64 results on '"Time-Lapse Imaging methods"'
Search Results
2. Time-Lapse Imaging and Artificial Intelligence: It is Just the End of the Beginning!
- Author
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Kovacs P, Sandfeld E, Pereira N, Flyckt R, and Lindheim SR
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- Humans, Female, Pregnancy, Artificial Intelligence, Time-Lapse Imaging methods
- Published
- 2024
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3. Visualizing metabolic regulation using metabolic biosensors during sea urchin embryogenesis.
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Furze A, Waldron A, and Yajima M
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- Animals, Embryo, Nonmammalian metabolism, Time-Lapse Imaging methods, Biosensing Techniques methods, Oxidative Phosphorylation, Embryonic Development, Pyruvic Acid metabolism, Pyruvate Kinase metabolism, Sea Urchins embryology, Sea Urchins metabolism
- Abstract
Growing evidence suggests that metabolic regulation directly influences cellular function and development and thus may be more dynamic than previously expected. In vivo and in real-time analysis of metabolite activities during development is crucial to test this idea directly. In this study, we employ two metabolic biosensors to track the dynamics of pyruvate and oxidative phosphorylation (Oxphos) during the early embryogenesis of the sea urchin. A pyruvate sensor, PyronicSF, shows the signal enrichment on the mitotic apparatus, which is consistent with the localization patterns of the corresponding enzyme, pyruvate kinase (PKM). The addition of pyruvate increases the PyronicSF signal, while PKM knockdown decreases its signal, responding to the pyruvate level in the cell. Similarly, a ratio-metric sensor, Grx-roGFP, that reads the redox potential of the cell responds to DTT and H
2 O2 , the known reducer and inducer of Oxphos. These observations suggest that these metabolic biosensors faithfully reflect the metabolic status in the cell during embryogenesis. The time-lapse imaging of these biosensors suggests that pyruvate and Oxphos levels change both spatially and temporarily during embryonic development. Pyruvate level is increased first in micromeres compared to other blastomeres at the 16-cell stage and remains high in ectoderm while decreasing in endomesoderm during gastrulation. In contrast, the Oxphos signal first decreases in micromeres at the 16-cell stage, while it increases in the endomesoderm during gastrulation, showing the opposite trend of the pyruvate signal. These results suggest that metabolic regulation is indeed both temporally and spatially dynamic during embryogenesis, and these biosensors are a valuable tool to monitor metabolic activities in real-time in developing embryos., (Copyright © 2024 Elsevier Inc. All rights reserved.)- Published
- 2024
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4. Clinical effectiveness and safety of time-lapse imaging systems for embryo incubation and selection in in-vitro fertilisation treatment (TILT): a multicentre, three-parallel-group, double-blind, randomised controlled trial.
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Bhide P, Chan DYL, Lanz D, Alqawasmeh O, Barry E, Baxter D, Gonzalez Carreras F, Choudhury Y, Cheong Y, Chung JPW, Collins B, Cong L, Doidge S, Heighway J, Patel D, Pardo MC, Rattos A, Wright A, Dodds J, Perez T, Khan KS, and Thangaratinam S
- Subjects
- Humans, Female, Double-Blind Method, Adult, Pregnancy, Pregnancy Rate, Embryo Transfer methods, Treatment Outcome, Time-Lapse Imaging methods, Fertilization in Vitro methods, Embryo Culture Techniques methods, Sperm Injections, Intracytoplasmic methods
- Abstract
Background: Time-lapse imaging systems for embryo incubation and selection might improve outcomes of in-vitro fertilisation (IVF) and intracytoplasmic sperm injection (ICSI) treatment due to undisturbed embryo culture conditions, improved embryo selection, or both. However, the benefit remains uncertain. We aimed to evaluate the effectiveness of time-lapse imaging systems providing undisturbed culture and embryo selection, and time-lapse imaging systems providing only undisturbed culture, and compared each with standard care without time-lapse imaging., Methods: We conducted a multicentre, three-parallel-group, double-blind, randomised controlled trial in participants undergoing IVF or ICSI at seven IVF centres in the UK and Hong Kong. Embryologists randomly assigned participants using a web-based system, stratified by clinic in a 1:1:1 ratio to the time-lapse imaging system for undisturbed culture and embryo selection (time-lapse imaging group), time-lapse imaging system for undisturbed culture alone (undisturbed culture group), and standard care without time-lapse imaging (control group). Women were required to be aged 18-42 years and men (ie, their partners) 18 years or older. Couples had to be receiving their first, second, or third IVF or ICSI treatment and could not participate if using donor gametes. Participants and trial staff were masked to group assignment, embryologists were not. The primary outcome was live birth. We performed analyses using the intention-to-treat principle and reported the main analysis in participants with primary outcome data available (full analysis set). The trial is registered on the International Trials Registry (ISRCTN17792989) and is now closed., Findings: 1575 participants were randomly assigned to treatment groups (525 participants per group) between June 21, 2018, and Sept 30, 2022. The live birth rates were 33·7% (175/520) in the time-lapse imaging group, 36·6% (189/516) in the undisturbed culture group, and 33·0% (172/522) in the standard care group. The adjusted odds ratio was 1·04 (97·5% CI 0·73 to 1·47) for time-lapse imaging arm versus control and 1·20 (0·85 to 1·70) for undisturbed culture versus control. The risk reduction for the absolute difference was 0·7 percentage points (97·5% CI -5·85 to 7·25) between the time-lapse imaging and standard care groups and 3·6 percentage points (-3·02 to 10·22) between the undisturbed culture and standard care groups. 79 serious adverse events unrelated to the trial were reported (n=28 in time-lapse imaging, n=27 in undisturbed culture, and n=24 in standard care)., Interpretation: In women undergoing IVF or ICSI treatment, the use of time-lapse imaging systems for embryo culture and selection does not significantly increase the odds of live birth compared with standard care without time-lapse imaging., Funding: Barts Charity, Pharmasure Pharmaceuticals, Hong Kong OG Trust Fund, Hong Kong Health and Medical Research Fund, Hong Kong Matching Fund., Competing Interests: Declaration of interests PB declares support for the current trial and manuscript from Barts Charity (MGU0374) and Pharmasure Pharmaceuticals through Queen Mary University of London. DYLC declares support for the current trial and manuscript from Hong Kong OG trust fund (reference number 6904985), Hong Kong Health and Medical Research Fund (07180566), and Hong Kong Matching Fund (RMG01-8601386) through the Chinese University of Hong Kong. YiC declares grants from the National Institute for Health and Care Research and Medical Research Council through the University of Southampton, honoraria for lectures through Ferring Pharmaceuticals and Merck, and being a minor shareholder for Complete Fertility. All other authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY 4.0 license. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
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5. No improvement in livebirth rates by time-lapse technology.
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Bergh C and Lundin K
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- Female, Humans, Pregnancy, Live Birth epidemiology, Time-Lapse Imaging methods
- Abstract
Competing Interests: We declare no competing interests.
- Published
- 2024
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6. Considerations for future modification of The Association for the Study of Reproductive Biology embryo grading system incorporating time-lapse observations.
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Garcia-Belda A, Cairó O, Martínez-Moro Á, Cuadros M, Pons MC, de Mendoza MVH, Delgado A, Rives N, Carrasco B, Cabello Y, Figueroa MJ, Cascales-Romero L, González-Soto B, and Cuevas-Saiz I
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- Humans, Time-Lapse Imaging methods, Embryo Transfer methods, Biology, Embryo Culture Techniques, Embryo Implantation, Fertilization in Vitro methods, Blastocyst, Embryonic Development, Embryo, Mammalian
- Abstract
The Association for the Study of Reproductive Biology (ASEBIR) Interest Group in Embryology (in Spanish 'Grupo de Interés de Embriología') reviewed key morphokinetic parameters to assess the contribution of time-lapse technology (TLT) to the ASEBIR grading system. Embryo grading based on morphological characteristics is the most widely used method in human assisted reproduction laboratories. The introduction and implementation of TLT has provided a large amount of information that can be used as a complementary tool for morphological embryo evaluation and selection. As part of IVF treatments, embryologists grade embryos to decide which embryos to transfer or freeze. At the present, the embryo grading system developed by ASEBIR does not consider dynamic events observed through TLT. Laboratories that are using TLT consider those parameters as complementary data for embryo selection. The aim of this review was to evaluate review time-specific morphological changes during embryo development that are not included in the ASEBIR scoring system, and to consider them as candidates to add to the scoring system., (Copyright © 2023 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2024
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7. Deep learning for embryo evaluation using time-lapse: a systematic review of diagnostic test accuracy.
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Berman A, Anteby R, Efros O, Klang E, and Soffer S
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- Pregnancy, Female, Humans, Pregnancy Rate, Retrospective Studies, Time-Lapse Imaging methods, Systematic Reviews as Topic, Diagnostic Tests, Routine, Artificial Intelligence, Deep Learning
- Abstract
Objective: This study aimed to investigate the accuracy of convolutional neural network models in the assessment of embryos using time-lapse monitoring., Data Sources: A systematic search was conducted in PubMed and Web of Science databases from January 2016 to December 2022. The search strategy was carried out by using key words and MeSH (Medical Subject Headings) terms., Study Eligibility Criteria: Studies were included if they reported the accuracy of convolutional neural network models for embryo evaluation using time-lapse monitoring. The review was registered with PROSPERO (International Prospective Register of Systematic Reviews; identification number CRD42021275916)., Methods: Two reviewer authors independently screened results using the Covidence systematic review software. The full-text articles were reviewed when studies met the inclusion criteria or in any uncertainty. Nonconsensus was resolved by a third reviewer. Risk of bias and applicability were evaluated using the QUADAS-2 tool and the modified Joanna Briggs Institute or JBI checklist., Results: Following a systematic search of the literature, 22 studies were identified as eligible for inclusion. All studies were retrospective. A total of 522,516 images of 222,998 embryos were analyzed. Three main outcomes were evaluated: successful in vitro fertilization, blastocyst stage classification, and blastocyst quality. Most studies reported >80% accuracy, and embryologists were outperformed in some. Ten studies had a high risk of bias, mostly because of patient bias., Conclusion: The application of artificial intelligence in time-lapse monitoring has the potential to provide more efficient, accurate, and objective embryo evaluation. Models that examined blastocyst stage classification showed the best predictions. Models that predicted live birth had a low risk of bias, used the largest databases, and had external validation, which heightens their relevance to clinical application. Our systematic review is limited by the high heterogeneity among the included studies. Researchers should share databases and standardize reporting., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2023
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8. No difference in morphokinetics between male and female preimplantation embryos from ART.
- Author
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Fraire-Zamora JJ, Martinez M, Torra-Massana M, Miguel-Escalada I, and Vassena R
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- Pregnancy, Male, Female, Humans, Retrospective Studies, Sperm Injections, Intracytoplasmic, Live Birth, Time-Lapse Imaging methods, Fertilization in Vitro methods, Embryo Culture Techniques, Semen, Blastocyst
- Abstract
Research Question: Do morphokinetic parameters vary between male and female preimplantation embryos?, Design: This was a retrospective cohort study of 175 cycles between March 2018 and June 2021 at two reproductive centres. It included time-lapse data from 92 female and 83 male preimplantation embryos exclusively issued from fresh oocyte donation and undergoing intracytoplasmic sperm injection (ICSI). Only fresh elective single-embryo transfers on day 5 were assessed, and the sex of the embryo was confirmed at birth. The morphokinetic parameters analysed were measured in hours post-insemination (hpi). A two-tailed Student's t-test was used to compare the morphokinetics between embryo sexes and a value of P < 0.05 was considered statistically significant., Results: Following strict inclusion criteria to avoid poor-quality preimplantation embryos, no significant differences were found in morphokinetic parameters when comparing cycles that resulted in female versus male live births for the following: time to pronuclear fading (22.1 ± 2.4 versus 22.4 ± 2.9 hpi; P = 0.52); time to the 2-cell stage (24.6 ± 2.5 versus 25.0 ± 2.5 hpi; P = 0.34); time to the 3-cell stage (35.3 ± 3.3 versus 35.8 ± 3.1 hpi; P = 0.28); time to the 4-cell stage (36.3 ± 3.4 versus 36.9 ± 3.7 hpi; P = 0.20); time to the 5-cell stage (47.9 ± 4.6 versus 48.0 ± 4.8 hpi; P = 0.88); time to the 8-cell stage (54.0 ± 6.5 versus 54.1 ± 6.5 hpi; P = 0.91); time to the start of blastulation (86.3 ± 14.6 versus 85.7 ± 15.5 hpi; P = 0.78); and time to the full blastocyst stage (93.0 ± 16.9 versus 93.2 ± 17.2 hpi; P = 0.94)., Conclusions: There are no significant differences in morphokinetics between male and female preimplantation embryos., (Copyright © 2023 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2023
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9. Clinical outcomes of uninterrupted embryo culture with or without time-lapse-based embryo selection versus interrupted standard culture (SelecTIMO): a three-armed, multicentre, double-blind, randomised controlled trial.
