54 results on '"Pal T"'
Search Results
2. Assessing the effects of long-term habitat reconstruction on breeding shorebird populations in a steppe region
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Tamás Zalai, József Katona, Pál Tóth, Zsolt Végvári, and Balázs A. Lukács
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Shorebird ,Restoration ,Long-term ,Population size ,Ecology ,QH540-549.5 - Abstract
Shorebirds represent key indicator species for evaluating the health of wetlands, as they rely on specific habitats for breeding and foraging. Several restoration actions were initiated to restore these wetlands in the Hortobágy (Hungary), however, their effects have never been assessed. Since birds are good indicators of the health and quality of natural environment and sensitive to changes in land use and climate, we evaluated the restoration actions conducted in the last 20 years using bird monitoring data. Our study focuses on the long-term effects of different habitat restoration actions implemented in the region, which involved no restoration, targeted and non-targeted type of interventions for shorebird management as well as long-term and short-term management. The evaluation is based on long-term monitoring data of shorebird species: Black-winged Stilt, Northern Lapwing, Black-tailed Godwit, Common Redshank and Common Snipe. The effectiveness of restoration actions found to have a species-specific aspect, but in general, our findings indicate positive effects of targeted and long-term restoration actions on breeding shorebird populations. By contrast, targeted but short-term actions led to even worse results for shorebird breeding population size than where no restoration actions were initiated. These findings contribute to a better understanding of the specific habitat requirements of breeding shorebirds in the steppe region and can inform future habitat management strategies. The results can be used in conservation planning and management and highlight the importance of long-term and targeted habitat reconstruction projects in restoring and maintaining breeding shorebird populations.
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- 2024
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3. Synthesis, biochemical, pharmacological characterization and in silico profile modelling of highly potent opioid orvinol and thevinol derivatives
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Szucs, Edina, Marton, Janos, Szabo, Zoltan, Hosztafi, Sandor, Kekesi, Gabriella, Tuboly, Gabor, Banki, Laszlo, Horvath, Gyongyi, Szabo, Pal T., Tomboly, Csaba, Varga, Zsuzsanna Katalin, Benyhe, Sandor, Otvos, Ferenc, Szucs, Edina, Marton, Janos, Szabo, Zoltan, Hosztafi, Sandor, Kekesi, Gabriella, Tuboly, Gabor, Banki, Laszlo, Horvath, Gyongyi, Szabo, Pal T., Tomboly, Csaba, Varga, Zsuzsanna Katalin, Benyhe, Sandor, and Otvos, Ferenc
- Abstract
Morphine and its derivatives play inevitably important role in the m-opioid receptor (MOR) targeted antinociception. A structure-activity relationship study is presented for novel and known orvinol and thevinol derivatives with varying 3-O, 6-O, 17-N and 20-alkyl substitutions starting from agonists, antagonists and partial agonists. In vitro competition binding experiments with [H-3]DAMGO showed low subnanomolar affinity to MOR. Generally, 6-O-demethylation increased the affinity toward MOR and decreased the efficacy changing the pharmacological profile in some cases. In vivo tests in osteoarthritis inflammation model showed significant antiallodynic effects of thevinol derivatives while orvinol derivatives did not. The pharmacological character was modelled by computational docking to both active and inactive state models of MOR. Docking energy difference for the two states separates agonists and antagonists well while partial agonists overlapped with them. An interaction pattern of the ligands, involving the interacting receptor atoms, showed more efficient separation of the pharmacological profiles. In rats, thevinol derivatives showed antiallodynic effect in vivo. The orvinol derivatives, except for 6-O-desmethyl-dihydroetorfin (2c), did not show antiallodynic effect., QC 20200429
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- 2020
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4. Impact of domestic packaging and storage on shelflife and sensory quality of organic and conventional Cucumus sativus L
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Das Suryatapa, Roy Lakshmishri, Chatterjee Annalakshmi, and Pal Tapan Kumar
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Organic ,Conventional ,Cucumis sativus ,QDA ,PCA ,Fuzzy logic ,Food processing and manufacture ,TP368-456 - Abstract
Organic food is preferred than conventionally grown foods, for their nutritional benefits with better sensory values. The impact of storage of organic and conventional Cucumis sativus L. in different domestic packaging at temperatures and durations on the shelf life and sensory qualities was studied. Results showed that packaging had significant effect on the shelf life of both organic and conventional Cucumis during storage. The triangle difference test showed significant difference between organic and conventional Cucumis stored in different packaging and storage temperatures. The Quantitative Descriptive Analysis by Principal Component Analysis showed that the strongly correlated attributes were total smell, sweet taste, and size, and fresh smell and bitter taste. The organic and conventional Cucumis stored in cling film showed highest preference in the affective study. Therefore, storage in domestic packaging can be considered as a strategy for increasing shelf life and sensory quality organic and conventional Cucumis.
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- 2023
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5. FLIIMP - a community software for the processing, calibration, and reporting of liquid water isotope measurements on cavity-ring down spectrometers
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Harald Sodemann, Pål Tore Mørkved, and Sonja Wahl
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Post-processing and calibration of stable water isotope composition in liquid samples ,Science - Abstract
Precise and accurate measurements of the stable isotope composition from precipitation, land ice, runoff, and oceans provide critical information on Earth's water cycle. The analysis, post-processing, and calibration of raw analytical signals from laser spectrometers during sample analysis involves a number of critical procedures to counteract instrumental drift, inter-sample memory effects, and the quantification of total uncertainty. We present a new software tool for the post-processing and calibration named FLIIMP (FARLAB Liquid Water Isotope Measurement Processor). FLIIMP facilitates sample processing by (1) a graphical user interface that guides the user along the processing steps from corrections for memory effects, drift, and mixing ratio to calibration, and (2) allows to monitor long-term measurement system behaviour, currently for Picarro-brand water isotope analysers. Final data files are accompanied by a detailed calibration report. Being an open-source software for the major operating systems, users can adapt FLIIMP to their laboratory environment, and the community can contribute the software development. • FLIIMP facilitates post-processing, calibration and reporting for stable water isotope liquid sample analysis. • The stepwise, interactive graphical user interface reduces possibility of errors and shortens processing time. • Open source software enables future development of FLIIMP by the user community.
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- 2023
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6. Novel combinatory method for surface and crystallinity analysis of crystalline materials
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Vladyslav Matkivskyi, Arne Karstein Røyset, Gaute Stokkan, Pål Tetlie, Marisa Di Sabatino, and Gabriella Tranell
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Combinatory analysis method for crystalline materials surface ,Science - Abstract
This work is dedicated to developing a method of combined surface morphology- and crystallographic analysis for crystalline silicon. To demonstrate the applicability of the method, a series of chemical operations, such as polishing and texturing, were applied to multi-crystalline silicon samples. The samples were pre- and post-analysed with WLI and Laue techniques, and the experimental data allowed construction of maps for crystal orientation to etching rate dependency. The study illustrates the strengths of the combinatory technique as an alternative to existing techniques such as atom force microscopy (AFM) and electron backscatter diffraction (EBSD). • Combination of LAUE tool and white light interferometry techniques. • Alternative time-effective method to EBSD. • Analysis of surface morphology and crystallographic properties for chemical processing.
