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Four calix[4]arene benzo-crown-6 ethers functionalized with primary amine groups in various positions have been synthesized. The cesium extraction behavior under alkaline and acidic conditions has been measured for these compounds and compared with that of non-amine containing analogs. Extraction strength when the amine group is neutral is not affected by the amino substituent, but protonation causes a marked decrease in extraction strength, permitting pH-switched back-extraction. [Copyright &y& Elsevier]

The effect of mutations of the catalytic dyad residues of SARS-CoV-2 main protease (MProWT) on the thermodynamics of binding of covalent inhibitors comprising nitrile [nirmatrelvir (NMV), NBH2], aldehyde (GC373), and ketone (BBH1) warheads to MPro is examined together with room temperature X-ray crystallography. When lacking the nucleophilic C145, NMV binding is -400-fold weaker corresponding to 3.5 kcal/mol and 13.3 °C decrease in free energy (ΔG) and thermal stability (Tm), respectively, relative to MProWT. The H41A mutation results in a 20-fold increase in the dissociation constant (Kd), and 1.7 kcal/mol and 1.4 °C decreases in ΔG and Tm, respectively. Increasing the pH from 7.2 to 8.2 enhances NMV binding to MProH41A, whereas no significant change is observed in binding to MProWT. Structures of the four inhibitor complexes with MPro1-304/C145A show that the active site geometries of the complexes are nearly identical to that of MProWT with the nucleophilic sulfur of C145 positioned to react with the nitrile or the carbonyl carbon. These results support a two-step mechanism for the formation of the covalent complex involving an initial non-covalent binding followed by a nucleophilic attack by the thiolate anion of C145 on the warhead carbon. Noncovalent inhibitor ensitrelvir (ESV) exhibits a binding affinity to MProWT that is similar to NMV but differs in its thermodynamic signature from NMV. The binding of ESV to MProC145A also results in a significant, but smaller, increase in Kd and decrease in ΔG and Tm, relative to NMV. [ABSTRACT FROM AUTHOR]

Thermodynamic interaction and non-isothermal crystallization behavior in a series of protiated (H-) and deuterated (D-) poly(ε-caprolactone) (PCL) blends have been systematically investigated. The blends were thermodynamically miscible in the melt. The Flory−Huggins interaction parameter (χ) between H- and D-PCL segments was estimated. The hydroxyl groups in the PCL chain-ends were found to contribute significantly to the negative χ values. Combined characterization of small-angle X-ray scattering (SAXS) and small-angle neutron scattering (SANS) revealed that upon slow cooling, unique alternating H-rich and D-rich PCL lamellar structures are formed regardless of the blend ratio, which is attributed to the T c difference between H- and D-PCLs. While upon rapid cooling, mixed crystals of H- and D-PCLs are predominantly formed. These results provide insightful information on the melt thermodynamics as well as detailed chain arrangements in lamellar crystals for semi-crystalline H/D polyester blends. Image 1 • Thermodynamic interactions and crystallization behavior of protiated (H) and deuterated (D) PCL blends were investigated. • The hydroxyl groups in the PCL chain-ends were found to contribute significantly to the negative χ values. • Unique alternating H-rich and D-rich PCL lamellar structures are formed regardless of the blend ratio. [ABSTRACT FROM AUTHOR]

• Deuterated chitosan was produced from the filamentous fungus Rhizopus oryzae. • All non-exchangeable hydrogens were substituted with deuterium except C2 by NMR. • SANS shows that deuteration does not change chitosan structure. • This is a new approach to produce deuterated chitosan for studies of biocomposites. Deuterated chitosan was produced from the filamentous fungus Rhizopus oryzae , cultivated with deuterated glucose in H 2 O medium, without the need for conventional chemical deacetylation. After extraction and purification, the chemical composition and structure were determined by Fourier-transform infrared spectroscopy (FTIR), nuclear magnetic resonance (NMR), and small-angle neutron scattering (SANS). 13C NMR experiments provided additional information about the position of the deuterons in the glucoseamine backbone. The NMR spectra indicated that the deuterium incorporation at the non-exchangeable hydrogen positions of the aminoglucopyranosyl ring in the C3 – C5 positions was at least 60–80 %. However, the C2 position was deuterated at a much lower level (6%). Also, SANS showed that the structure of deuterated chitosan was very similar compared to the non-deuterated counterpart. The most abundant radii of the protiated and deuterated chitosan fibers were 54 Å and 60 Å, respectively, but there is a broader distribution of fiber radii in the protiated chitosan sample. The highly deuterated, soluble fungal chitosan described here can be used as a model material for studying chitosan-enzyme complexes for future neutron scattering studies. Because the physical behavior of non-deuterated fungal chitosan mimicked that of shrimp shell chitosan, the methods presented here represent a new approach to producing a high quality deuterated non-animal-derived aminopolysaccharide for studying the structure-function association of biocomposite materials in drug delivery, tissue engineering and other bioactive chitosan-based composites. [ABSTRACT FROM AUTHOR]

Abstract: An efficient synthesis of 2,2,3,3,11,11,12,12-octamethyl-1,4,7,10,13-pentaoxacyclohexadecane (1, OM16C5) is described, which affords over an order of magnitude improvement in yield over the previously reported method. The first X-ray crystal structure of 1, as a complex with NaSCN, is also reported. [Copyright &y& Elsevier]

The chain arrangement within the crystalline lamellae has been the focus of polymer crystallization. In this study, a series of protiated (H) and deuterated (D) poly(ε-caprolactone) (PCL) blends, block and random copolymers were investigated by small-angle neutron scattering (SANS) measurements. The spatial inhomogeneities of block copolymers were analyzed via Debye-Bueche method and temperature dependence of Flory-Huggins interaction parameter χ in the melt was extracted from fitting the scattering data to the random phase approximation model. Studying the changes of SANS signals further revealed that the copolymers exhibit cooling rate-dependent crystallization behaviors. A unique SANS double-peak pattern was found in D4/D10 50/50 blend and D10-D0-D10 triblock copolymers (where D0, D4, and D10 indicate PCL with different levels of deuteration), as a result of two types of contrasts: scattering length density (SLD) difference between lamellae of different components and density difference between amorphous and lamellar domains. These detailed findings complement our understanding of the complex crystallization processes of deuterated polyesters, which also suggest an avenue for fine control of crystal structures that adds to materials design. Image 1 • Deuterated (D) PCL block and random copolymers were investigated by SANS measurements. • The spatial inhomogeneities of D-PCL triblock copolymers were calculated and χ parameters were extracted. • Bimodal SANS peaks were found in blends and triblock copolymers, which was resulted from two types of contrasts. [ABSTRACT FROM AUTHOR]