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Kieslinger DC, Vergouw CG, Ramos L, Arends B, Curfs MHJM, Slappendel E, Kostelijk EH, Pieters MHEC, Consten D, Verhoeven MO, Besselink DE, Broekmans F, Cohlen BJ, Smeenk JMJ, Mastenbroek S, de Koning CH, van Kasteren YM, Moll E, van Disseldorp J, Brinkhuis EA, Kuijper EAM, van Baal WM, van Weering HGI, van der Linden PJQ, Gerards MH, Bossuyt PM, van Wely M, and Lambalk CB
- Subjects
- Pregnancy, Male, Female, Humans, Time-Lapse Imaging methods, Pregnancy Rate, Reproductive Techniques, Assisted, Semen, Fertilization in Vitro
- Abstract
Background: Time-lapse monitoring is increasingly used in fertility laboratories to culture and select embryos for transfer. This method is offered to couples with the promise of improving pregnancy chances, even though there is currently insufficient evidence for superior clinical results. We aimed to evaluate whether a potential improvement by time-lapse monitoring is caused by the time-lapse-based embryo selection method itself or the uninterrupted culture environment that is part of the system., Methods: In this three-armed, multicentre, double-blind, randomised controlled trial, couples undergoing in-vitro fertilisation or intracytoplasmic sperm injection were recruited from 15 fertility clinics in the Netherlands and randomly assigned using a web-based, computerised randomisation service to one of three groups. Couples and physicians were masked to treatment group, but embryologists and laboratory technicians could not be. The time-lapse early embryo viability assessment (EEVA; TLE) group received embryo selection based on the EEVA time-lapse selection method and uninterrupted culture. The time-lapse routine (TLR) group received routine embryo selection and uninterrupted culture. The control group received routine embryo selection and interrupted culture. The co-primary endpoints were the cumulative ongoing pregnancy rate within 12 months in all women and the ongoing pregnancy rate after fresh single embryo transfer in a good prognosis population. Analysis was by intention to treat. This trial is registered on the ICTRP Search Portal, NTR5423, and is closed to new participants., Findings: 1731 couples were randomly assigned between June 15, 2017, and March 31, 2020 (577 to the TLE group, 579 to the TLR group, and 575 to the control group). The 12-month cumulative ongoing pregnancy rate did not differ significantly between the three groups: 50·8% (293 of 577) in the TLE group, 50·9% (295 of 579) in the TLR group, and 49·4% (284 of 575) in the control group (p=0·85). The ongoing pregnancy rates after fresh single embryo transfer in a good prognosis population were 38·2% (125 of 327) in the TLE group, 36·8% (119 of 323) in the TLR group, and 37·8% (123 of 325) in the control group (p=0·90). Ten serious adverse events were reported (five TLE, four TLR, and one in the control group), which were not related to study procedures., Interpretation: Neither time-lapse-based embryo selection using the EEVA test nor uninterrupted culture conditions in a time-lapse incubator improved clinical outcomes compared with routine methods. Widespread application of time-lapse monitoring for fertility treatments with the promise of improved results should be questioned., Funding: Health Care Efficiency Research programme from Netherlands Organisation for Health Research and Development and Merck., Competing Interests: Declaration of interests DCK received the Fertility Society of Australia exchange award. MHJMC reports an unrestricted grant for implementing Value Based Healthcare paid to their institution and a personal speakers fee from Merck (Netherlands). FB reports a research support grant from Merck (Netherlands), Health Care Efficiency Research program grant from the Netherlands Organisation for Health Research and Development, speaker fees and scientific dinner symposium from Besins Healthcare Monaco, and is a member of the advisory board for Merck (Netherlands) and Ferring (Netherlands). CHdK reports a donation from Merck (Netherlands) for the European Society of Human Reproduction and Embryology annual meeting 2022 in Milan. MvW is coordinating editor of the Cochrane Gynecology and Fertility Group. CBL is Editor-In-Chief for Human Reproduction. All other authors declare no competing interests., (Copyright © 2023 Elsevier Ltd. All rights reserved.)
- Published
- 2023
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10. Cutting-edge techniques provide insights regarding repeated implantation failure patients.
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Govahi A, Nasr-Esfahani MH, Amjadi F, Mahdevar M, Mehdizadeh R, and Mehdizadeh M
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- Time-Lapse Imaging methods, Blastocyst, Embryo Implantation, Embryo, Mammalian
- Abstract
Research Question: Can time-lapse parameters and the transcriptional profile of cumulus cells be used to achieve a more stringent and non-invasive method of embryo assessment and to identify possible factors affecting the embryo's ability to implant in repeated implantation failure (RIF) patients?, Design: A total of 190 embryos from 18 oocyte donors and 145 embryos from 15 RIF patients were evaluated based on time-lapse parameters. Three morphokinetic parameters including T5 (time to reach five cells), T3 (time to reach three cells) and CC2 (time to two to three cells) were recorded for all embryos. Embryos that had all three parameters in the normal range were graded as high quality and comparison between these parameters were compared in high-quality embryos between two groups. The transcriptional profile of cumulus cells related to high-quality embryos of both groups were analysed by RNA sequencing and compared. Finally, the possible relationship between differentially expressed genes and time-lapse parameters was examined., Results: T5 was significantly lower in the RIF group than the donor group (P = 0.011). The cumulus cell transcriptome analysis showed 193 genes were down-regulated and 222 genes up-regulated. The mammalian target of rapamycin and the transforming growth factor beta pathways were significantly increased in the RIF group compared to the donor group (P = 0.007 and 0.01, respectively). Vitamin B12 and fatty acid beta-oxidation pathways were also significantly reduced in the RIF group compared to the donor group (P = 0.006 and 0.01, respectively)., Conclusions: Differences in the transcriptomic profiles of cumulus cells and some morphokinetic parameters may be one of the main factors contributing to unexplained RIF., (Copyright © 2022 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2023
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11. Investigation of the reliability of semi-automatic annotation by the Geri time-lapse system.
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Vandame J, Fossard C, Filali M, Benammar A, Ranga S, Pirtea P, Racowsky C, Ayoubi JM, and Poulain M
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- Embryo Culture Techniques methods, Embryonic Development, Female, Humans, Kinetics, Reproducibility of Results, Time-Lapse Imaging methods, Blastocyst, Cell Nucleus
- Abstract
Research Question: What is the reliability of Geri® Assess 2.0 software time-lapse technology for annotating kinetic events and identifying abnormal phenotypes in preimplantation human embryos?, Design: Embryos were annotated using Assess 2.0 for the appearance and fading of pronuclei, and for progression to the 2-, 3-, 4-, 5- and 6-cell stages and to three blastocyst stages. Identification of reverse cleavage and direct cleavage phenotypes was also recorded. Manual annotation was undertaken after these events in a blinded fashion. Embryo scores were compared between Assess 2.0 and manual annotation., Results: A total of 513 oocytes from 34 women were included. Detection rates for Assess 2.0 versus manual annotation among the 10 kinetic events and including direct cleavage and reverse cleavage ranged between 0% and 94.4%. The percentage of discordant pairs was significantly different for all 12 events analysed (P-value range 0.036 to <0.0001). The sensitivity of Assess 2.0 ranged from 68.2% to 94.4% and specificity ranged from 63.8% to 97.3%. Assess 2.0 called for verification by the embryologist for at least one event in 55.2% of oocytes assessed. Of the 297 embryos scored by manual annotation, Assess 2.0 assigned the same score for only 125 (42.1%), although after manual corrections, concordance with manual annotation scores was raised to 66.0%., Conclusions: The results reveal striking differences between Assess 2.0 and manual annotation for kinetic annotations. Failure of Assess 2.0 to detect direct cleavage events and the low detection rate of reverse cleavage are further limitations. These collective findings highlight the importance of validating time-lapse annotation software before clinical implementation. Manual verification of Assess 2.0 outputs remains essential for accurate data interpretation., (Copyright © 2022 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2022
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12. Acute cytotoxicity of mineral fibres observed by time-lapse video microscopy.
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Di Giuseppe D, Scarfì S, Alessandrini A, Bassi AM, Mirata S, Almonti V, Ragazzini G, Mescola A, Filaferro M, Avallone R, Vitale G, Scognamiglio V, and Gualtieri AF
- Subjects
- Asbestos, Crocidolite toxicity, Asbestos, Serpentine toxicity, Calcium metabolism, Fluorescent Dyes, Humans, Sodium metabolism, THP-1 Cells, Zeolites toxicity, Apoptosis, Microscopy, Video methods, Mineral Fibers toxicity, Reactive Oxygen Species metabolism, Time-Lapse Imaging methods
- Abstract
Inhalation of mineral fibres is associated with the onset of an inflammatory activity in the lungs and the pleura responsible for the development of fatal malignancies. It is known that cell damage is a necessary step for triggering the inflammatory response. However, the mechanisms by which mineral fibres exert cytotoxic activity are not fully understood. In this work, the kinetics of the early cytotoxicity mechanisms of three mineral fibres (i.e., chrysotile, crocidolite and fibrous erionite) classified as carcinogenic by the International Agency for Research on Cancer, was determined for the first time in a comparative manner using time-lapse video microscopy coupled with in vitro assays. All tests were performed using the THP-1 cell line, differentiated into M0 macrophages (M0-THP-1) and exposed for short times (8 h) to 25 μg/mL aliquots of chrysotile, crocidolite and fibrous erionite. The toxic action of fibrous erionite on M0-THP-1 cells is manifested since the early steps (2 h) of the experiment while the cytotoxicity of crocidolite and chrysotile gradually increases during the time span of the experiment. Chrysotile and crocidolite prompt cell death mainly via apoptosis, while erionite exposure is also probably associated to a necrotic-like effect. The potential mechanisms underlying these different toxicity behaviours are discussed in the light of the different morphological, and chemical-physical properties of the three fibres., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2022
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13. Spatiotemporal distribution of PKCα, Cdc42, and Rac1 before directed cell migration.