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- 2023
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7. Synthesis, characterization, and challenges faced during the preparation of zirconium pillared clays
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Tanya Chauhan, Mahitha Udayakumar, Mohammed Ahmed Shehab, Ferenc Kristály, Anett Katalin Leskó, Martin Ek, David Wahlqvist, Pál Tóth, Klara Hernadi, and Zoltán Németh
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Montmorillonite ,Zr-PILCs ,Pillaring ,Sodium-saturated montmorillonite ,Specific surface area ,Basal spacing ,Chemistry ,QD1-999 - Abstract
In this study, Zr-pillared montmorillonite clays (Zr-PILCs) were synthesized using two different precursor materials: raw montmorillonite (CM) and sodium ion-saturated montmorillonite (Na-CM) at different Zr/clay ratios (2.5, 5 and 10 mmol/g). To study the effect of Zr concentration and clay pre-treatment with NaCl on pillaring, the modified clay samples were characterized in detail using X-ray diffraction (XRD), Fourier transform infrared spectroscopy (FT-IR), thermogravimetric analysis (TGA), high-resolution transmission electron microscopy (HRTEM), scanning transmission electron microscopy and energy-dispersive X-ray spectroscopy (STEM-EDX). The XRD analysis showed the increase of basal spacing of Zr-PILCs prepared from both precursor materials: from 1.26 to 1.74 nm in the case of CM, and from 1.13 to 1.93 nm for Na-CM. Results from FT-IR revealed new bands ascribed to Zr-O bonds in the range of 400–500 cm−1 in Zr-pillared samples obtained from Na-CM at Zr/clay ratios of 2.5 and 5 mmol/g. The distribution and nature of Zr species in between the silicate layers were studied using STEM-EDX and HAADF imaging. They were found to be separated by a distance of 1.5–3 nm and their thickness lies in the range of 1–2 nm. Pillared clays prepared from pre-treatment with NaCl were more thermally stable at higher temperatures.
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- 2022
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8. Cationic copper (I) complexes with bulky 1,4-diaza-1,3-butadiene ligands - Synthesis, solid state structure and catalysis
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Anga, S, Kottalanka, R K, Pal, T, Panda, Tarun K, Anga, S, Kottalanka, R K, Pal, T, and Panda, Tarun K
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We report the full characterization of two glyoxal-based ligands N,N bis(diphenylmethyl)-1,4-diaza-1,3-butadiene ligand (DADPh2, 1) and more bulky N,N bis(triphenylmethyl)-1,4-diaza-1,3-butadiene ligand (DAD Ph3, 2) by the condensation reaction of glyoxal and diphenylmethanamine and triphenyl-methanamine respectively. The copper (I) complex of composition [Cu(DADPh2)2]PF6 (3) having two neutral bidentate N,N bis(diphenyl-methyl)-1,4-diaza-1,3-butadiene ligand was prepared by the reaction of [Cu(CH3CN)4]PF 6 and 1 in 1:2 ratio in dichloromethane. In a similar reaction with N,N bis(triphenylmethyl)-1,4-diaza-1,3-butadiene ligand (2) and [Cu(CH 3CN)4]PF6 in dichloromethane yielded corresponding heteroleptic copper (I) complex [Cu(DADPh3)(CH 3CN)2]PF6 (4). Another copper (I) complex [Cu(DADPh2)(PPh3)]PF6 (5) can also be obtained by the one pot reaction involving ligand 1, [Cu(CH3CN) 4]PF6 and triphenylphosphine. Solid state structures of all the five compounds were established by single crystal X-ray diffraction analysis. The solid state structures of the copper complexes 3-5 reveal a distorted tetrahedral geometry around the copper (I) centers. The copper complexes 3-5 were tested as catalysts for the coupling reaction of o-iodophenol and phenyl acetylene and it was observed that complex 4 exhibits the highest catalytic activity
- Published
- 2013
9. Capillary forces as a limiting factor for sawing of ultrathin silicon wafers by diamond multi-wire saw
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Birgit Ryningen, Pål Tetlie, Sverre Gullikstad Johnsen, and Halvor Dalaker
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Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Succeeding with ultrathin silicon wafer sawing by diamond multi-wire saw, is not only a matter of optimization; the challenges of thin wafer production and the capability limit have not yet been fully understood. In this work, we have seen that regular pairing of wires occurs when the wire-wire separation distance is reduced below some critical value. The wire pairing leads to wire jumps on the wire guide rolls, and if the run is not stopped, it leads to wire breakage. Moreover, it effectively obstructs the production of wafers thinner than the critical wire-wire distance.We suggest that the physical explanation to the observed limitations to ultrathin wafer sawing, by diamond multi-wire saw, is related to the capillary force acting on the wires due to the sawing liquid bridge connecting the wires. The hypothesis is supported by simplified mathematical modelling including capillary and spring forces between infinitely long, parallel wires. The calculations suggest that capillary forces are the main reason for wire pairing, and that wire pairing will occur when the wire distance is below some critical distance. This matches the observed, experimental behavior. The critical distance will vary with wafer saw design and operation.To succeed with cutting very thin wafers, we recommend using lower surface tension sawing fluid or even dry in-cut, to reduce the capillary forces and thus decrease the critical wire separation distance, and to reduce wire oscillations to decrease the probability of sub-critical wire-wire separation distance. To reduce the vibration amplitude, shorter distance between the wire guide rolls, thinner wires, and increased wire tension are suggested.
