1. Molecular phylogeny of the Pycnonotus sinensis and Pycnonotus taivanus in Taiwan based on sequence variations of nuclear CHD and mitochondrial cytochrome b genes
- Author
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Chang, Hsueh-Wei, Chou, Yii-Cheng, Su, Ying-Fang, Cheng, Chun-An, Yao, Cheng-Te, Tsai, Chi-Li, Lee, Hsien-Chung, Wen, Cheng-Hao, and Cheng, Chien-Chung
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MOLECULAR phylogeny , *BULBULS , *CARRIER proteins , *DNA helicases , *MITOCHONDRIAL DNA , *NUCLEOTIDE sequence , *CYTOCHROME b , *GENETIC polymorphisms , *ANIMAL genetics - Abstract
Abstract: Sequences of the partial 293-bp nuclear Z-chromosome-linked chromo-helicase binding protein (CHD-Z) and 729-bp mitochondrial cytochrome b (cyt b) genes were obtained from two species of the same family Pycnonotidae of Pycnonotus sinensis (P. sinensis, Chinese Bulbul) and Pycnonotus taivanus (P. taivanus, Taiwan Bulbul) distributed in Taiwan. A panel of 10 individuals (n =5 for each) with unknown relationship was used to characterize single nucleotide polymorphisms (SNPs) of these genes. We identified 2 and 10 SNPs in CHD-Z and cyt b loci, respectively. Frequency of SNPs was 10 per every 1465- and 729-bp on average. Pairwise nucleotide divergences of CHD-Z and cyt b genes among 10 specimens ranged from 0 to 0.0034 and 0 to 0.0055, respectively. Phylogenetic analysis suggested that the P. taivanus group assignment based on the CHD-Z and cyt b sequences is obviously very similar to P. sinensis. [Copyright &y& Elsevier]
- Published
- 2010
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