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Sasaki S, Takahashi R, Luo Y, Chujo K, Sera T, and Kudo S
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- Animals, Bryostatins pharmacology, Calcium metabolism, Cells, Cultured, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Intracellular Space drug effects, Keratinocytes cytology, Microscopy, Fluorescence methods, Protein Kinase C-alpha genetics, Rats, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Stress, Mechanical, Time-Lapse Imaging methods, cdc42 GTP-Binding Protein genetics, rac1 GTP-Binding Protein genetics, Cell Movement, Intracellular Space metabolism, Keratinocytes metabolism, Protein Kinase C-alpha metabolism, cdc42 GTP-Binding Protein metabolism, rac1 GTP-Binding Protein metabolism
- Abstract
Cdc42 is a key factor in directed cell migration and accumulates at the leading edge of migrating cells. However, what kind of proteins control Cdc42 and when is unclear. After mechanical wounding, protein kinase C α (PKCα), a conventional PKC isozyme, begins to accumulate at the edges of cells adjacent to the wounded cells (WCs). In this study, we hypothesized that PKCα may be implicated in directed cell migration at an early stage before Cdc42 controls the migration. We focused on the spatiotemporal distribution of PKCα, Cdc42, and Rac1 before cell migration. After wounding, at the edges of cells adjacent to the WCs, PKCα accumulation, Cdc42 accumulation, Rac1 accumulation, and filopodia formation occurred in that order. The PKCα inhibitor suppressed Cdc42 accumulation at the cell edges. These results suggest that inhibition of PKCα activity inhibits cell migration. In addition, it is not Cdc42 but PKCα that may decide the direction of cell migration., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
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14. Evaluation of polymyxin B in combination with 13 other antibiotics against carbapenemase-producing Klebsiella pneumoniae in time-lapse microscopy and time-kill experiments.
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Wistrand-Yuen P, Olsson A, Skarp KP, Friberg LE, Nielsen EI, Lagerbäck P, and Tängdén T
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- Bacteriological Techniques, Drug Therapy, Combination, Humans, Klebsiella pneumoniae enzymology, Time Factors, Bacterial Proteins metabolism, Klebsiella pneumoniae drug effects, Microscopy methods, Polymyxin B administration & dosage, Polymyxin B therapeutic use, Time-Lapse Imaging methods, beta-Lactamases metabolism
- Abstract
Objectives: This study aimed to explore the interactions of polymyxin B in combination with 13 other antibiotics against carbapenemase-producing Klebsiella pneumoniae., Methods: Five clinical isolates of multidrug-resistant K. pneumoniae producing KPC-2, KPC-3, NDM-1, OXA-48 and VIM-1 carbapenemases were used. Polymyxin B was tested alone and in combination with amikacin, aztreonam, cefepime, chloramphenicol, ciprofloxacin, fosfomycin, linezolid, meropenem, minocycline, rifampicin, temocillin, thiamphenicol and trimethoprim. Inhibition of growth during antibiotic exposure was evaluated in 24-hr automated time-lapse microscopy experiments. Combinations that showed positive interactions were subsequently evaluated in static time-kill experiments., Results: All strains carried multiple (≥9) resistance genes as determined by whole-genome sequencing. In the initial screening the combination of polymyxin B and minocycline was most active with enhanced activity compared with the single antibiotics detected against all strains. Positive interactions were also observed with polymyxin B in combination with rifampicin and fosfomycin against four of five strains and less frequently with other antibiotics. Time-kill experiments demonstrated an additive or synergistic activity (1-2 log
10 or ≥2 log10 CFU/mL reduction, respectively, compared with the most potent single antibiotic) with 21 of 23 tested combinations. However, because of regrowth, only 13 combinations were synergistic at 24 hr. Combinations with minocycline or rifampicin were most active, each showing synergy and bacteriostatic or bactericidal effects resulting in 1.93-3.97 and 2.55-5.91 log10 CFU/mL reductions, respectively, after 24 hr against four strains., Discussion: Polymyxin B in combination with minocycline, rifampicin or fosfomycin could be of potential clinical interest. Time-lapse microscopy showed some discrepancy in results compared with the time-kill data but was useful for screening purposes., (Copyright © 2020 The Author(s). Published by Elsevier Ltd.. All rights reserved.)- Published
- 2020
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15. Stabilization of microtubules by cevipabulin.
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Nasrin SR, Rashedul Kabir AM, Konagaya A, Ishihara T, Sada K, and Kakugo A
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- Animals, Hydrocarbons, Halogenated chemistry, Hydrocarbons, Halogenated pharmacology, Microscopy, Fluorescence, Molecular Structure, Nanotechnology, Paclitaxel chemistry, Paclitaxel metabolism, Paclitaxel pharmacology, Protein Stability drug effects, Swine, Time-Lapse Imaging methods, Triazoles chemistry, Triazoles pharmacology, Hydrocarbons, Halogenated metabolism, Microtubules metabolism, Molecular Docking Simulation, Triazoles metabolism, Tubulin metabolism
- Abstract
We report the utility of cevipabulin as a stabilizing agent for microtubules. Cevipabulin-stabilized microtubules were more flexible compared to the microtubules stabilized by paclitaxel, the most commonly used microtubule stabilizing agent. Similar to the paclitaxel-stabilized microtubules, cevipabulin-stabilized microtubules were driven by kinesins in an in vitro gliding assay. The velocity of cevipabulin-stabilized microtubules was significantly higher than that of paclitaxel-stabilized microtubules. These findings will enrich the variety of microtubules with difference in mechanical and dynamic properties and widen their applications in nanotechnology., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2019
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16. PCP-dependent transcellular regulation of actomyosin oscillation facilitates convergent extension of vertebrate tissue.
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Shindo A, Inoue Y, Kinoshita M, and Wallingford JB
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- Actomyosin genetics, Algorithms, Animals, Cell Membrane metabolism, Cell Movement genetics, Cell Polarity genetics, Embryo, Nonmammalian embryology, Embryo, Nonmammalian metabolism, Gene Expression Regulation, Developmental, Luminescent Proteins genetics, Luminescent Proteins metabolism, Microscopy, Confocal, Models, Biological, Time-Lapse Imaging methods, Xenopus Proteins genetics, Xenopus Proteins metabolism, Xenopus laevis, Actomyosin physiology, Cell Movement physiology, Cell Polarity physiology, Embryo, Nonmammalian cytology
- Abstract
Oscillatory flows of actomyosin play a key role in the migration of single cells in culture and in collective cell movements in Drosophila embryos. In vertebrate embryos undergoing convergent extension (CE), the Planar Cell Polarity (PCP) pathway drives the elongation of the body axis and shapes the central nervous system, and mutations of the PCP genes predispose humans to various malformations including neural tube defects. However, the spatiotemporal patterns of oscillatory actomyosin contractions during vertebrate CE and how they are controlled by the PCP signaling remain unknown. Here, we address these outstanding issues using a combination of in vivo imaging and mathematical modeling. We find that effective execution of CE requires alternative oscillations of cortical actomyosin across cell membranes of neighboring cells within an optimal frequency range. Intriguingly, temporal and spatial clustering of the core PCP protein Prickle 2 (Pk2) is correlated to submembranous accumulations of F-actin, and depletion of Pk2 perturbs the oscillation of actomyosin contractions. These findings shed light on the significance of temporal regulation of actomyosin contraction by the PCP pathway during CE, in addition to its well-studied spatial aspects., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2019
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17. Live imaging reveals hub cell assembly and compaction dynamics during morphogenesis of the Drosophila testis niche.
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Anllo L, Plasschaert LW, Sui J, and DiNardo S
- Subjects
- Animals, Animals, Genetically Modified, Cell Differentiation, Drosophila melanogaster embryology, Drosophila melanogaster genetics, Drosophila melanogaster metabolism, Embryo Culture Techniques methods, Luminescent Proteins genetics, Luminescent Proteins metabolism, Male, Microscopy, Confocal, Morphogenesis, Testis cytology, Testis embryology, Germ Cells metabolism, Stem Cell Niche, Stem Cells metabolism, Testis metabolism, Time-Lapse Imaging methods
- Abstract
Adult stem cells are often found in specialized niches, where the constituent cells direct self-renewal of their stem cell pool. The niche is therefore crucial for both normal homeostasis and tissue regeneration. In many mammalian tissues, niche cells have classically been difficult to identify, which has hampered any understanding of how tissues first construct niches during development. Fortunately, the Drosophila germline stem cell (GSC) niche is well defined, allowing for unambiguous identification of both niche cells and resident stem cells. The testis niche first forms in the early embryo, during a late stage of gonadogenesis. Here, using live-imaging both in vivo and ex vivo, we follow pro-niche cells as they assemble and assume their final form. We show that after ex vivo culture the niche appears fully functional, as judged by enrichment of adhesion proteins, the ability to activate STAT in adjacent GSCs, and to direct GSCs to divide orthogonally to the niche, just as they would in situ. Collectively, our imaging has generated several novel insights on niche morphogenesis that could not be inferred from fixed images alone. We identify dynamic processes that constitute an assembly phase and a compaction phase during morphogenesis. The compaction phase correlates with cell neighbor exchange among the assembled pro-niche cells, as well as a burst of divisions among newly recruited stem cells. Before compaction, an assembly phase involves the movement of pro-niche cells along the outer periphery of the gonad, using the extracellular matrix (ECM) to assemble at the anterior of the gonad. Finally, live-imaging in integrin mutants allows us to define the role of pro-niche cell-ECM interaction with regard to the new assembly and compaction dynamics revealed here., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2019
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18. Detecting phospholipase activity with the amphipathic lipid packing sensor motif of ArfGAP1.
- Author
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Quartino PY, Fidelio GD, Manneville JB, Goud B, and Ambroggio EE
- Subjects
- Amino Acid Motifs genetics, Animals, GTPase-Activating Proteins genetics, Golgi Apparatus metabolism, Membrane Lipids chemistry, Microscopy, Confocal, Phospholipase D metabolism, Phospholipases A2 metabolism, Phospholipids chemistry, Protein Binding, Time-Lapse Imaging methods, Type C Phospholipases metabolism, Unilamellar Liposomes chemistry, Unilamellar Liposomes metabolism, GTPase-Activating Proteins metabolism, Membrane Lipids metabolism, Phospholipases metabolism, Phospholipids metabolism
- Abstract
The amphipathic lipid packing sensor (ALPS) motif of ArfGAP1 brings this GTPase activating protein to membranes of high curvature. Phospholipases are phospholipid-hydrolyzing enzymes that generate different lipid products that alter the lateral organization of membranes. Here, we evaluate by fluorescence microscopy how in-situ changes of membrane lipid composition driven by the activity of different phospholipases promotes the binding of ALPS. We show that the activity of phospholipase A2, phospholipase C and phospholipase D drastically enhances the binding of ALPS to the weakly-curved membrane of giant liposomes. Our results suggest that the enzymatic activity of phospholipases can modulate the ArfGAP1-mediated intracellular traffic and that amphiphilic peptides such as the ALPS motif can be used to study lipolytic activities at lipid membranes., (Copyright © 2018 Elsevier Inc. All rights reserved.)
- Published
- 2018
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19. Nuclear apoptotic volume decrease in individual cells: Confocal microscopy imaging and kinetic modeling.
- Author
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Khalo IV, Konokhova AI, Orlova DY, Trusov KV, Yurkin MA, Bartova E, Kozubek S, Maltsev VP, and Chernyshev AV
- Subjects
- Cell Nucleus ultrastructure, Chromatin chemistry, Chromatin metabolism, Chromatin ultrastructure, DNA Packaging, Hep G2 Cells, Humans, Imaging, Three-Dimensional, Kinetics, Microscopy, Confocal, Time-Lapse Imaging methods, Apoptosis physiology, Cell Nucleus physiology, Models, Theoretical, Organelle Size physiology, Single-Cell Analysis methods
- Abstract
The dynamics of nuclear morphology changes during apoptosis remains poorly investigated and understood. Using 3D time-lapse confocal microscopy we performed a study of early-stage apoptotic nuclear morphological changes induced by etoposide in single living HepG2 cells. These observations provide a definitive evidence that nuclear apoptotic volume decrease (AVD) is occurring simultaneously with peripheral chromatin condensation (so called "apoptotic ring"). In order to describe quantitatively the dynamics of nuclear morphological changes in the early stage of apoptosis we suggest a general molecular kinetic model, which fits well the obtained experimental data in our study. Results of this work may clarify molecular mechanisms of nuclear morphology changes during apoptosis., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2018
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20. Time-lapse imaging algorithms rank human preimplantation embryos according to the probability of live birth.