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- 2020
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10. Synthesis of activated carbon foams with high specific surface area using polyurethane elastomer templates for effective removal of methylene blue
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Mahitha Udayakumar, Bilal El Mrabate, Tamás Koós, Katalin Szemmelveisz, Ferenc Kristály, Máté Leskó, Ádám Filep, Róbert Géber, Mateusz Schabikowski, Péter Baumli, János Lakatos, Pál Tóth, and Zoltán Németh
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Activated carbon foam ,Polyurethane elastomer ,Specific surface area ,Pore size distribution ,Carbon sphere ,Methylene blue adsorption ,Chemistry ,QD1-999 - Abstract
Carbon foams have gained significant attention due to their tuneable properties that enable a wide range of applications including catalysis, energy storage and wastewater treatment. Novel synthesis pathways enable novel applications via yielding complex, hierarchical material structure. In this work, activated carbon foams (ACFs) were produced from waste polyurethane elastomer templates using different synthesis pathways, including a novel one-step method. Uniquely, the produced foams exhibited complex structure and contained carbon microspheres. The ACFs were synthesized by impregnating the elastomers in an acidified sucrose solution followed by direct activation using CO2 at 1000 ℃. Different pyrolysis and activation conditions were investigated. The ACFs were characterized by a high specific surface area (SBET) of 2172 m2/g and an enhanced pore volume of 1.08 cm3/g. Computer tomography and morphological studies revealed an inhomogeneous porous structure and the presence of numerous carbon spheres of varying sizes embedded in the porous network of the three-dimensional carbon foam. X-ray diffraction (XRD) and Raman spectroscopy indicated that the obtained carbon foam was amorphous and of turbostratic structure. Moreover, the activation process enhanced the surface of the carbon foam, making it more hydrophilic via altering pore size distribution and introducing oxygen functional groups. In equilibrium, the adsorption of methylene blue on ACF followed the Langmuir isotherm model with a maximum adsorption capacity of 592 mg/g. Based on these results, the produced ACFs have potential applications as adsorbents, catalyst support and electrode material in energy storage systems.
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- 2021
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11. Adverse events in a newborn on valproate therapy due to loss-of-function mutations in CYP2C9
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Andrea Nagy, Tamás Bűdi, Manna Temesvári, Zsuzsa Szever, Pál Tamás Szabó, and Katalin Monostory
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Valproate ,CYP2C9 genotype ,Bone marrow depression ,Hyperammonemia ,Pediatric patient ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
An increased risk of valproate-induced toxicity has been reported in children, particularly in those younger than 2 years of age. Significant variations in valproate pharmacokinetics and shifts in the metabolic pathways towards CYP2C9-dependent metabolism seem to play some role in the age-related differences in the incidence of adverse events. We present the case of a premature patient with moderate hemorrhage in the subependymal region (grade II — intraventricular hemorrhage without ventricular dilatation), several myoclonic episodes in her right upper arm (series of jerks lasting milliseconds), and epileptiform abnormalities on the EEG (localized spike-and-wave in the left frontal region with preserved background activity who was treated with valproate. Serious side effects, consisting of bone marrow depression, hyperammonemia, and serum alkaline phosphatase elevation, were observed seventeen days after the beginning of valproate therapy. The toxic symptoms were likely the consequence of a reduced ability to metabolize valproate. The patient was demonstrated to carry two loss-of-function mutations in CYP2C9 (CYP2C9*3/*3) resulting in exaggerated blood concentrations of valproate. The present case highlights the importance of assaying inborn errors in CYP2C9 gene in pediatric patients to avoid valproate-evoked serious side effects.
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- 2015
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12. Validation of a clinical breast cancer risk assessment tool combining a polygenic score for all ancestries with traditional risk factors.
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Mabey B, Hughes E, Kucera M, Simmons T, Hullinger B, Pederson HJ, Yehia L, Eng C, Garber J, Gary M, Gordon O, Klemp JR, Mukherjee S, Vijai J, Offit K, Olopade OI, Pruthi S, Kurian A, Robson ME, Whitworth PW, Pal T, Ratzel S, Wagner S, Lanchbury JS, Taber KJ, Slavin TP, and Gutin A
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- Humans, Female, Risk Assessment methods, Middle Aged, Adult, Risk Factors, Aged, Breast Neoplasms genetics, Breast Neoplasms diagnosis, Multifactorial Inheritance genetics, Genetic Predisposition to Disease, Genetic Testing methods, Genetic Testing standards
- Abstract
Purpose: We previously described a combined risk score (CRS) that integrates a multiple-ancestry polygenic risk score (MA-PRS) with the Tyrer-Cuzick (TC) model to assess breast cancer (BC) risk. Here, we present a longitudinal validation of CRS in a real-world cohort., Methods: This study included 130,058 patients referred for hereditary cancer genetic testing and negative for germline pathogenic variants in BC-associated genes. Data were obtained by linking genetic test results to medical claims (median follow-up 12.1 months). CRS calibration was evaluated by the ratio of observed to expected BCs., Results: Three hundred forty BCs were observed over 148,349 patient-years. CRS was well-calibrated and demonstrated superior calibration compared with TC in high-risk deciles. MA-PRS alone had greater discriminatory accuracy than TC, and CRS had approximately 2-fold greater discriminatory accuracy than MA-PRS or TC. Among those classified as high risk by TC, 32.6% were low risk by CRS, and of those classified as low risk by TC, 4.3% were high risk by CRS. In cases where CRS and TC classifications disagreed, CRS was more accurate in predicting incident BC., Conclusion: CRS was well-calibrated and significantly improved BC risk stratification. Short-term follow-up suggests that clinical implementation of CRS should improve outcomes for patients of all ancestries through personalized risk-based screening and prevention., Competing Interests: Conflict of Interest Brent Mabey, Elisha Hughes, Matthew Kucera, Timothy Simmons, Brooke Hullinger, Sarah Ratzel, Susanne Wagner, Jerry S. Lanchbury, Katherine Johansen Taber, Thomas P. Slavin, and Alexander Gutin were employed by Myriad Genetics, Inc. at the time of the study and received salaries and stocks as compensation. Holly J. Pederson and Monique Gary have received consulting fees from Myriad Genetics, Inc. Charis Eng has ownership interests in MyLegacy/MyFHH/Family Care Path. Judy Garber has received research funding from Ambry Genetics and Invitae and has other relationships, or an immediate family member with relationships, with AACR, Diana Helis Henry Medical Foundation, James P. Wilmot Foundation, Adrianne Helis Malvin Medical Research Foundation, Breast Cancer Research Foundation, Facing our Risk of Cancer Empowered, Novartis, GTx, Aleta BioTherapeutics, H3 Biomedicine, and Kronos Bio. Ora Gordon has had a consulting or advisory role with GRAIL and Genetic Technologies, has received travel or accommodation expenses from GRAIL, and has received research funding from GRAIL. Jennifer R. Klemp has received consulting fees and speakers’ bureaus fees from AstraZeneca, has ownership interests in Cancer Survivorship Training, is employed by Caris Life Sciences, Inc, and has received a salary as compensation and consulting fees. Olufunmilayo I. Olopade has an ownership interest in 54Gene and Tempus, has an ownership interest and has received a salary from CancerIQ, and has other interests in Color Genomics, Healthy Life for All Foundation, and Roche/Genetech. Mark E. Robson has provided clinical trial services to AstraZeneca and Merck and has received consulting fees from and/or been on advisory boards for Change Healthcare, Intellisphere, MyMedEd, Physician’s Education Resources, and Research to Practice. Pat W. Whitworth has received consulting fees from or had contracted research with Agendia, Biotheranostics, Genomic Health, Impedimed, Myriad Genetics, Inc, Prelude, and Veracyte, and has an ownership interest in Medneon. All other authors declare no conflicts of interest., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2024
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13. Response to Stern.
