RVEDV) and end-systolic volume (RVESV). Results: By combining FCN with a large-scale annotated dataset, the proposed automated method achieves a high performance in segmenting the LV and RV on short-axis CMR images and the left atrium (LA) and right atrium (RA) on long-axis CMR images. On a short-axis image test set of 600 subjects, it achieves an average Dice metric of 0.94 for the LV cavity, 0.88 for the LV myocardium and 0.90 for the RV cavity. The mean absolute difference between automated measurement and manual measurement is 6.1 mL for LVEDV, 5.3 mL for LVESV, 6.9 gram for LVM, 8.5 mL for RVEDV and 7.2 mL for RVESV. On long-axis image test sets, the average Dice metric is 0.93 for the LA cavity (2-chamber view), 0.95 for the LA cavity (4-chamber view) and 0.96 for the RA cavity (4-chamber view). The performance is comparable to human inter-observer variability. Conclusions: We show that an automated method achieves a performance on par with human experts in analysing CMR images and deriving clinically relevant measures. [ABSTRACT FROM AUTHOR]
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- 2018
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11. The calculation of magnetisabilities using current density functional theory
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Lee, Aaron M., Colwell, Susan M., and Handy, Nicholas C.
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- 1994
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12. Investigations of the CASE approximation using the optimal partition of the Coulomb operator
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Lee, Aaron M
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- 1998
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13. Coulomb energies via Stewart densities
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Lee, Aaron M. and Gill, Peter M.W.
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- 1998
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14. The adiabatic approximation
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Handy, Nicholas C. and Lee, Aaron M.
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- 1996
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