- Author
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Fishel S, Campbell A, Montgomery S, Smith R, Nice L, Duffy S, Jenner L, Berrisford K, Kellam L, Smith R, Foad F, and Beccles A
- Subjects
- Algorithms, Embryo Culture Techniques, Embryo Transfer methods, Embryonic Development, Female, Humans, Pregnancy, Pregnancy Rate, Probability, Retrospective Studies, Blastocyst, Fertilization in Vitro methods, Live Birth, Pregnancy Outcome, Time-Lapse Imaging methods
- Abstract
Research Question: Can blastocysts leading to live births be ranked according to morphokinetic-based algorithms?, Design: Retrospective analysis of 781 single blastocyst embryo transfers, including all patient clinical factors that might be potential confounders for the primary outcome measure of live birth, was weighed using separate multi-variable logistic regression models., Results: There was strong evidence of effect of embryo rank on odds of live birth. Embryos were classified A, B, C or D according to calculated variables; time to start (tSB) and duration (dB{tB - tSB}) of blastulation. Embryos of rank D were less likely to result in live birth than embryos of rank A (odds ratio [OR] 0.3046; 95% confidence interval [CI] 0.129, 0.660; P < 0.005). Embryos ranked B were less likely to result in live birth than those ranked A (OR 0.7114; 95% Cl 0.505, 1.001; P < 0.01), and embryos ranked C were less likely to result in live birth than those ranked A (OR 0.6501, 95% Cl 0.373, 1.118; P < 0.01). Overall, the LRT (Likelihood Ratio Test) p-value for embryo rank shows that there is strong evidence that embryo rank is informative as a whole in discriminating between live birth and no live birth outcomes (p = 0.0101). The incidence of live birth was 52.5% from rank A, 39.2% from rank B, 31.4% from rank C and 13.2% from rank D., Conclusions: Time-lapse imaging morphokinetic-based algorithms for blastocysts can provide objective hierarchical ranking of embryos for predicting live birth and may have greater discriminating power than conventional blastocyst morphology assessment., (Copyright © 2018. Published by Elsevier Ltd.)
- Published
- 2018
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21. SRRF: Universal live-cell super-resolution microscopy.
- Author
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Culley S, Tosheva KL, Matos Pereira P, and Henriques R
- Subjects
- Algorithms, Animals, COS Cells, Carbocyanines chemistry, Chlorocebus aethiops, Gene Expression, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Image Processing, Computer-Assisted statistics & numerical data, Microscopy, Fluorescence instrumentation, Molecular Imaging instrumentation, Organic Chemicals chemistry, Phalloidine chemistry, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Time-Lapse Imaging instrumentation, Utrophin genetics, Utrophin metabolism, Fluorescent Dyes chemistry, Microscopy, Fluorescence methods, Molecular Imaging methods, Time-Lapse Imaging methods
- Abstract
Super-resolution microscopy techniques break the diffraction limit of conventional optical microscopy to achieve resolutions approaching tens of nanometres. The major advantage of such techniques is that they provide resolutions close to those obtainable with electron microscopy while maintaining the benefits of light microscopy such as a wide palette of high specificity molecular labels, straightforward sample preparation and live-cell compatibility. Despite this, the application of super-resolution microscopy to dynamic, living samples has thus far been limited and often requires specialised, complex hardware. Here we demonstrate how a novel analytical approach, Super-Resolution Radial Fluctuations (SRRF), is able to make live-cell super-resolution microscopy accessible to a wider range of researchers. We show its applicability to live samples expressing GFP using commercial confocal as well as laser- and LED-based widefield microscopes, with the latter achieving long-term timelapse imaging with minimal photobleaching., (Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2018
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22. Effect of morphokinetics and morphological dynamics of cleavage stage on embryo developmental potential: A time-lapse study.
- Author
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Yang SH, Wu CH, Chen YC, Yang CK, Wu TH, Chen PC, and Tsai HD
- Subjects
- Adult, Cohort Studies, Embryo Culture Techniques methods, Female, Humans, Retrospective Studies, Blastocyst cytology, Embryonic Development, Fertilization in Vitro methods, Time-Lapse Imaging methods
- Abstract
Objective: Using a non-invasive method to select the most competent embryo is essential in in vitro fertilization (IVF). Since the beginning of clinical application of time-lapse technology, several studies have proposed models using the time-lapse imaging system for predicting the IVF outcome. This study used both morphokinetic and morphological dynamic parameters to select embryos with the highest developmental potential., Materials and Methods: A total of 23 intracytoplasmic sperm injection treatment cycles with 138 fertilized oocytes were included in this study. All embryos were cultured to the blastocyst stage, and embryo development was recorded every 10 min by using a time-lapse imaging system. Morphokinetic parameters and eight major abnormal division behaviors were studied to determine their effects on blastocyst formation. The most influential variables were used in hierarchical classification for blastocyst formation prediction., Results: Several parameters were significantly related to the developmental potential. Embryos with the timing of pronuclear fading (tPNF) of >26.4 h post insemination (hpi), the timing of division to two cells (t2) of >29.1 hpi, and the timing of division to four cells (t4) of >41.3 hpi showed the lowest blastocyst formation rate. The abnormal division behaviors of fragmentation >50%, direct cleavage, reverse cleavage, and delayed division or developmental arrest were found to be detrimental to blastocyst formation. On the basis of these results, we propose a hierarchical model classification, in which embryos are classified into groups A-D according to their developmental potential. The blastocyst formation rates of groups A, B, C, and D were 80.0%, 77.8%, 53.7%, and 22.2% (p < 0.001). The good blastocyst rates of groups A, B, C, and D were 60.0%, 44.4%, 14.6%, and 11.1% (p = 0.007)., Conclusion: We propose a hierarchical classification system for blastocyst formation prediction, which provides information for embryo selection by using a time-lapse imaging system., (Copyright © 2018. Published by Elsevier B.V.)
- Published
- 2018
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23. Particle aggregates formed during furfuryl methacrylate plasma polymerization affect human mesenchymal stem cell behaviour.
- Author
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Shirazi HS, Rogers N, Michelmore A, and Whittle JD
- Subjects
- Cell Adhesion, Cell Culture Techniques methods, Cells, Cultured, Humans, Mesenchymal Stem Cells metabolism, Microscopy, Confocal, Microscopy, Electron, Scanning, Particle Size, Photoelectron Spectroscopy, Surface Properties, Time-Lapse Imaging methods, Cell Proliferation, Furans chemistry, Mesenchymal Stem Cells cytology, Methacrylates chemistry, Polymerization
- Abstract
Human Mesenchymal Stem cells (hMSCs) are becoming a major focus in biomedical fields. Application of in vitro expanded hMSCs to treat numerous ailments has led to a commercial emphasis on improving hMSC growth ex vivo. Production of substrate independent, novel thin films is one potential tool for production of commercial viable hMSC expansion. Plasma polymerization allow controlled chemical optimisation of large scale surface areas in a substrate independent manner. Previous study shown that plasma polymerized Furfuryl Methacrylate (ppFMA) surfaces allowed primary fibroblast cells adhesion and proliferation. However, under some deposition conditions, particle aggregates formation was observed. These aggregates had the effect of disrupting cell attachment, despite being chemically indistinguishable from the underlying surface. Herein, hMSCs were cultured on ppFMA surfaces to determine their suitability for stem cell culture and observe the effect of particle aggregates on hMSC attachment and growth. Both metabolic and DNA quantification assays showed that surfaces with particle aggregates had lower numbers of attached cells and slower growth. Uniform surfaces without aggregates showed higher cell attachment and growth levels, which were comparable to Thermanox. Phenotypic analysis showed that there was no change to hMSCs phenotype after 7 & 14days of culture on uniform ppFMA surface. Further investigation using time-lapse image analysis indicated that particle aggregates reduced cell attachment by presenting a physically weak boundary layer, which was damaged by intracellular tension during cell spreading. ppFMA surface can provide a stable substrate independent hMSCs expansion interface that could be applied to larger scale bioreactors, beads or scaffolds., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2018
- Full Text
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24. Methods for the analysis of early oogenesis in Zebrafish.
- Author
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Elkouby YM and Mullins MC
- Subjects
- Animals, Cells, Cultured, Cytoskeleton ultrastructure, DNA analysis, Female, Genes, Reporter, In Situ Hybridization, Fluorescence methods, Luminescent Proteins analysis, Luminescent Proteins genetics, Meiosis, Microscopy, Confocal instrumentation, Microscopy, Confocal methods, Oocytes physiology, Oocytes ultrastructure, Organelles physiology, Organelles ultrastructure, Ovary cytology, Ovary growth & development, Ovum chemistry, Ovum ultrastructure, RNA, Messenger analysis, Sex Determination Processes, Staining and Labeling methods, Zebrafish, Oogenesis, Ovum physiology, Specimen Handling methods, Time-Lapse Imaging methods
- Abstract
Oocyte differentiation is a highly dynamic and intricate developmental process whose mechanistic understanding advances female reproduction, fertility, and ovarian cancer biology. Despite the many attributes of the zebrafish model, it has yet to be fully exploited for the investigation of early oocyte differentiation and ovarian development. This is partly because the properties of the adult zebrafish ovary make it technically challenging to access early stage oocytes. As a result, characterization of these stages has been lacking and tools for their analysis have been insufficient. To overcome these technical hurdles, we took advantage of the juvenile zebrafish ovary, where early stage oocytes can readily be found in high numbers and progress in a predictable manner. We characterized the earliest stages of oocyte differentiation and ovarian development and defined accurate staging criteria. We further developed protocols for quantitative microscopy, live time-lapse imaging, ovarian culture, and isolation of stage-specific oocytes for biochemical analysis. These methods have recently provided us with an unprecedented view of early oogenesis, allowing us to study formation of the Balbiani body, a universal oocyte granule that is associated with oocyte survival in mice and required for oocyte and egg polarity in fish and frogs. Despite its tremendous developmental significance, the Bb has been little investigated and how it forms was unknown in any species for over two centuries. We were able to trace Balbiani body formation and oocyte symmetry breaking to the onset of meiosis. Through this investigation we revealed novel cytoskeletal structures in oocytes and the contribution of specialized cellular organization to differentiation. Overall, the juvenile zebrafish ovary arises as an exciting model for studies of cell and developmental biology. We review these and other recent advances in vertebrate oogenesis in an accompanying manuscript in this issue of Developmental Biology. Here, we describe the protocols for ovarian investigation that we developed in the zebrafish, including all experimental steps that will easily allow others to reproduce such analysis. This juvenile ovary toolbox also contributes to establishing the zebrafish as a model for post-larval developmental stages., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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25. Live births after embryo selection using morphokinetics versus conventional morphology: a retrospective analysis.
- Author
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Fishel S, Campbell A, Montgomery S, Smith R, Nice L, Duffy S, Jenner L, Berrisford K, Kellam L, Smith R, D'Cruz I, and Beccles A
- Subjects
- Adult, Algorithms, Embryo Culture Techniques, Female, Humans, Ovulation Induction, Pregnancy, Retrospective Studies, Embryo Transfer methods, Fertilization in Vitro methods, Live Birth, Time-Lapse Imaging methods
- Abstract
The increasing corpus of clinical studies using time-lapse imaging for embryo selection demonstrates considerable variation in study protocols and only limited-sized study cohorts. Outcome measures are based on implantation or clinical pregnancy; some predict blastulation from early cleavage-stage data, and few have evaluated live birth. Erroneously, most studies treat the embryos as independent variables and do not include patient or treatment variables in the statistical analyses. In this study, cohort size was 14,793 patients and 23,762 cycles. The incidence of live birth (n = 973 deliveries) after embryo selection by objective morphokinetic algorithms was compared with conventional embryology selection parameters (n = 6948 deliveries). A 19% increase in the incidence of live birth was observed when morphokinetic data were used to select embryos for the patient cohort aged younger than 38 years (OR 1.19 with 95% CI 1.06 to 1.34) using their own eggs, and an increase of 37% for oocyte recipients aged over 37 years (OR 1.370; 95% Cl 0.763 to 2.450). This is the largest study of the prospective use of time-lapse imaging algorithms in IVF reporting on live birth outcome, although the nature of purely a closed system versus standard incubation could not be assessed., (Copyright © 2017. Published by Elsevier Ltd.)