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Hanson H, Astiazaran-Symonds E, Amendola LM, Balmaña J, Foulkes WD, James P, Klugman S, Ngeow J, Schmutzler R, Voian N, Wick MJ, Pal T, Tischkowitz M, and Stewart DR
- Abstract
Competing Interests: Conflict of Interest Funding and support listed here did not support development of this document unless included in the acknowledgements section. H.H. is supported by the Cancer Research CRUK Catalyst Award, CanGene-CanVar the National Institute for Health and Care Research (NIHR) Exeter Biomedical Research Centre (BRC). The views expressed are those of the author and not necessarily those of the NIHR or the Department of Health and Social Care. H.H. has served on advisory boards for AstraZeneca. L.M.A. is an employee and shareholder of Illumina, Inc. W.D.F. is supported by the Canadian Institutes of Health Research. R.S. is supported by the German Cancer Aid and the Federal Ministry of Education and Research (BMBF), Germany. D.R.S. is supported by the Intramural Research Program of the Division of Cancer Epidemiology and Genetics of the National Cancer Institute (NCI), Rockville, Maryland, and also performs contract clinical telehealth services for Genome Medical, Inc. in accordance with relevant NCI ethics policies. The other authors declare no competing interests. The content of this publication does not necessarily reflect the views or policies of the US Department of Health and Human Services, nor does mention of trade names, commercial products or organizations imply endorsement by the US Government.
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- 2024
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14. Factors that differentiate cancer risk management decisions among females with pathogenic/likely pathogenic variants in PALB2, CHEK2, and ATM.
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Dean M, Tezak AL, Johnson S, Weidner A, Almanza D, Pal T, and Cragun DL
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- Humans, Female, Genetic Testing methods, Risk, Risk Management, Checkpoint Kinase 2 genetics, Fanconi Anemia Complementation Group N Protein genetics, Ataxia Telangiectasia Mutated Proteins genetics, Genetic Predisposition to Disease, Neoplasms genetics
- Abstract
Purpose: Following disclosure of pathogenic or likely pathogenic variants in hereditary cancer genes, patients face cancer risk management decisions. Through this mixed-methods study, we investigated cancer risk management decisions among females with pathogenic or likely pathogenic variants in PALB2, CHEK2, and ATM to understand why some patients follow National Comprehensive Cancer Network guidelines, whereas others do not., Methods: Survey and interview data were cross-analyzed using a 3-stage approach. Identified factors were used to conduct coincidence analysis and differentiate between combinations of factors that result in following or not following guidelines., Results: Of the 13 participants who underwent guideline inconsistent prophylactic surgery, 12 fit 1 of 3 unique patterns: (1) cancer-related anxiety in the absence of trust in care, (2) provider recommending surgery inconsistent with National Comprehensive Cancer Network guidelines, or (3) surgery occurring before genetic testing. Two unique patterns were found among 18 of 20 participants who followed guidelines: (1) anxiety along with trust in care or (2) lack of anxiety and no prophylactic surgery before testing., Conclusion: Health care provider recommendations and trust in care may influence whether individuals receive care that is congruent with risk levels conferred by specific genes. Interventions are needed to improve provider knowledge, patient trust in non-surgical care, and patient anxiety., Competing Interests: Conflict of Interest Tuya Pal is on the scientific advisory board of Natera., (Copyright © 2023 American College of Medical Genetics and Genomics. Published by Elsevier Inc. All rights reserved.)
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- 2023
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15. Management of individuals with germline pathogenic/likely pathogenic variants in CHEK2: A clinical practice resource of the American College of Medical Genetics and Genomics (ACMG).
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Hanson H, Astiazaran-Symonds E, Amendola LM, Balmaña J, Foulkes WD, James P, Klugman S, Ngeow J, Schmutzler R, Voian N, Wick MJ, Pal T, Tischkowitz M, and Stewart DR
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- Male, Humans, United States, Genetic Predisposition to Disease, Mastectomy, Checkpoint Kinase 2 genetics, Germ-Line Mutation genetics, Genomics, Breast Neoplasms diagnosis, Genetics, Medical
- Abstract
Purpose: Although the role of CHEK2 germline pathogenic variants in cancer predisposition is well known, resources for managing CHEK2 heterozygotes in clinical practice are limited., Methods: An international workgroup developed guidance on clinical management of CHEK2 heterozygotes informed by peer-reviewed publications from PubMed., Results: Although CHEK2 is considered a moderate penetrance gene, cancer risks may be considered as a continuous variable, which are influenced by family history and other modifiers. Consequently, early cancer detection and prevention for CHEK2 heterozygotes should be guided by personalized risk estimates. Such estimates may result in both downgrading lifetime breast cancer risks to those similar to the general population or upgrading lifetime risk to a level at which CHEK2 heterozygotes are offered high-risk breast surveillance according to country-specific guidelines. Risk-reducing mastectomy should be guided by personalized risk estimates and shared decision making. Colorectal and prostate cancer surveillance should be considered based on assessment of family history. For CHEK2 heterozygotes who develop cancer, no specific targeted medical treatment is recommended at this time., Conclusion: Systematic prospective data collection is needed to establish the spectrum of CHEK2-associated cancer risks and to determine yet-unanswered questions, such as the outcomes of surveillance, response to cancer treatment, and survival after cancer diagnosis., Competing Interests: Conflict of Interest Funding and support listed here did not support development of this document unless included in the acknowledgments section. H.H. is supported by the Cancer Research CRUK Catalyst Award, CanGene-CanVar, and has served on advisory boards for AstraZeneca. R.S. is supported by the German Cancer Aid and the Federal Ministry of Education and Research (BMBF), Germany. M.T. is supported by the National Institute for Health and Care Research (NIHR) Cambridge Biomedical Research Centre. D.R.S. is supported by the Intramural Research Program of the Division of Cancer Epidemiology and Genetics of the National Cancer Institute (NCI), Rockville, Maryland, and also performs contract clinical telehealth services for Genome Medical, Inc., in accordance with relevant NCI ethics policies. All other authors declare no conflicts of interest., (Copyright © 2023 American College of Medical Genetics and Genomics. Published by Elsevier Inc. All rights reserved.)
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- 2023
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16. The spread of the omicron variant: Identification of knowledge gaps, virus diffusion modelling, and future research needs.
