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• Rhizoma coptidis has a good inhibitory effect on Vibrio alginolyticus. • Transcriptomic analysis reveals the molecular mechanism of virulence genes. • Rhizoma coptidis could potnetially be a substitute for antibiotics. Rhizoma coptidis , a Chinese herbal medicine widely used to treat various bacterial infections, has the potential to develop antibiotic substitutes to overcome the drug resistance of Vibrio alginolyticus. To study the inhibitory effect of R. coptidis on V. alginolyticus , we sequenced the transcriptomes of three groups of samples of wild-type V. alginolyticus (CK) and V. alginolyticus , which were stressed by 5 mg/mL R. coptidis for 2 h (RC_2 h) and 4 h (RC_4 h). CK was compared with RC_2 h and RC_4 h, respectively, and a total of 1565 differentially expressed genes (DEGs) (988 up-regulated and 577 down-regulated) and 1737 DEGs (1152 up-regulated and 585 down-regulated) were identified. Comparing RC_2 h with RC_4 h, 156 DEGs (114 up-regulated and 42 down-regulated) were identified. The ability of biofilm formation and motility of V. alginolyticus altered upon with different concentrations of R. coptidis. Interestingly, relative expression patterns of virulence genes appeared statistically significantly varied, upon different concentrations of R. coptidis extract. DEGs were annotated to the Gene Ontology (GO) database for function enrichment analysis and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, the results showed that the main enriched pathways, was those related to the virulence of V. alginolyticus. This study provides a new perspective for understanding the complex pathogenic mechanism of V. alginolyticus. R. coptidis could potnetially be used as alternative or complimnetary to antibiotics to treat infections after further research. [ABSTRACT FROM AUTHOR]

• 1200 μg/mL F. schisandrae inhibited the growth of V.alginolyticus ND-01. • V. alginolyticus under high concentrations of F. schisandrae stress had insufficient ability in the whole biofilm formation process. • DEGs was involved in the following functional categories: metabolic process, single-organism process, catalytic activity and localization. Due to the abusive use of antibiotics, bacterial resistance has become a global problem and poses severe threats to aquaculture. The drug-resistant diseases caused by Vibrio alginolyticus have caused significant economic losses to cultured marine fish. Fructus schisandrae is used to treat inflammatory diseases in China and Japan. There have been no reports of bacterial molecular mechanisms associated with F. schisandrae stress. In this study, the inhibiting effect of F. schisandrae on the growth of V. alginolyticus was detected to understand response mechanisms at the molecular level. The antibacterial tests were analyzed via next-generation deep sequencing technology (RNA sequencing, RNA-seq). Wild V. alginolyticus (CK) was compared with V. alginolyticus, F. schisandrae incubated for 2 h, and V. alginolyticus, F. schisandrae incubated for 4 h. Our results revealed that there were 582 genes (236 upregulated and 346 downregulated) and 1068 genes (376 upregulated and 692 downregulated), respectively. Differentially expressed genes (DEGs) were involved in the following functional categories: metabolic process, single-organism process, catalytic activity, cellular process, binding, membrane, cell part, cell, and localization. FS_2 h was compared with FS_4 h, and 21 genes (14 upregulated and 7 downregulated) were obtained. The RNA-seq results were validated by detecting the expression levels of 13 genes using quantitative real-time polymerase chain reaction (qRT-PCR). The qRT-PCR results matched those of the sequencing, which reinforced the reliability of the RNA-seq. The results revealed the transcriptional response of V. alginolyticus to F. schisandrae , which will provide new ideas for studying V. alginolyticus' complex virulence molecular mechanism and the possibility of developing Schisandra to prevent and treat drug-resistant diseases. [ABSTRACT FROM AUTHOR]

• A significant decrease in gene expression of adhesion-deficient V. harveyi. • fliA , fliR , and flrB were responsible for flagellation and silenced via RNAi. • fliA , fliR , and flrB have important roles in the adhesion of V. harveyi. • fliA , fliR , flrB regulate bacterial adhesion by affecting its motility, biofilm formation. • fliA , fliR , flrB regulate adhesion ability of V. harveyi in different environments. Bacteria adhesion to fish mucus is a crucial virulence mechanism. As the initial step of bacterial infection, adhesion is impacted by bacterial motility and environmental conditions. However, its molecular mechanism is yet unclear. In this study, a significant decrease in gene expression of adhesion-deficient Vibrio harveyi was observed when the bacteria were subjected by Cu2+(50 mg/L), Pb2+(100 mg/L), Hg2+(25 mg/L), and Zn2+(50 mg/L). The genes fliA , fliR , and flrB were responsible for flagellation; being crucial for adhesion, these genes were identified and silenced via RNAi. After silencing of these genes by RNAi technology, the ability of adhesion, biofilm formation, motility, and flagella synthesis of V. harveyi were considerably reduced. Compared with the control group, it was observed that the expression levels of fliS , fliD , flgH , and flrC were significant down-regulated in fliR -RNAi, flrB -RNAi, and fliA -RNAi. This data indicates that the expression levels of most virulence genes are affected by fliA , fliR , and flrB. Also, the expression of fliA , fliR , and flrB can be influenced by the salinity, temperature, and pH. The results show that: (1) fliA , fliR , and flrB have important roles in the adhesion of V. harveyi ; (2) fliA , fliR , and flrB can regulate bacterial adhesion by affecting its motility, and biofilm formation; (3) fliA , fliR , and flrB can regulate adhesion ability of V. harveyi in different environments. [ABSTRACT FROM AUTHOR]