- Published
- 2017
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- View/download PDF
26. Unique patterns of organization and migration of FGF-expressing cells during Drosophila morphogenesis.
- Author
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Du L, Zhou A, Patel A, Rao M, Anderson K, and Roy S
- Subjects
- Animals, Animals, Genetically Modified, CRISPR-Cas Systems, Drosophila Proteins metabolism, Drosophila melanogaster embryology, Drosophila melanogaster metabolism, Embryo, Mammalian cytology, Embryo, Mammalian embryology, Embryo, Mammalian metabolism, Fibroblast Growth Factors metabolism, Gene Expression Profiling methods, Hypoxia, In Situ Hybridization, Larva genetics, Larva metabolism, Microscopy, Confocal, Organ Culture Techniques, Protein-Tyrosine Kinases genetics, Protein-Tyrosine Kinases metabolism, Receptors, Fibroblast Growth Factor genetics, Receptors, Fibroblast Growth Factor metabolism, Reverse Transcriptase Polymerase Chain Reaction, Time-Lapse Imaging methods, Trachea cytology, Trachea embryology, Cell Movement genetics, Drosophila Proteins genetics, Drosophila melanogaster genetics, Fibroblast Growth Factors genetics, Gene Expression Regulation, Developmental, Morphogenesis genetics, Trachea metabolism
- Abstract
Fibroblast growth factors (FGF) are essential signaling proteins that regulate diverse cellular functions in developmental and metabolic processes. In Drosophila, the FGF homolog, branchless (bnl) is expressed in a dynamic and spatiotemporally restricted pattern to induce branching morphogenesis of the trachea, which expresses the Bnl-receptor, breathless (btl). Here we have developed a new strategy to determine bnl- expressing cells and study their interactions with the btl-expressing cells in the range of tissue patterning during Drosophila development. To enable targeted gene expression specifically in the bnl expressing cells, a new LexA based bnl enhancer trap line was generated using CRISPR/Cas9 based genome editing. Analyses of the spatiotemporal expression of the reporter in various embryonic stages, larval or adult tissues and in metabolic hypoxia, confirmed its target specificity and versatility. With this tool, new bnl expressing cells, their unique organization and functional interactions with the btl-expressing cells were uncovered in a larval tracheoblast niche in the leg imaginal discs, in larval photoreceptors of the developing retina, and in the embryonic central nervous system. The targeted expression system also facilitated live imaging of simultaneously labeled Bnl sources and tracheal cells, which revealed a unique morphogenetic movement of the embryonic bnl- source. Migration of bnl- expressing cells may create a dynamic spatiotemporal pattern of the signal source necessary for the directional growth of the tracheal branch. The genetic tool and the comprehensive profile of expression, organization, and activity of various types of bnl-expressing cells described in this study provided us with an important foundation for future research investigating the mechanisms underlying Bnl signaling in tissue morphogenesis., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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27. Mouse↔rat aggregation chimaeras can develop to adulthood.
- Author
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Bożyk K, Gilecka K, Humięcka M, Szpila M, Suwińska A, and Tarkowski AK
- Subjects
- Animals, Animals, Newborn, Blastocyst cytology, Blastocyst metabolism, Cell Aggregation genetics, Cell Lineage genetics, Chimera genetics, Chimera growth & development, Embryo Implantation, Embryo, Mammalian cytology, Embryo, Mammalian metabolism, Female, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Luminescent Proteins genetics, Luminescent Proteins metabolism, Male, Mice, Inbred C57BL, Mice, Inbred CBA, Mice, Transgenic, Microscopy, Fluorescence, Pregnancy, Rats, Transgenic, Rats, Wistar, Species Specificity, Time-Lapse Imaging methods, Chimera embryology, Embryo, Mammalian embryology, Embryonic Development
- Abstract
In order to examine interactions between cells originating from different species during embryonic development we constructed interspecific mouse↔rat chimaeras by aggregation of 8-cell embryos. Embryos of both species expressed different fluorescent markers (eGFP and DsRed), which enabled us to follow the fate of both components from the moment of aggregation until adulthood. We revealed that in majority of embryos the blastocyst cavity appeared inside the group of rat cells, while the mouse component was allocated to the deeper layer of the inner cell mass and to the polar trophectoderm. However, due to rearrangement of all cells and selective elimination of rat cells, shortly before implantation all primary lineages became chimaeric. Moreover, despite the fact that rat cells were always present in the mural trophectoderm, majority of mouse↔rat chimaeric blastocysts implanted in mouse uterus, and out of those 46% developed into foetuses and pups, half of which were chimaeric. In contrast to mural trophectoderm, polar trophectoderm derivatives, i.e. the placentae of all chimaeras were exclusively of mouse origin. This strongly suggests that the successful postimplantation development of chimaeras is enabled by gradual elimination of xenogeneic cells from the nascent placenta. The size of chimaeric newborns was within the limits of control mouse neonates. The rat component located preferentially in the anterior part of the body, where it contributed mainly to the neural tube. Our observations indicate that although chimaeric animals were able to reach adulthood, high contribution of rat cells tended to diminish their viability., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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28. Paxillin genes and actomyosin contractility regulate myotome morphogenesis in zebrafish.
- Author
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Jacob AE, Amack JD, and Turner CE
- Subjects
- Animals, Animals, Genetically Modified, Base Sequence, Blotting, Western, Embryo, Mammalian embryology, Embryo, Mammalian metabolism, Gene Knockdown Techniques, Microscopy, Confocal, Muscle Development genetics, Muscle, Skeletal embryology, Mutation, Paxillin genetics, Protein Isoforms genetics, Sequence Homology, Nucleic Acid, Somites embryology, Somites metabolism, Time-Lapse Imaging methods, Zebrafish embryology, Zebrafish genetics, Zebrafish Proteins genetics, Actomyosin metabolism, Morphogenesis, Muscle, Skeletal metabolism, Paxillin metabolism, Zebrafish metabolism, Zebrafish Proteins metabolism
- Abstract
Paxillin (Pxn) is a key adapter protein and signaling regulator at sites of cell-extracellular matrix (ECM) adhesion. Here, we investigated the role of Pxn during vertebrate development using the zebrafish embryo as a model system. We have characterized two Pxn genes, pxna and pxnb, in zebrafish that are maternally supplied and expressed in multiple tissues. Gene editing and antisense gene knockdown approaches were used to uncover Pxn functions during zebrafish development. While mutation of either pxna or pxnb alone did not cause gross embryonic phenotypes, double mutants lacking maternally supplied pxna or pxnb displayed defects in cardiovascular, axial, and skeletal muscle development. Transient knockdown of Pxn proteins resulted in similar defects. Irregular myotome shape and ECM composition were observed, suggesting an "inside-out" signaling role for Paxillin genes in the development of myotendinous junctions. Inhibiting non-muscle Myosin-II during somitogenesis altered the subcellular localization of Pxn protein and phenocopied pxn gene loss-of-function. This indicates that Paxillin genes are effectors of actomyosin contractility-driven morphogenesis of trunk musculature in zebrafish. Together, these results reveal new functions for Pxn during muscle development and provide novel genetic models to elucidate Pxn functions., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
- Full Text
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29. Preliminary investigation of the prevalence and implantation potential of abnormal embryonic phenotypes assessed using time-lapse imaging.
- Author
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Barrie A, Homburg R, McDowell G, Brown J, Kingsland C, and Troup S
- Subjects
- Embryo Culture Techniques, Female, Humans, Pregnancy, Retrospective Studies, Embryo Implantation, Phenotype, Time-Lapse Imaging methods
- Abstract
This retrospective, single site observational study aimed to delineate five abnormal embryonic developmental phenotypes, assessing their prevalence, development potential and suitability for inclusion in embryo selection models for IVF. In total, 15,819 embryos from 4559 treatment cycles cultured in EmbryoScope® incubators between January 2014 and January 2016 were included. Time-lapse images were assessed retrospectively for five abnormal embryo phenotypes: direct cleavage, reverse cleavage, absent cleavage, chaotic cleavage and cell lysis. The prevalence of each abnormal phenotype was assessed. Final embryo disposition, embryo quality and implantation rate were determined and compared with a control embryo cohort. The collective prevalence for the five abnormal phenotypes was 11.4%; chaotic cleavage and direct cleavage together constituted 9.7%. Implantation rates were 17.4%, 0%, 25%, 2.1% and 0% for direct, reverse, absent, chaotic cleavage and cell lysis, respectively. The overall implantation rate for all abnormal embryos with known implantation status was significantly lower compared with the control population (6.9% versus 38.7%, P < 0.0001). The proportion of good quality embryos in each category of abnormal cleavage remained below 25%. Embryos exhibiting an abnormal phenotype may have reduced developmental capability, manifested in both embryo quality and implantation potential, when compared with embryos of normal phenotype., (Copyright © 2017 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
30. Elevated Na + /H + exchanger-1 expression enhances the metastatic collective migration of head and neck squamous cell carcinoma cells.
- Author
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Kaminota T, Yano H, Shiota K, Nomura N, Yaguchi H, Kirino Y, Ohara K, Tetsumura I, Sanada T, Ugumori T, Tanaka J, and Hato N
- Subjects
- Animals, Carcinoma, Squamous Cell genetics, Carcinoma, Squamous Cell pathology, Cation Transport Proteins genetics, Cell Line, Tumor, HEK293 Cells, Head and Neck Neoplasms genetics, Head and Neck Neoplasms pathology, Humans, Immunoblotting, Immunohistochemistry, Lymphatic Metastasis, Male, Mice, Nude, Microscopy, Fluorescence, Neoplasm Invasiveness, RNA Interference, Sodium-Hydrogen Exchanger 1, Sodium-Hydrogen Exchangers genetics, Time-Lapse Imaging methods, Transplantation, Heterologous, Carcinoma, Squamous Cell metabolism, Cation Transport Proteins metabolism, Cell Movement, Head and Neck Neoplasms metabolism, Sodium-Hydrogen Exchangers metabolism
- Abstract
Cancer cells can migrate as collectives during invasion and/or metastasis; however, the precise molecular mechanisms of this form of migration are less clear compared with single cell migration following epithelial-mesenchymal transition. Elevated Na
+ /H+ exchanger1 (NHE1) expression has been suggested to have malignant roles in a number of cancer cell lines and in vivo tumor models. Furthermore, a metastatic human head and neck squamous cell carcinoma (HNSCC) cell line (SASL1m) that was isolated based on its increased metastatic potential also exhibited higher NHE1 expression than its parental line SAS. Time-lapse video recordings indicated that both cell lines migrate as collectives, although with different features, e.g., SASL1m was much more active and changed the direction of migration more frequently than SAS cells, whereas locomotive activities were comparable. SASL1m cells also exhibited higher invasive activity than SAS in Matrigel invasion assays. shRNA-mediated NHE1 knockdown in SASL1m led to reduced locomotive and invasive activities, suggesting a critical role for NHE1 in the collective migration of SASL1m cells. SASL1m cells also exhibited a higher metastatic rate than SAS cells in a mouse lymph node metastasis model, while NHE1 knockdown suppressed in vivo SASL1m metastasis. Finally, elevated NHE1 expression was observed in human HNSCC tissue, and Cariporide, a specific NHE1 inhibitor, reduced the invasive activity of SASL1m cells, implying NHE1 could be a target for anti-invasion/metastasis therapy., (Copyright © 2017 Elsevier Inc. All rights reserved.)- Published
- 2017
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31. Analysis of gap junctional intercellular communications using a dielectrophoresis-based microchip.