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Anand U, Pal T, Zanoletti A, Sundaramurthy S, Varjani S, Rajapaksha AU, Barceló D, and Bontempi E
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- Humans, SARS-CoV-2, China, COVID-19 epidemiology, Air Pollution
- Abstract
The World Health Organization (WHO) recognised variant B.1.1.529 of the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) as a variant of concern, termed "Omicron", on November 26, 2021. Its diffusion was attributed to its several mutations, which allow promoting its ability to diffuse worldwide and its capability in immune evasion. As a consequence, some additional serious threats to public health posed the risk to undermine the global efforts made in the last two years to control the pandemic. In the past, several works were devoted to discussing a possible contribution of air pollution to the SARS-CoV-2 spread. However, to the best of the authors' knowledge, there are still no works dealing with the Omicron variant diffusion mechanisms. This work represents a snapshot of what we know right now, in the frame of an analysis of the Omicron variant spread. The paper proposes the use of a single indicator, commercial trade data, to model the virus spread. It is proposed as a surrogate of the interactions occurring between humans (the virus transmission mechanism due to human-to-human contacts) and could be considered for other diseases. It allows also to explain the unexpected increase in infection cases in China, detected at beginning of 2023. The air quality data are also analyzed to evaluate for the first time the role of air particulate matter (PM) as a carrier of the Omicron variant diffusion. Due to emerging concerns associated with other viruses (such as smallpox-like virus diffusion in Europe and America), the proposed approach seems to be promising to model the virus spreading., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Inc. All rights reserved.)
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- 2023
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17. Anxiety and depression among Black breast cancer survivors: Examining the role of patient-provider communication and cultural values.
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Lake PW, Conley CC, Pal T, Sutton SK, and Vadaparampil ST
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- Anxiety psychology, Communication, Cross-Sectional Studies, Depression psychology, Female, Humans, Survivors psychology, Breast Neoplasms psychology, Breast Neoplasms therapy, Cancer Survivors psychology
- Abstract
Objective: Breast cancer survivors frequently experience anxiety and depression post-treatment. Patient-provider communication and cultural values may impact these psychological outcomes. We examined the impact of patient-provider communication and cultural values on anxiety and depression among Black breast cancer survivors., Methods: Using an observational, cross-sectional design, 351 survivors self-reported patient-provider communication (quality, confidence), cultural values (religiosity, collectivism, future time orientation), anxiety, and depression. Patients were categorized into high, moderate, and low levels of communication and cultural values. Separate linear regressions examined the effect of levels of communication and cultural values on anxiety and depression, controlling for sociodemographic variables., Results: A subset of breast cancer survivors reported clinically significant symptoms of anxiety (40%) and depression (20%). Communication was associated with anxiety (β = -0.14, p = 0.01) and depression (β = -0.10, p = 0.04). Specifically, women reporting higher levels of communication quality/confidence reported lower levels of anxiety and depression. There was a trend towards a significant association between cultural values and depression (β = -0.09, p = 0.06)., Conclusions: Black breast cancer survivors experience poor psychological functioning. Effective patient-provider communication may reduce anxiety and depression post-treatment., Practice Implications: Patient-provider relationships and patient empowerment may be key components of cancer survivorship. Special attention should be paid to patient-centered communication for Black breast cancer survivors., (Copyright © 2022 Elsevier B.V. All rights reserved.)
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- 2022
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18. Evaluating breast cancer predisposition genes in women of African ancestry.
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Díaz-Zabala H, Guo X, Ping J, Wen W, Shu XO, Long J, Lipworth L, Li B, Fadden MK, Pal T, Blot WJ, Cai Q, Haiman CA, Palmer JR, Sanderson M, and Zheng W
- Subjects
- Case-Control Studies, Female, Genes, BRCA2, Genetic Predisposition to Disease, Germ-Line Mutation, Humans, Breast Neoplasms genetics
- Abstract
Purpose: Studies conducted primarily among European ancestry women reported 12 breast cancer predisposition genes. However, etiologic roles of these genes in breast cancer among African ancestry women have been less well-investigated., Methods: We conducted a case-control study in African American women, which included 1117 breast cancer cases and 2169 cancer-free controls, and a pooled analysis, which included 7096 cases and 8040 controls of African descent. Odds ratios of associations with breast cancer risk were estimated., Results: Using sequence data, we identified 61 pathogenic variants in 12 breast cancer predisposition genes, including 11 pathogenic variants not yet reported in previous studies. Pooled analysis showed statistically significant associations of breast cancer risk with pathogenic variants in BRCA1, BRCA2, PALB2, ATM, CHEK2, TP53, NF1, RAD51C, and RAD51D (all P < .05). The associations with BRCA1, PALB2, and RAD51D were stronger for estrogen receptor (ER)-negative than for ER-positive breast cancer (P heterogeneity < .05), whereas the association with CHEK2 was stronger for ER-positive than for ER-negative breast cancer., Conclusion: Our study confirmed previously identified associations of breast cancer risk with BRCA1, BRCA2, PALB2, ATM, TP53, NF1, and CHEK2 and provided new evidence to extend the associations of breast cancer risk with RAD51C and RAD51D, which was identified previously in European ancestry populations, to African ancestry women., Competing Interests: Conflict of Interest The authors declare no conflicts of interest., (Copyright © 2022 American College of Medical Genetics and Genomics. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
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19. Impact of clinical posting in psychiatry on the attitude towards mental illness in undergraduate final year medical students.
- Author
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Pal T and Singh S
- Subjects
- Attitude of Health Personnel, Career Choice, Female, Humans, Male, Surveys and Questionnaires, Mental Disorders, Psychiatry education, Students, Medical
- Abstract
Introduction: The stigma in psychiatry is pervasive, it is more serious obstacle for treatment initiation. Stigmatization among health professional themselves can result in compromised patient care. The aim of this study is to see the impact of psychiatry clinical posting on the attitude of medical students towards, psychiatry and mental illness., Material and Methods: A total of 30 final year medical students participated to this study. The attitude towards psychiatry (ATP) and the attitude towards mental illness (AMI) questionnaire were administered before and after 15 days clinical posting in psychiatry., Result: Medical students had favorable attitude towards psychiatry and mental illness with in a mean score of 108.34 on ATP and on 68.24AMI. There was a significant increase in the mean score of both scales after the psychiatry clinical posting. AMI and ATP for female and for male (AMI - ATP)., Conclusion: A 15 days clinical posting of final year medical students in psychiatry was associated with an increase in positive attitude towards mental illness and psychiatry among female students but not among male students and posting reduces the stigma among the students also., (Copyright © 2022. Published by Elsevier B.V.)
- Published
- 2022
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20. Diversity in cancer genomics research is a matter of equity and scientific discovery.
- Author
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Pal T
- Subjects
- Humans, Genomics, Neoplasms genetics
- Abstract
Competing Interests: Conflict of Interest The author declares no conflict of interest.
- Published
- 2022
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21. Corrigendum to "Impact of clinical posting in psychiatry on the attitude towards mental illness in undergraduate final year medical students" [Asian J. Psychiatry 69 (2022) 103001].
