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This study examined the genetic diversity of small-spored Alternaria species in the southwest desert of the USA by sampling 552 isolates from different habitats (soil and plant debris) in different locations (urban and an undisturbed desert). To estimate the genetic diversity, Amplified Fragment Length Polymorphism (AFLP) fingerprinting analysis was performed for all isolates. Strains representative of the sampled genotypic diversity (n = 125) were further characterized according their sporulation pattern and the capability to produce allergens. Morphological characterization assigned the majority of the strains to the Alternaria alternata and Alternaria tenuissima morpho-groups with only two isolates assigned to the Alternaria arborescens morpho-group. AFLP fingerprinting differentiated the A. arborescens morpho-groups, but could not distinguish between the A. alternata and A. tenuissima morpho-groups. Western blot analysis showed that a large number of allergenic proteins were produced by strains. These proteins were not specific for any morpho-group nor source of isolation. A hierarchical analysis of molecular variance was performed on the AFLP data to quantify molecular variation and partition this variation among sampled locations and habitat. No statistically significant differentiation among locations and habitat was detected indicating a lack of population structure across environments. [ABSTRACT FROM AUTHOR]

Abstract: Brown apical necrosis of English walnut and grey necrosis of hazelnut are destructive fruit diseases caused by a complex of opportunistic fungi including several small-spored catenulate Alternaria taxa. Thirty Alternaria isolates recovered from walnut and hazelnut fruit that were pathogenic on their respective host were compared along with type or representative isolates of A. alternata, A. tenuissima, A. arborescens, and A. infectoria using morphological and molecular criteria. Morphological examination using standardized procedures separated the walnut and hazelnut isolates into three morphological groups: the A. alternata group, the A. tenuissima group, and the A. arborescens group based upon common characteristics of the conidium and the sporulation apparatus. To evaluate genetic relationships among these groups, AFLP markers, inter simple sequence repeat (ISSR) markers, and histone gene sequence data were compared. Based upon AFLP data, the A. alternata and A. tenuissima groups comprised a single lineage, and the A. arborescens group comprised a separate lineage. ISSR data supported the grouping by AFLP data except for three isolates of the A. alternata group that clustered with the A. arborescens group. Base substitution of the H4 gene supported the discrimination of the A. arborescens group from the A. alternata and A. tenuissima groups. Tests of hypotheses based upon groupings derived from the various data sets supported the discrimination of the A. arborescens group but did not support the discrimination of the A. alternata group from the A. tenuissima group. [Copyright &y& Elsevier]

Lacinutrix jangbogonensis PAMC 27137 T is a psychrophilic bacterial strain isolated from the marine sediment of the Ross Sea, Antarctica. Here we present an annotated draft genome sequence of the strain PAMC 27137 T which showed the narrower range in the growth temperature than other type strains of the genus Lacinutrix . The draft genome of 4,017,559 bp with a G + C content of 30.6% comprised 14 scaffolds of 46 contigs containing 3589 protein-coding genes and 46 RNA genes. The function of 2185 (60.1%) proteins was predicted and 1943 (53.4%) proteins were assigned to COG functional categories. Comparative analysis of the draft genome across other type strains may provide clues into the mechanism of growth in narrow temperature range. [ABSTRACT FROM AUTHOR]

Abstract The majority of biogeographic studies in Antarctic terrestrial ecosystems have focused on macroscopic eukaryote taxa. In contrast, microbial taxa have been almost neglected or examined without sufficient spatial coverage. Here, we examined the spatial distribution of soil bacterial communities and their relation to local environmental gradients in ice-free regions of the maritime Antarctic. Soils in this region were dominated by Actinobacteria and Proteobacteria , which are typically found in Antarctic soils. Notably, candidate divisions AD3 and WPS-2, which rarely occur in other biomes, were found in high abundance in acidic surface soils. Soil pH and total organic carbon (TOC) were the primary drivers of the bacterial community structure and various geochemical variables also played important roles in structuring bacterial community composition. Bacterial communities were significantly correlated to measured environmental variables, most of which are spatially structured at the local spatial scale (0.5–8 km). This suggests that spatial heterogeneity of environmental factors is an important driver of shifts in bacterial communities. Although various sets of environmental variables were related to bacterial communities, a large proportion of community variation remained unexplained. This indicates that bacterial communities in Antarctic soils may be governed by other biotic or abiotic factors which are not typically measured in other biome studies. Highlights • Spatial heterogeneity of environmental factors is the major driver of shifts in bacterial communities. • Soil pH and TOC were the primary drivers of bacterial community structure. • A high percentage of the bacterial diversity is unexplained by the measured environmental variables. • Candidate divisions AD3 and WPS-2 were found in high abundance in acidic surface soils. [ABSTRACT FROM AUTHOR]