- Author
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Tellez-Gabriel M, Charrier C, Brounais-Le Royer B, Mullard M, Brown HK, Verrecchia F, and Heymann D
- Subjects
- Bone Neoplasms pathology, Cell Differentiation physiology, Cell Line, Tumor, Humans, Mesenchymal Stem Cells cytology, Osteoblasts cytology, Osteosarcoma pathology, Time-Lapse Imaging methods, Cell Communication physiology, Electrophoresis, Microchip instrumentation, Electrophoresis, Microchip methods, Gap Junctions physiology
- Abstract
Gap junctions are transmembrane structures that directly connect the cytoplasm of adjacent cells, making intercellular communications possible. It has been shown that the behaviour of several tumours - such as bone tumours - is related to gap junction intercellular communications (GJIC). Several methodologies are available for studying GJIC, based on measuring different parameters that are useful for multiple applications, such as the study of carcinogenesis for example. These methods nevertheless have several limitations. The present manuscript describes the setting up of a dielectrophoresis (DEP)-based lab-on-a-chip platform for the real-time study of Gap Junctional Intercellular Communication between osteosarcoma cells and the main cells accessible to their microenvironment. We conclude that using the DEParray technology for the GJIC assessment has several advantages comparing to current techniques. This methodology is less harmful for cells integrity; cells can be recovered after interaction to make further molecular analysis; it is possible to study GJIC in real time; we can promote cell interactions using up to five different populations. The setting up of this new methodology overcomes several difficulties to perform experiments for solving questions about GJIC process that we are not able to do with current technics., (Copyright © 2017 Elsevier GmbH. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
32. Time-lapse microscopy patent upheld in Europe.
- Author
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Pearce D
- Subjects
- California, Europe, Humans, Universities, Embryo, Mammalian diagnostic imaging, Fertilization in Vitro, Microscopy methods, Patents as Topic legislation & jurisprudence, Time-Lapse Imaging methods
- Abstract
A case for revoking Stanford University's European patent 2430454 on time-lapse microscopy was set out in Reproductive BioMedicine Online by Sterckx et al. in 2014, on the grounds that the patent claimed a method of diagnosis that was excluded under a provision of the European Patent Convention. An opposition at the European Patent Office in which this ground was raised has recently concluded with a decision that the patent is not excluded from patentability under European patent law and is to be upheld. An appeal from this decision has been filed, but the possibility of the decision being overturned is, in this author's opinion, very limited., (Copyright © 2016 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2017
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33. Patenting medical diagnosis methods in Europe: Stanford University and time-lapse microscopy.
- Author
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Sterckx S, Cockbain J, and Pennings G
- Subjects
- California, Europe, Humans, Universities, Embryo, Mammalian diagnostic imaging, Fertilization in Vitro, Microscopy methods, Patents as Topic legislation & jurisprudence, Time-Lapse Imaging methods
- Abstract
In 2013, a European Patent for the technique of time-lapse microscopy was granted by the European Patent Office (EPO) to Stanford University and was subsequently opposed by Unisense FertiliTech A/S and by the European Society for Human Reproduction and Embryology (ESHRE), Sigrid Sterckx, Julian Cockbain and Guido Pennings. ESHRE et al.'s opposition was based on the argument that Stanford's patent was directed to a method of medical diagnosis, methods that are excluded from patentability by Article 53(c) of the European Patent Convention. The Opposition Division of the EPO rejected the oppositions in November 2015, and both opponents have now filed their appeals. In this paper, we comment on the Opposition Division decision and the grounds of appeal put forward by ESHRE et al., (Copyright © 2016 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2017
- Full Text
- View/download PDF
34. Live confocal imaging of Arabidopsis flower buds.
- Author
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Prunet N, Jack TP, and Meyerowitz EM
- Subjects
- Arabidopsis genetics, Arabidopsis ultrastructure, Botany instrumentation, Equipment Design, Flowers ultrastructure, Genes, Reporter, Inflorescence growth & development, Luminescent Proteins analysis, Luminescent Proteins genetics, Meristem growth & development, Microscopy, Confocal instrumentation, Photomicrography methods, Plant Shoots growth & development, Plant Shoots ultrastructure, Plants, Genetically Modified, Time-Lapse Imaging instrumentation, Arabidopsis growth & development, Botany methods, Flowers growth & development, Microscopy, Confocal methods, Time-Lapse Imaging methods
- Abstract
Recent advances in confocal microscopy, coupled with the development of numerous fluorescent reporters, provide us with a powerful tool to study the development of plants. Live confocal imaging has been used extensively to further our understanding of the mechanisms underlying the formation of roots, shoots and leaves. However, it has not been widely applied to flowers, partly because of specific challenges associated with the imaging of flower buds. Here, we describe how to prepare and grow shoot apices of Arabidopsis in vitro, to perform both single-point and time-lapse imaging of live, developing flower buds with either an upright or an inverted confocal microscope., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
35. Multi-sample Arabidopsis Growth and Imaging Chamber (MAGIC) for long term imaging in the ZEISS Lightsheet Z.1.
- Author
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de Luis Balaguer MA, Ramos-Pezzotti M, Rahhal MB, Melvin CE, Johannes E, Horn TJ, and Sozzani R
- Subjects
- Arabidopsis Proteins analysis, Cell Division, Computer-Aided Design, Cyclin B analysis, Equipment Design, Green Fluorescent Proteins analysis, Microscopy, Fluorescence methods, Plant Roots ultrastructure, Printing, Three-Dimensional, Recombinant Fusion Proteins analysis, Time-Lapse Imaging methods, Arabidopsis ultrastructure, Image Processing, Computer-Assisted methods, Microscopy, Fluorescence instrumentation, Time-Lapse Imaging instrumentation
- Abstract
Time-course imaging experiments on live organisms are critical for understanding the dynamics of growth and development. Light-sheet microscopy has advanced the field of long-term imaging of live specimens by significantly reducing photo-toxicity and allowing fast acquisition of three-dimensional data over time. However, current light-sheet technology does not allow the imaging of multiple plant specimens in parallel. To achieve higher throughput, we have developed a Multi-sample Arabidopsis Growth and Imaging Chamber (MAGIC) that provides near-physiological imaging conditions and allows high-throughput time-course imaging experiments in the ZEISS Lightsheet Z.1. Here, we illustrate MAGIC's imaging capabilities by following cell divisions, as an indicator of plant growth and development, over prolonged time periods. To automatically quantify the number of cell divisions in long-term experiments, we present a FIJI-based image processing pipeline. We demonstrate that plants imaged with our chamber undergo cell divisions for >16 times longer than those with the glass capillary system supplied by the ZEISS Z1., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
36. Dissection of local Ca(2+) signals inside cytosol by ER-targeted Ca(2+) indicator.
- Author
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Niwa F, Sakuragi S, Kobayashi A, Takagi S, Oda Y, Bannai H, and Mikoshiba K
- Subjects
- Animals, Animals, Genetically Modified, Astrocytes cytology, Astrocytes metabolism, COS Cells, Caenorhabditis elegans genetics, Caenorhabditis elegans metabolism, Cell Membrane metabolism, Cells, Cultured, Chlorocebus aethiops, Green Fluorescent Proteins genetics, HeLa Cells, Humans, Microscopy, Confocal, Rats, Wistar, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Time-Lapse Imaging methods, Calcium metabolism, Calcium Signaling, Cytosol metabolism, Endoplasmic Reticulum metabolism, Green Fluorescent Proteins metabolism
- Abstract
Calcium (Ca(2+)) is a versatile intracellular second messenger that operates in various signaling pathways leading to multiple biological outputs. The diversity of spatiotemporal patterns of Ca(2+) signals, generated by the coordination of Ca(2+) influx from the extracellular space and Ca(2+) release from the intracellular Ca(2+) store the endoplasmic reticulum (ER), is considered to underlie the diversity of biological outputs caused by a single signaling molecule. However, such Ca(2+) signaling diversity has not been well described because of technical limitations. Here, we describe a new method to report Ca(2+) signals at subcellular resolution. We report that OER-GCaMP6f, a genetically encoded Ca(2+) indicator (GECI) targeted to the outer ER membrane, can monitor Ca(2+) release from the ER at higher spatiotemporal resolution than conventional GCaMP6f. OER-GCaMP6f was used for in vivo Ca(2+) imaging of C. elegans. We also found that the spontaneous Ca(2+) elevation in cultured astrocytes reported by OER-GCaMP6f showed a distinct spatiotemporal pattern from that monitored by plasma membrane-targeted GCaMP6f (Lck-GCaMP6f); less frequent Ca(2+) signal was detected by OER-GCaMP6f, in spite of the fact that Ca(2+) release from the ER plays important roles in astrocytes. These findings suggest that targeting of GECIs to the ER outer membrane enables sensitive detection of Ca(2+) release from the ER at subcellular resolution, avoiding the diffusion of GECI and Ca(2+). Our results indicate that Ca(2+) imaging with OER-GCaMP6f in combination with Lck-GCaMP6f can contribute to describing the diversity of Ca(2+) signals, by enabling dissection of Ca(2+) signals at subcellular resolution., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
37. Off-target effect of the cPLA2α inhibitor pyrrophenone: Inhibition of calcium release from the endoplasmic reticulum.
- Author
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Yun B, Lee H, Ewing H, Gelb MH, and Leslie CC
- Subjects
- Adenosine Triphosphate pharmacology, Animals, Calcimycin pharmacology, Calcium Ionophores pharmacology, Cells, Cultured, Culture Media chemistry, Culture Media pharmacology, Endoplasmic Reticulum metabolism, Enzyme Inhibitors pharmacology, Fibroblasts cytology, Fibroblasts drug effects, Fibroblasts metabolism, Golgi Apparatus drug effects, Golgi Apparatus metabolism, Group IV Phospholipases A2 genetics, Group IV Phospholipases A2 metabolism, Lung cytology, Mice, Knockout, Microscopy, Fluorescence, Mitochondria drug effects, Mitochondria metabolism, Protein Transport drug effects, Serum chemistry, Thapsigargin pharmacology, Time-Lapse Imaging methods, Calcium metabolism, Endoplasmic Reticulum drug effects, Group IV Phospholipases A2 antagonists & inhibitors, Pyrrolidines pharmacology
- Abstract
Cytosolic phospholipase A2α (cPLA2α) mediates agonist-induced release of arachidonic acid from membrane phospholipid for production of eicosanoids. The activation of cPLA2α involves increases in intracellular calcium, which binds to the C2 domain and promotes cPLA2α translocation from the cytosol to membrane to access substrate. The cell permeable pyrrolidine-containing cPLA2α inhibitors including pyrrophenone have been useful to understand cPLA2α function. Although this serine hydrolase inhibitor does not inhibit other PLA2s or downstream enzymes that metabolize arachidonic acid, we reported that it blocks increases in mitochondrial calcium and cell death in lung fibroblasts. In this study we used the calcium indicators G-CEPIA1er and CEPIA2mt to compare the effect of pyrrophenone in regulating calcium levels in the endoplasmic reticulum (ER) and mitochondria in response to A23187 and receptor stimulation. Pyrrophenone blocked calcium release from the ER and concomitant increases in mitochondrial calcium in response to stimulation by ATP, serum and A23187. In contrast, ER calcium release induced by the sarco/endoplasmic reticulum Ca(2+)-ATPase inhibitor thapsigargin was not blocked by pyrrophenone suggesting specificity for the calcium release pathway. As a consequence of blocking calcium mobilization, pyrrophenone inhibited serum-stimulated translocation of the cPLA2α C2 domain to Golgi. The ability of pyrrophenone to block ER calcium release is an off-target effect since it occurs in fibroblasts lacking cPLA2α. The results implicate a serine hydrolase in regulating ER calcium release and highlight the importance of careful dose-response studies with pyrrophenone to study cPLA2α function., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