- Author
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Pal T and Singh S
- Published
- 2022
- Full Text
- View/download PDF
22. Management of individuals with germline variants in PALB2: a clinical practice resource of the American College of Medical Genetics and Genomics (ACMG).
- Author
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Tischkowitz M, Balmaña J, Foulkes WD, James P, Ngeow J, Schmutzler R, Voian N, Wick MJ, Stewart DR, and Pal T
- Subjects
- Fanconi Anemia Complementation Group N Protein genetics, Female, Genetic Predisposition to Disease, Genomics, Germ Cells, Humans, Mastectomy, United States, Breast Neoplasms genetics, Genetics, Medical
- Abstract
Purpose: PALB2 germline pathogenic variants are associated with increased breast cancer risk and smaller increased risk of pancreatic and likely ovarian cancer. Resources for health-care professionals managing PALB2 heterozygotes are currently limited., Methods: A workgroup of experts sought to outline management of PALB2 heterozygotes based on current evidence. Peer-reviewed publications from PubMed were identified to guide recommendations, which arose by consensus and the collective expertise of the authors., Results: PALB2 heterozygotes should be offered BRCA1/2-equivalent breast surveillance. Risk-reducing mastectomy can be considered guided by personalized risk estimates. Pancreatic cancer surveillance should be considered, but ideally as part of a clinical trial. Typically, ovarian cancer surveillance is not recommended, and risk-reducing salpingo-oophorectomy should only rarely be considered before the age of 50. Given the mechanistic similarities, PALB2 heterozygotes should be considered for therapeutic regimens and trials as those for BRCA1/2., Conclusion: This guidance is similar to those for BRCA1/2. While the range of the cancer risk estimates overlap with BRCA1/2, point estimates are lower in PALB2 so individualized estimates are important for management decisions. Systematic prospective data collection is needed to determine as yet unanswered questions such as the risk of contralateral breast cancer and survival after cancer diagnosis., (© 2021. The Author(s), under exclusive licence to the American College of Medical Genetics and Genomics.)
- Published
- 2021
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23. A review on current advances in machine learning based diabetes prediction.
- Author
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Jaiswal V, Negi A, and Pal T
- Subjects
- Algorithms, Bayes Theorem, Data Mining, Humans, Diabetes Mellitus diagnosis, Diabetes Mellitus epidemiology, Diabetes Mellitus therapy, Machine Learning
- Abstract
Diabetes is a metabolic disorder comprising of high glucose level in blood over a prolonged period in the body as it is not capable of using it properly. The severe complications associated with diabetes include diabetic ketoacidosis, nonketotic hypersmolar coma, cardiovascular disease, stroke, chronic renal failure, retinal damage and foot ulcers. There is a huge increase in the number of patients with diabetes globally and it is considered a major health problem worldwide. Early diagnosis of diabetes is helpful for treatment and reduces the chance of severe complications associated with it. Machine learning algorithms (such as ANN, SVM, Naive Bayes, PLS-DA and deep learning) and data mining techniques are used for detecting interesting patterns for diagnosing and treatment of disease. Current computational methods for diabetes diagnosis have some limitations and are not tested on different datasets or peoples from different countries which limits the practical use of prediction methods. This paper is an effort to summarize the majority of the literature concerned with machine learning and data mining techniques applied for the prediction of diabetes and associated challenges. This report would be helpful for better prediction of disease and improve in understanding the pattern of diabetes. Consequently, the report would be helpful for treatment and reduce risk of other complications of diabetes., (Copyright © 2021 Primary Care Diabetes Europe. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2021
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24. Sharing genetic test results with family members of BRCA, PALB2, CHEK2, and ATM carriers.
- Author
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Dean M, Tezak AL, Johnson S, Pierce JK, Weidner A, Clouse K, Pal T, and Cragun D
- Subjects
- Ataxia Telangiectasia Mutated Proteins genetics, Checkpoint Kinase 2 genetics, Family, Fanconi Anemia Complementation Group N Protein genetics, Female, Genetic Testing, Humans, Breast Neoplasms genetics, Genetic Predisposition to Disease
- Abstract
Objective: This study explored motivators and challenges/barriers to sharing personal genetic test results (GTR) with family members (FM)., Methods: Semi-structured, in-depth interviews were conducted with 62 women who had a pathogenic or likely pathogenic (P/LP) variant in aBRCA, PALB2, CHEK2, or ATM gene. Selective qualitative data analysis focused on eliciting motivators and challenges/barriers identified by participants when sharing their GTR with FM., Results: Motivators to sharing personal GTR with FM included: health protection and prevention; moral obligation; decisional empowerment; familial ties; written resources; and contextualization for a familial cause for cancer. Challenges/barriers to family sharing included: concern for FM reactions; complexities of information; lack of closeness; perceived relevance; and emotional impact., Conclusions: All motivators and challenges/barriers were identified across BRCA and non-BRCA carriers, demonstrating commonalities in family sharing of GTR among high- to moderate-penetrance hereditary BC (breast cancer) genes. Despite challenges/barriers, participants disclosed their GTR with most close FM, yet restrictions in communication and/or strain on the timing, manner of disclosing, and strategies used varied across certain FM., Practice Implications: These findings offer healthcare providers and researchers preliminary practical implications for broadly improving family sharing interventions across P/LP variants in BC risk genes by demonstrating important elements to include in family sharing letters., Competing Interests: Declaration of Competing Interest The authors report no declarations of interest., (Copyright © 2021 Elsevier B.V. All rights reserved.)
- Published
- 2021
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25. Disparities in BRCA counseling across providers in a diverse population of young breast cancer survivors.
- Author
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Reid S, Cragun D, Tezak A, Weidner A, Moore J, Mayer IA, Shu XO, Ye F, Fan R, Vadaparampil S, and Pal T
- Subjects
- Counseling, Female, Florida epidemiology, Genetic Counseling, Genetic Testing, Humans, Middle Aged, Survivors, Breast Neoplasms diagnosis, Breast Neoplasms genetics, Cancer Survivors
- Abstract
Purpose: All women diagnosed with breast cancer (BC) ≤age 50 should be referred for genetic counseling (GC) and testing. We sought to compare differences in provider practices and access across a racially and ethnically diverse population of young BC survivors., Methods: A registry-based sample of women diagnosed with invasive BC ≤age 50 from 2009 to 2012 was recruited through the Florida Cancer Registry, and completed a questionnaire and medical record release. Differences were compared across those tested with or without the involvement of a board-certified or credentialed genetics health professional (GHP) in (1) clinical and demographic variables and (2) pretest GC elements., Results: Of 1622 participants, there were 440 Blacks, 285 Hispanics, and 897 Non-Hispanic Whites. Of 831 participants with medical record verification of testing provider, 170 (20%) had documentation of GHP involvement. Among the 613 who recalled a pretest discussion and had GC elements collected, those with GHP involvement were significantly more likely to recall the seven recognized GC elements., Conclusion: GHP involvement was associated with adherence to nationally recommended best practices. With the expanding importance of identifying inherited cancers, it is critical to ensure equitable access to best practices across all populations.
