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Candida tropicalis is distinguished from Saccharomyces cerevisiae by its great xylose utilization ability, maximizing its capability to ferment both hexoses and xylose to produce high-value products, and its ability to overcome the problem of end-product inhibition derived from lignocellulosic hydrolysis. However, little or no information about the molecular evolution mechanism of C. tropicalis to inhibitory compounds (acetic acid, phenol, and furfural) derived from lignocellulosic hydrolysis is known. In this study, the adaptation of a C. tropicalis strain SHC-03 to corn stover hydrolysate after mutagenesis through stepwise evolution resulted in multi-generation evolved strains after 60 rounds of evolution using the C. tropicalis strain SHC-03 as the parental strain. The evolved strain, generation B-60, (GB-60) showed the highest tolerance (15.81 g/L) and resistance as well as the lowest subcellular damage to inhibitory compounds derived from corn stover hydrolysis. Comparative transcriptome and genomic analyses between the evolved strain GB-60 and the control strain SHC-03 revealed enhanced functional and mutated genes including CTRG_03726, CTRG_01923, CTRG_04945, CTRG_05115, CTRG_03102, CTRG_05127, CTRG_00952 and CTRG_03034 involved in increased cell wall biosynthesis and remodeling, pentose phosphate pathway, metabolic and carbon pathways, detoxification of inhibitory compounds, and the multidrug/multixenobiotic resistance (MDR/MXR) transporters. These genes also played active roles in oxidative stress response, mitochondrial stress response, ER stress response, vacuole stress response and autophagy, DNA repair, and chromatin protection resulting in less ROS accumulation, as well as lower damage to some subcellular organelles in the evolved strain. The information from this study will provide guidelines for the development of engineering strains with high tolerance towards inhibitors derived from corn stover hydrolysis. [Display omitted] • Acquisition of improved evolved strain of C. tropicalis SHC-03, GB-60. • Increased resistance of evolved strain to inhibitors derived from corn stover hydrolysis. • Discovery of genes and pathways involved in increased resistance to and degradation of inhibitors. [ABSTRACT FROM AUTHOR]

The pupae is one of the most valuable components of the silkworm, a by-product of silk reeling. Employing them as a raw material to create valued products will help to recycle and reuse silkworm pupae, as well as contribute to the food industry's long-term development. Silkworm pupae protein (SPP) and pupae oil (SPO) are high in nutritional and bioactive components that have a variety of applications in the food industry as well as health-promoting characteristics. In this review, we first elaborate on the modification, nutritional, and functional properties of silkworm pupae in terms of requirements for protein and lipids processing as well as current extraction technology. In the subsequent sections, we summarize the modification techniques including the science and technology involved in attaining fatty acid components of SPO. Finally, we focus on recent studies related to the utilization of SPP and SPO subject to their inclusion in foods for their health benefits. The key to silkworm pupae product design may be to fully exploit and utilize the inherent characteristics of the pupae to produce functional peptides and structural lipids with high nutritional content, which may necessitate further improvements in the bioactive and functional properties. Designing more ecologically friendly, low-cost, and efficient processes for producing protein and oil from silkworm pupae is also a trend in technology. This may further provide new insights into the mechanisms behind modifying silkworm pupae as food and its health advantages. [Display omitted] • Modifications and functions of silkworm pupae protein (SPP) and oil (SPO) were reviewed. • Modification of SPP and SPO reveal valuable nutritional properties. • Inclusion of SPP and SPO in food and feed applications were summarized. • Peptide composition in silkworm pupae aid in valuable biological activities. • Further research to compare SPP and SPO with standard proteins and oils is recommended. [ABSTRACT FROM AUTHOR]