38. Deletion of the cytoplasmic domain of N-cadherin reduces, but does not eliminate, traction force-transmission.
- Author
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Lee E, Ewald ML, Sedarous M, Kim T, Weyers BW, Truong RH, and Yamada S
- Subjects
- Actin Cytoskeleton metabolism, Animals, Biomechanical Phenomena, Cadherins metabolism, Cell Adhesion drug effects, Cell Adhesion genetics, Cell Adhesion physiology, Dogs, Elastomers metabolism, Epithelial Cells drug effects, Epithelial Cells physiology, Fibronectins metabolism, Hepatocyte Growth Factor pharmacology, Madin Darby Canine Kidney Cells, Mechanotransduction, Cellular drug effects, Mechanotransduction, Cellular physiology, Microscopy, Confocal, Stress, Mechanical, Surface Properties, Time-Lapse Imaging methods, Cadherins genetics, Epithelial Cells metabolism, Mechanotransduction, Cellular genetics, Mutation
- Abstract
Collective migration of epithelial cells is an integral part of embryonic development, wound healing, tissue renewal and carcinoma invasion. While previous studies have focused on cell-extracellular matrix adhesion as a site of migration-driving, traction force-transmission, cadherin mediated cell-cell adhesion is also capable of force-transmission. Using a soft elastomer coated with purified N-cadherin as a substrate and a Hepatocyte Growth Factor-treated, transformed MDCK epithelial cell line as a model system, we quantified traction transmitted by N-cadherin-mediated contacts. On a substrate coated with purified extracellular domain of N-cadherin, cell surface N-cadherin proteins arranged into puncta. N-cadherin mutants (either the cytoplasmic deletion or actin-binding domain chimera), however, failed to assemble into puncta, suggesting the assembly of focal adhesion like puncta requires the cytoplasmic domain of N-cadherin. Furthermore, the cytoplasmic domain deleted N-cadherin expressing cells exerted lower traction stress than the full-length or the actin binding domain chimeric N-cadherin. Our data demonstrate that N-cadherin junctions exert significant traction stress that requires the cytoplasmic domain of N-cadherin, but the loss of the cytoplasmic domain does not completely eliminate traction force transmission., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
39. The development of a single molecule fluorescence standard and its application in estimating the stoichiometry of the nuclear pore complex.
- Author
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Tie HC, Madugula V, and Lu L
- Subjects
- Blotting, Western, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, HEK293 Cells, HeLa Cells, Humans, Microscopy, Confocal, Minor Histocompatibility Antigens chemistry, Minor Histocompatibility Antigens genetics, Minor Histocompatibility Antigens metabolism, Mutation, Nuclear Pore metabolism, Nuclear Pore Complex Proteins genetics, Nuclear Pore Complex Proteins metabolism, RNA Interference, Time-Lapse Imaging methods, Fluorescence, Green Fluorescent Proteins chemistry, Nuclear Pore chemistry, Nuclear Pore Complex Proteins chemistry, Transfection
- Abstract
We report here an image-based method to quantify the stoichiometry of diffraction-limited sub-cellular protein complexes in vivo under spinning disk confocal microscopy. A GFP single molecule fluorescence standard was first established by immobilizing His-tagged GFP molecules onto the glass surface via nickel nitrilotriacetic acid functionalized polyethylene glycol. When endogenous nucleoporins were knocked down and replaced by the exogenously expressed and knockdown-resistant GFP-nucleoporins, the stoichiometry of the nucleoporin was estimated by the ratio of its fluorescence intensity to that of the GFP single molecules. Our measured stoichiometry of Nup35, Nup93, Nup133 and Nup88 is 23, 18, 14 and 9 and there are possibly16 copies of Nup107-160 complex per nuclear pore complex., (Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
40. Quantification of CD4(+) T Cell Alloreactivity and Its Control by Regulatory T Cells Using Time-Lapse Microscopy and Immune Synapse Detection.
- Author
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Juvet SC, Sanderson S, Hester J, Wood KJ, and Bushell A
- Subjects
- Animals, Dendritic Cells immunology, Graft Rejection etiology, Graft Survival immunology, Immune Tolerance immunology, Mice, Mice, Inbred C57BL, Mice, Inbred CBA, CD4-Positive T-Lymphocytes immunology, Graft Rejection diagnosis, Heart Transplantation adverse effects, Immunological Synapses immunology, Isoantigens immunology, T-Lymphocytes, Regulatory immunology, Time-Lapse Imaging methods
- Abstract
Assays designed to select transplant recipients for immunosuppression withdrawal have met with limited success, perhaps because they measure events downstream of T cell-alloantigen interactions. Using in vitro time-lapse microscopy in a mouse transplant model, we investigated whether transplant outcome would result in changes in the proportion of CD4(+) T cells forming prolonged interactions with donor dendritic cells. By blocking CD4-MHC class II and CD28-B7 interactions, we defined immunologically relevant interactions as those ≥500 s. Using this threshold, T cell-dendritic cell (T-DC) interactions were examined in rejection, tolerance and T cell control mediated by regulatory T cells. The frequency of T-DC contacts ≥500 s increased with T cells from mice during acute rejection and decreased with T cells from mice rendered unresponsive to alloantigen. Regulatory T cells reduced prolonged T-DC contacts. Importantly, this effect was replicated with human polyclonally expanded naturally occurring regulatory T cells, which we have previously shown can control rejection of human tissues in humanized mouse models. Finally, in a proof-of-concept translational context, we were able to visualize differential allogeneic immune synapse formation in polyclonal CD4(+) T cells using high-throughput imaging flow cytometry., (© 2015 The Authors. American Journal of Transplantation published by Wiley Periodicals, Inc. on behalf of American Society of Transplant Surgeons.)
- Published
- 2016
- Full Text
- View/download PDF
41. In vivo time-lapse imaging reveals extensive neural crest and endothelial cell interactions during neural crest migration and formation of the dorsal root and sympathetic ganglia.
- Author
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George L, Dunkel H, Hunnicutt BJ, Filla M, Little C, Lansford R, and Lefcort F
- Subjects
- Alzheimer Disease metabolism, Amyotrophic Lateral Sclerosis metabolism, Animals, Animals, Genetically Modified, Bacterial Proteins metabolism, Body Patterning, Cell Communication, Cell Movement, Coturnix, Ganglia, Spinal cytology, Gene Expression Regulation, Developmental, Immunohistochemistry, Luminescent Proteins metabolism, Neural Crest cytology, Stem Cells cytology, Endothelial Cells cytology, Ganglia, Spinal embryology, Microscopy methods, Neural Crest embryology, Peripheral Nervous System embryology, Sympathetic Nervous System embryology, Time-Lapse Imaging methods
- Abstract
During amniote embryogenesis the nervous and vascular systems interact in a process that significantly affects the respective morphogenesis of each network by forming a "neurovascular" link. The importance of neurovascular cross-talk in the central nervous system has recently come into focus with the growing awareness that these two systems interact extensively both during development, in the stem-cell niche, and in neurodegenerative conditions such as Alzheimer's Disease and Amyotrophic Lateral Sclerosis. With respect to the peripheral nervous system, however, there have been no live, real-time investigations of the potential relationship between these two developing systems. To address this deficit, we used multispectral 4D time-lapse imaging in a transgenic quail model in which endothelial cells (ECs) express a yellow fluorescent marker, while neural crest cells (NCCs) express an electroporated red fluorescent marker. We monitored EC and NCC migration in real-time during formation of the peripheral nervous system. Our time-lapse recordings indicate that NCCs and ECs are physically juxtaposed and dynamically interact at multiple locations along their trajectories. These interactions are stereotypical and occur at precise anatomical locations along the NCC migratory pathway. NCCs migrate alongside the posterior surface of developing intersomitic vessels, but fail to cross these continuous streams of motile ECs. NCCs change their morphology and migration trajectory when they encounter gaps in the developing vasculature. Within the nascent dorsal root ganglion, proximity to ECs causes filopodial retraction which curtails forward persistence of NCC motility. Overall, our time-lapse recordings support the conclusion that primary vascular networks substantially influence the distribution and migratory behavior of NCCs and the patterned formation of dorsal root and sympathetic ganglia., (Published by Elsevier Inc.)
- Published
- 2016
- Full Text
- View/download PDF
42. Mechanical forces drive neuroblast morphogenesis and are required for epidermal closure.
- Author
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Wernike D, Chen Y, Mastronardi K, Makil N, and Piekny A
- Subjects
- Animals, Animals, Genetically Modified, Biomechanical Phenomena, Cadherins genetics, Cadherins metabolism, Caenorhabditis elegans cytology, Caenorhabditis elegans embryology, Caenorhabditis elegans metabolism, Caenorhabditis elegans Proteins genetics, Caenorhabditis elegans Proteins metabolism, Cell Movement, Cell Proliferation, Embryo, Nonmammalian cytology, Embryo, Nonmammalian embryology, Epidermis embryology, Microscopy, Fluorescence methods, Mutation, Myosins genetics, Myosins metabolism, RNA Interference, Time-Lapse Imaging methods, alpha Catenin genetics, alpha Catenin metabolism, Embryo, Nonmammalian metabolism, Epidermis metabolism, Luminescent Proteins genetics, Luminescent Proteins metabolism, Morphogenesis, Neural Stem Cells metabolism
- Abstract
Tissue morphogenesis requires myosin-dependent events such as cell shape changes and migration to be coordinated between cells within a tissue, and/or with cells from other tissues. However, few studies have investigated the simultaneous morphogenesis of multiple tissues in vivo. We found that during Caenorhabditis elegans ventral enclosure, when epidermal cells collectively migrate to cover the ventral surface of the embryo, the underlying neuroblasts (neuronal precursor cells) also undergo morphogenesis. We found that myosin accumulates as foci along the junction-free edges of the ventral epidermal cells to form a ring, whose closure is myosin-dependent. We also observed the accumulation of myosin foci and the adhesion junction proteins E-cadherin and α-catenin in the underlying neuroblasts. Myosin may help to reorganize a subset of neuroblasts into a rosette-like pattern, and decrease their surface area as the overlying epidermal cells constrict. Since myosin is required in the neuroblasts for ventral enclosure, we propose that mechanical forces in the neuroblasts influence constriction of the overlying epidermal cells. In support of this model, disrupting neuroblast cell division or altering their fate influences myosin localization in the overlying epidermal cells. The coordination of myosin-dependent events and forces between cells in different tissues could be a common theme for coordinating morphogenetic events during metazoan development., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
43. Combining Optical Reporter Proteins with Different Half-lives to Detect Temporal Evolution of Hypoxia and Reoxygenation in Tumors.
- Author
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Danhier P, Krishnamachary B, Bharti S, Kakkad S, Mironchik Y, and Bhujwalla ZM
- Subjects
- Animals, Blotting, Western, Cell Hypoxia, Cell Line, Tumor, Cycloheximide pharmacology, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Humans, Hypoxia, Hypoxia-Inducible Factor 1, alpha Subunit genetics, Hypoxia-Inducible Factor 1, alpha Subunit metabolism, Luciferases genetics, Luciferases metabolism, Luminescent Proteins genetics, Luminescent Proteins metabolism, Male, Mice, Nude, Microscopy, Fluorescence, Oxygen metabolism, Prostatic Neoplasms drug therapy, Prostatic Neoplasms metabolism, Protein Synthesis Inhibitors pharmacology, Time-Lapse Imaging methods, Transplantation, Heterologous, Red Fluorescent Protein, Gene Expression Regulation, Neoplastic drug effects, Oxygen pharmacology, Prostatic Neoplasms genetics, Response Elements genetics
- Abstract
Here we have developed a hypoxia response element driven imaging strategy that combined the hypoxia-driven expression of two optical reporters with different half-lives to detect temporal changes in hypoxia and hypoxia inducible factor (HIF) activity. For this purpose, human prostate cancer PC3 cells were transfected with the luciferase gene fused with an oxygen-dependent degradation domain (ODD-luc) and a variant of the enhanced green fluorescent protein (EGFP). Both ODD-luciferase and EGFP were under the promotion of a poly-hypoxia-response element sequence (5xHRE). The cells constitutively expressed tdTomato red fluorescent protein. For validating the imaging strategy, cells were incubated under hypoxia (1% O2) for 48 hours and then reoxygenated. The luciferase activity of PC3-HRE-EGFP/HRE-ODD-luc/tdtomato cells detected by bioluminescent imaging rapidly decreased after reoxygenation, whereas EGFP levels in these cells remained stable for several hours. After in vitro validation, PC3-HRE-EGFP/HRE-ODD-luc/tdtomato tumors were implanted subcutaneously and orthotopically in nude male mice and imaged in vivo and ex vivo using optical imaging in proof-of-principle studies to demonstrate differences in optical patterns between EGFP expression and bioluminescence. This novel "timer" imaging strategy of combining the short-lived ODD-luciferase and the long-lived EGFP can provide a time frame of HRE activation in PC3 prostate cancer cells and will be useful to understand the temporal changes in hypoxia and HIF activity during cancer progression and following treatments including HIF targeting strategies., (Copyright © 2015 Nencki Institute of Experimental Biology, Polish Academy of Sciences,. Published by Elsevier Inc. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
44. Quantitative comparison of multiframe data association techniques for particle tracking in time-lapse fluorescence microscopy.