- Published
- 2020
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26. Molecular characterization of clinical and environmental carbapenem resistant Acinetobacter baumannii isolates in a hospital of the Eastern Region of Saudi Arabia.
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Al-Hamad A, Pal T, Leskafi H, Abbas H, Hejles H, Alsubikhy F, Darwish D, Ghazawi A, and Sonnevend A
- Subjects
- Acinetobacter Infections epidemiology, Acinetobacter Infections microbiology, Acinetobacter baumannii genetics, Acinetobacter baumannii isolation & purification, Carbapenems therapeutic use, Cross Infection drug therapy, Cross Infection epidemiology, Female, Genes, Bacterial genetics, Humans, Male, Phylogeny, Saudi Arabia epidemiology, beta-Lactam Resistance genetics, Acinetobacter Infections drug therapy, Acinetobacter baumannii drug effects, Carbapenems pharmacology, Cross Infection microbiology
- Abstract
Background: Environmental and clinical carbapenem-resistant Acinetobacter baumannii (CRAb) isolated in a hospital of the Eastern Region of Saudi Arabia were compared to assess the potential environmental contamination by this pathogen., Methods: Frequent-hand-touch surfaces of intensive care (ICU), medical (MW), and surgical (SW) units were randomly sampled for a month-long period, and the CRAb identified were compared to clinical isolates of the same period by PFGE and bla
OXA-51-like gene sequencing. Carbapenemase and ribosomal methylase genes, ISAba1 link to blaOXA51-like or to blaOXA-23 , respectively were detected by PCR., Results: CRAb was identified from 35.5% of surfaces. All environmental and clinical isolates were multi- or extremely drug resistant. PFGE of all clinical (n=21) and selected environmental (n=30) isolates identified a singleton and four clusters, all of which included both clinical and environmental isolates. In the two largest clusters isolates carried blaOXA-66 , ISAba1-linked blaOXA-23 , and were from the ICU, MW and the male SW. Isolates of the female SW carried blaOXA-69 , ISAba1-linked blaOXA-23 and blaGES-11 . A pair of clinical and environmental CRAb from the Male SW harboured blaNDM-1 in addition to ISAba1-linked blaOXA-94 ., Conclusion: A worrying level of environmental contamination, often by CRAb belonging to international clones, was revealed, highlighting the importance of environmental hygiene., (Copyright © 2019 The Author(s). Published by Elsevier Ltd.. All rights reserved.)- Published
- 2020
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27. Points to consider: is there evidence to support BRCA1/2 and other inherited breast cancer genetic testing for all breast cancer patients? A statement of the American College of Medical Genetics and Genomics (ACMG).
- Author
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Pal T, Agnese D, Daly M, La Spada A, Litton J, Wick M, Klugman S, Esplin ED, and Jarvik GP
- Subjects
- BRCA1 Protein genetics, BRCA2 Protein genetics, Genetic Predisposition to Disease, Genetic Testing, Genomics, Humans, United States, Breast Neoplasms diagnosis, Breast Neoplasms genetics, Genetics, Medical
- Published
- 2020
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28. Fluorescence enhancement via varied long-chain thiol stabilized gold nanoparticles: A study of far-field effect.
- Author
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Jana J, Aditya T, Ganguly M, Mehetor SK, and Pal T
- Abstract
Metal enhanced fluorescence of carbon dots has been reported in aqueous solution. Moderately fluorescing carbon dots (λ
ex =360nm and λem =440nm) of 6-8nm diameters (CDA) have been synthesized from freshly prepared aqueous ascorbic acid solution under modified hydrothermal treatment. The CDA fluorescence is quenched at the close proximity with gold nanoparticles (AuNPs). Here, a substrate specific near-field electric field distribution is pronounced. Anticipating distance dependent fluorescence enhancement phenomenon, long-chain aliphatic thiol capped AuNPs are introduced to improve fluorescence of moderately fluorescing CDAs. The long-chain aliphatic thiols act as spacers between CDA and AuNP. Interestingly, the fluorescence of CDA is observed to be enhanced successively as the chain lengths of aliphatic thiols are increased. Fluorescing CDA, upon excitation, transfers energy to the nearby AuNP and a plasmon is induced. This plasmon radiates in the far-field resulting in fluorescence enhancement of CDAs. Such an interesting enhancement in emission with metallic gold is termed as gold enhanced fluorescence. This far-field effect for fluorescence enhancement of CDA particles becomes a general consensus in solution with varied long-chain aliphatic amine ligand capped silver nanoparticles (AgNPs). Finally, consequence of far-field effect of fluorescence enhancement has been observed while derivatized AuNP and AgNP are introduced into the CDA solution simultaneously which is described as reinforced fluorescence enhancement due to coupled plasmonic radiation., (Copyright © 2017 Elsevier B.V. All rights reserved.)- Published
- 2018
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29. Directional growth of Ag nanorod from polymeric silver cyanide: A potential substrate for concentration dependent SERS signal enhancement leading to melamine detection.
- Author
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Roy A, Sahoo R, Chowdhury J, Bhattacharya TS, Agarwal R, and Pal T
- Abstract
Attention has been directed to prepare exclusive one-dimensional silver nanostructure from the linear inorganic polymer AgCN. Successive color change from yellow to orange, to red and finally to green reflects the evolution of high yielding Ag nanorods (NRs) from well-known -[Ag-CN]- chains of polymeric AgCN at room temperature. The parental 1D morphology of AgCN is retained within the as-synthesized Ag NRs. So we could successfully exploit the Ag NR for surface-enhanced Raman scattering (SERS) studies for sensing a popular milk adulterant melamine down to picomolar level. We observed interesting concentration dependent selective SERS band enhancement of melamine. The enhanced ~1327cm
-1 SERS signal intensity at lower concentration (10-9 and 10-12 M) of melamine speaks for the preferential participation of -C-N of melamine molecule with Ag surface. On the other hand, '-NH2 ' group together with ring 'N' participation of melamine molecule onto Ag surface suggested an adsorptive stance at higher (10-3 -10-7 M) concentration range. Thus the binding modes of the molecule at the Ag surface justify its fluxional behavior., (Copyright © 2017 Elsevier B.V. All rights reserved.)- Published
- 2017
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30. Tracking the dissemination of a culturally targeted brochure to promote awareness of hereditary breast and ovarian cancer among Black women.
