1. Conformational Polymorphism of d(A-G)n and Related Oligonucleotide Sequences
- Author
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Nina G. Dolinnaya and Jacques R. Fresco
- Subjects
Genetics ,chemistry.chemical_compound ,chemistry ,Oligonucleotide ,Stereochemistry ,Biological significance ,RNA ,Sequence (biology) ,Biology ,Conformational polymorphism ,Conformational isomerism ,DNA - Abstract
Publisher Summary This chapter describes and rationalizes the several equilibria that underlie the conformational polymorphism of d(A-G) n . It describes each of the equilibria along with the properties of their participating conformers. Additionally, as various of these d(A-G) n conformations seem to share the physical–chemical properties with naturally occurring irregular, nonrepetitive, homopurine sequences in both DNA and RNA, the chapter presents the use of more readily interpretable properties of the regular d(A-G) n repeat to extrapolate structure for those irregular sequences and vice versa. The chapter describes five discrete conformations undertaken by the sequence d(A-G) n between n=6 and 30, and the equilibria between the different conformers. It is noted that the knowledge gained from studies of the multiple conformations available to d(A-G) n sequences such as those occurring in strand segments of one or the other complementary strands of DNA, along with the indications of their biological significance, should pave the way for the possibility of other repetitive strand elements whose conformational potential may have other functional consequences.
- Published
- 2003
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