- Author
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Smal I and Meijering E
- Subjects
- Algorithms, Image Enhancement methods, Machine Learning, Reproducibility of Results, Sensitivity and Specificity, Subtraction Technique, Cell Tracking methods, Image Interpretation, Computer-Assisted methods, Microscopy, Fluorescence methods, Microscopy, Video methods, Pattern Recognition, Automated methods, Time-Lapse Imaging methods
- Abstract
Biological studies of intracellular dynamic processes commonly require motion analysis of large numbers of particles in live-cell time-lapse fluorescence microscopy imaging data. Many particle tracking methods have been developed in the past years as a first step toward fully automating this task and enabling high-throughput data processing. Two crucial aspects of any particle tracking method are the detection of relevant particles in the image frames and their linking or association from frame to frame to reconstruct the trajectories. The performance of detection techniques as well as specific combinations of detection and linking techniques for particle tracking have been extensively evaluated in recent studies. Comprehensive evaluations of linking techniques per se, on the other hand, are lacking in the literature. Here we present the results of a quantitative comparison of data association techniques for solving the linking problem in biological particle tracking applications. Nine multiframe and two more traditional two-frame techniques are evaluated as a function of the level of missing and spurious detections in various scenarios. The results indicate that linking techniques are generally more negatively affected by missing detections than by spurious detections. If misdetections can be avoided, there appears to be no need to use sophisticated multiframe linking techniques. However, in the practically likely case of imperfect detections, the latter are a safer choice. Our study provides users and developers with novel information to select the right linking technique for their applications, given a detection technique of known quality., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
45. The planar cell polarity effector protein Wdpcp (Fritz) controls epithelial cell cortex dynamics via septins and actomyosin.
- Author
-
Park TJ, Kim SK, and Wallingford JB
- Subjects
- Animals, Cell Membrane physiology, Cell Membrane ultrastructure, Cell Movement, Cell Polarity genetics, Embryo, Nonmammalian, Epithelial Cells metabolism, Female, Glycoproteins genetics, Imaging, Three-Dimensional methods, Intracellular Signaling Peptides and Proteins, Mesenchymal Stem Cells physiology, Time-Lapse Imaging methods, Xenopus laevis, Actomyosin metabolism, Cell Polarity physiology, Epithelial Cells physiology, Glycoproteins physiology, Septins metabolism
- Abstract
Planar cell polarity (PCP) signaling controls polarized behaviors in diverse tissues, including the collective cell movements of gastrulation and the planar polarized beating of motile cilia. A major question in PCP signaling concerns the mechanisms linking this signaling cascade with more general cytoskeletal elements to drive polarized behavior. Previously, we reported that the PCP effector protein Wdpcp (formerly known as Fritz) interacts with septins and is critical for collective cell migration and cilia formation. Here, we report that Wdpcp is broadly involved in maintaining cortical tension in epithelial cells. In vivo 3D time-lapse imaging revealed that Wdpcp is necessary for basolateral plasma membrane stability in epithelial tissues, and we further show that Wdpcp controls cortical septin localization to maintain cortical rigidity in mucociliary epithelial cells. Finally, we show that Wdpcp acts via actomyosin to maintain balanced cortical tension in the epithelium. These data suggest that, in addition to its role in controlling plasma membrane dynamics in collective mesenchymal cell movements, Wdpcp is also essential for normal cell cortex stability during epithelial homeostasis., (Copyright © 2014. Published by Elsevier Inc.)
- Published
- 2015
- Full Text
- View/download PDF
46. Computer-automated time-lapse analysis results correlate with embryo implantation and clinical pregnancy: a blinded, multi-centre study.
- Author
-
VerMilyea MD, Tan L, Anthony JT, Conaghan J, Ivani K, Gvakharia M, Boostanfar R, Baker VL, Suraj V, Chen AA, Mainigi M, Coutifaris C, and Shen S
- Subjects
- Female, Humans, Pregnancy, Pregnancy Outcome, Retrospective Studies, United States, Embryo Implantation physiology, Embryo, Mammalian cytology, Image Processing, Computer-Assisted methods, Reproductive Techniques, Assisted, Time-Lapse Imaging methods
- Abstract
Computer-automated time-lapse analysis has been shown to improve embryo selection by providing quantitative and objective information to supplement traditional morphology. In this multi-centre study, the relationship between such computer-derived outputs (High, Medium, Low scores), embryo implantation and clinical pregnancy were examined. Data were collected from six clinics, including 205 patients whose embryos were imaged by the Eeva(TM) System. The Eeva scores were blinded and not considered during embryo selection. Embryos with High and Medium scores had significantly higher implantation rates than those with Low scores (37% and 35% versus 15%; P < 0.0001; P = 0.0004). Similar trends in implantation rates were observed in different IVF centres each using their own protocols. Further analysis revealed that patients with at least one High embryo transferred had significantly higher clinical pregnancy rates than those with only Low embryos transferred (51% versus 34%; P = 0.02), although patients' clinical characteristics across groups were comparable. These data, together with previous research and clinical studies, confirm that computer-automated Eeva scores provide valuable information, which may improve the clinical outcome of IVF procedures and ultimately facilitate the trend of single embryo selection., (Copyright © 2014 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
47. Temporal models for mitotic phase labelling.
- Author
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El-Labban A, Zisserman A, Toyoda Y, Bird AW, and Hyman A
- Subjects
- Algorithms, Artificial Intelligence, Markov Chains, Models, Biological, Models, Statistical, Pattern Recognition, Automated methods, Reproducibility of Results, Sensitivity and Specificity, Cell Tracking methods, Image Enhancement methods, Microscopy, Fluorescence, Mitosis physiology, Time-Lapse Imaging methods
- Abstract
With the widespread use of time-lapse data to understand cellular function, there is a need for tools which facilitate high-throughput analysis of data. Fluorescence microscopy of genetically engineered cell lines in culture can be used to visualise the progression of these cells through the cell cycle, including distinctly identifiable sequential stages of cell division (mitotic phases). We present a system for automated segmentation and mitotic phase labelling using temporal models. This work takes the novel approach of using temporal features evaluated over the whole of the mitotic phases rather than over single frames, thereby capturing the distinctive behaviour over the phases. We compare and contrast three different temporal models: Dynamic Time Warping, Hidden Markov Models, and Semi Markov Models. A new loss function is proposed for the Semi Markov model to make it more robust to inconsistencies in data annotation near transition boundaries. The models are tested under two different experimental conditions to explore robustness to changes in biological conditions., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
48. Astrocytic gap junctional networks suppress cellular damage in an in vitro model of ischemia.
- Author
-
Shinotsuka T, Yasui M, and Nuriya M
- Subjects
- Animals, Astrocytes drug effects, Astrocytes metabolism, Calcium Signaling drug effects, Carbenoxolone pharmacology, Cell Hypoxia, Cerebral Cortex cytology, Chelating Agents pharmacology, Egtazic Acid analogs & derivatives, Egtazic Acid pharmacology, Female, Gap Junctions drug effects, Gap Junctions metabolism, Glucose metabolism, Glucose pharmacology, Ischemia metabolism, Male, Membrane Potentials drug effects, Membrane Potentials physiology, Mice, Mice, Inbred C57BL, Microscopy, Fluorescence, Multiphoton, Purinergic P2 Receptor Antagonists pharmacology, Pyridines pharmacology, Receptor, Metabotropic Glutamate 5 antagonists & inhibitors, Receptor, Metabotropic Glutamate 5 physiology, Receptors, Purinergic P2 physiology, Suramin pharmacology, Time-Lapse Imaging methods, Astrocytes physiology, Gap Junctions physiology, Ischemia physiopathology, Models, Biological
- Abstract
Astrocytes play pivotal roles in both the physiology and the pathophysiology of the brain. They communicate with each other via extracellular messengers as well as through gap junctions, which may exacerbate or protect against pathological processes in the brain. However, their roles during the acute phase of ischemia and the underlying cellular mechanisms remain largely unknown. To address this issue, we imaged changes in the intracellular calcium concentration ([Ca(2+)]i) in astrocytes in mouse cortical slices under oxygen/glucose deprivation (OGD) condition using two-photon microscopy. Under OGD, astrocytes showed [Ca(2+)]i oscillations followed by larger and sustained [Ca(2+)]i increases. While the pharmacological blockades of astrocytic receptors for glutamate and ATP had no effect, the inhibitions of gap junctional intercellular coupling between astrocytes significantly advanced the onset of the sustained [Ca(2+)]i increase after OGD exposure. Interestingly, the simultaneous recording of the neuronal membrane potential revealed that the onset of the sustained [Ca(2+)]i increase in astrocytes was synchronized with the appearance of neuronal anoxic depolarization. Furthermore, the blockade of gap junctional coupling resulted in a concurrent faster appearance of neuronal depolarizations, which remain synchronized with the sustained [Ca(2+)]i increase in astrocytes. These results indicate that astrocytes delay the appearance of the pathological responses of astrocytes and neurons through their gap junction-mediated intercellular network under OGD. Thus, astrocytic gap junctional networks provide protection against tissue damage during the acute phase of ischemia., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
49. Patenting time-lapse microscopy: the European story.
- Author
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Sterckx S, Cockbain J, and Pennings G
- Subjects
- European Union, Humans, Embryo, Mammalian anatomy & histology, Microscopy methods, Patents as Topic legislation & jurisprudence, Reproductive Techniques, Assisted legislation & jurisprudence, Time-Lapse Imaging methods
- Abstract
European Patent No. 2430454 of Stanford University is open to opposition before the European Patent Office if such opposition is filed by 23 October 2013. This is the European equivalent of the US Patent that raised such controversy in this journal in August 2013 as being a patent on time. The European Patent, which is directed to a method of selecting embryos for implantation using the results of time-lapse microscopy, should, in the present authors' opinion, be revoked as being directed to a method of medical diagnosis, which is unpatentable under European patent law. The only party currently opposing Stanford's patent is a competitor, Unisense FertiliTech A/S which is itself seeking to patent similar methods in Europe; the objection that Stanford has patented a method of diagnosis has not been raised by Unisense FertiliTech. We submit that Stanford's patent should be opposed to safeguard competition and to protect the freedom to operate of clinicians. In this paper we explain how Stanford's patent should fail under European law., (Copyright © 2013 Reproductive Healthcare Ltd. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
50. Response: Stanford University's patent on embryo selection should be excluded under European patent law.
- Author
-
Sterckx S, Pennings G, and Cockbain J
- Subjects
- Humans, Embryo, Mammalian anatomy & histology, Microscopy methods, Patents as Topic legislation & jurisprudence, Reproductive Techniques, Assisted legislation & jurisprudence, Time-Lapse Imaging methods
- Published
- 2014
- Full Text
- View/download PDF
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