- Author
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Scherr CL, Bomboka L, Nelson A, Pal T, and Vadaparampil ST
- Subjects
- Adult, Awareness, Black People genetics, Breast Neoplasms ethnology, Diffusion of Innovation, Feedback, Female, Genetic Counseling, Genetic Predisposition to Disease, Humans, Middle Aged, Ovarian Neoplasms ethnology, Program Evaluation, Black People education, Breast Neoplasms genetics, Health Knowledge, Attitudes, Practice, Ovarian Neoplasms genetics, Pamphlets
- Abstract
Objective: Black women have a higher rate of BRCA1 and BRCA2 (BRCA) mutations, compared with other populations, that increases their risk for hereditary breast and ovarian cancer (HBOC). However, Black women are less likely to know about HBOC and genetic testing. Based on a request from a community advisory panel of breast cancer survivors, community leaders and healthcare providers in the Black community, our team developed a culturally targeted educational brochure to promote awareness of HBOC among Black women., Methods: To reach the target population we utilized a passive dissemination strategy. Using Diffusion of Innovations (DOI) as a framework, we traced dissemination of the brochure over a five year period using self-addressed postcards contained inside the brochure that included several open-ended questions about the utility of the brochure, and a field for written comments. Closed-ended responses were analyzed using descriptive statistics and thematic analysis was conducted on the open-ended responses., Results: DOI captured the proliferation of the brochure among Black women across the US., Practice Implications: The use of passive dissemination strategies among pre-existing social networks proved to be a useful and sustainable method for increasing knowledge of HBOC among Black women., (Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.)
- Published
- 2017
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31. A pH dependent Raman and surface enhanced Raman spectroscopic studies of citrazinic acid aided by theoretical calculations.
- Author
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Sarkar S, Chowdhury J, Dutta S, and Pal T
- Abstract
A pH dependent normal Raman scattering (NRS) and surface enhanced Raman scattering (SERS) spectral patterns of citrazinic acid (CZA), a biologically important molecule, have been investigated. The acid, with different pKa values (~4 and ~11) for the two different functional groups (-COOH and -OH groups), shows interesting range of color changes (yellow at pH~14 and brown at pH~2) with the variation in solution pH. Thus, depending upon the pH of the medium, CZA molecule can exist in various protonated and/or deprotonated forms. Here we have prescribed the existence different possible forms of CZA at different pH (Forms "C", "H" and "Dprot" at pH~14 and Forms "A", "D", and "P" at pH~2 respectively). The NRS spectra of these solutions and their respective SERS spectra over gold nanoparticles were recorded. The spectra clearly differ in their spectral profiles. For example the SERS spectra recorded with the CZA solution at pH~2 shows blue shift for different bands compared to its NRS window e.g. 406 to 450cm(-1), 616 to 632cm(-1), 1332 to 1343cm(-1) etc. Again, the most enhanced peak at ~1548cm(-1) in NRS while in the SERS window this appears at ~1580cm(-1). Similar observation was also made for CZA at pH~14. For example, the 423cm(-1) band in the NRS profile experience a blue shift and appears at ~447cm(-1) in the SERS spectrum as well as other bands at ~850, ~1067 and ~1214cm(-1) in the SERS window are markedly enhanced. It is also worth noting that the SERS spectra at the different pH also differ from each other. These spectral differences indicate the existence of various adsorptive forms of the CZA molecule depending upon the pH of the solution. Therefore based on the experimental findings we propose different possible molecular forms of CZA at different pH (acidic and alkaline) conditions. For example forms 'A', 'D' and 'P' existing in acidic pH (pH~2) and three other deprotonated forms 'C', 'H' and 'Dprot' in alkaline pH (pH~14). The DFT calculations for these prescribed model systems were also carried out to have a plausible understanding of their equilibrium geometries and the vibrational wavenumbers. An idea about the molecular orientation of the adsorbate over nanocolloidal gold substrate is also documented., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2016
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32. DRPPP: A machine learning based tool for prediction of disease resistance proteins in plants.
- Author
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Pal T, Jaiswal V, and Chauhan RS
- Subjects
- Models, Statistical, Computational Biology methods, Disease Resistance genetics, Plant Proteins genetics, Plants genetics, Support Vector Machine
- Abstract
Plant disease outbreak is increasing rapidly around the globe and is a major cause for crop loss worldwide. Plants, in turn, have developed diverse defense mechanisms to identify and evade different pathogenic microorganisms. Early identification of plant disease resistance genes (R genes) can be exploited for crop improvement programs. The present prediction methods are either based on sequence similarity/domain-based methods or electronically annotated sequences, which might miss existing unrecognized proteins or low similarity proteins. Therefore, there is an urgent need to devise a novel machine learning technique to address this problem. In the current study, a SVM-based tool was developed for prediction of disease resistance proteins in plants. All known disease resistance (R) proteins (112) were taken as a positive set, whereas manually curated negative dataset consisted of 119 non-R proteins. Feature extraction generated 10,270 features using 16 different methods. The ten-fold cross validation was performed to optimize SVM parameters using radial basis function. The model was derived using libSVM and achieved an overall accuracy of 91.11% on the test dataset. The tool was found to be robust and can be used for high-throughput datasets. The current study provides instant identification of R proteins using machine learning approach, in addition to the similarity or domain prediction methods., (Copyright © 2016 Elsevier Ltd. All rights reserved.)
- Published
- 2016
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33. Plasmid-mediated colistin resistance in Escherichia coli from the Arabian Peninsula.
- Author
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Sonnevend Á, Ghazawi A, Alqahtani M, Shibl A, Jamal W, Hashmey R, and Pal T
- Subjects
- Escherichia coli genetics, Escherichia coli isolation & purification, Escherichia coli Infections drug therapy, Humans, Kuwait, Oman, Plasmids metabolism, Saudi Arabia, United Arab Emirates, beta-Lactamases genetics, beta-Lactamases metabolism, Anti-Bacterial Agents pharmacology, Colistin pharmacology, Drug Resistance, Bacterial genetics, Escherichia coli drug effects, Escherichia coli Infections microbiology, Plasmids genetics
- Abstract
Objectives: Searching for the presence of the mcr-1 gene in colistin resistant Enterobacteriaceae in countries of the Arabian Peninsula., Methods: Seventy-five independent, colistin resistant Enterobacteriaceae strains isolated from clinical cases in Bahrain, Kuwait, Oman, Saudi Arabia and the United Arab Emirates were tested by PCR for the mcr-1 gene. mcr-1 positive strains were genotyped, and their antibiotic susceptibility was established. The mcr-1 containing plasmids were mobilized into Escherichia coli K-12 and their sequence was determined., Results: Four E. coli isolates (two from Bahrain, one from Saudi Arabia and one from the United Arab Emirates) were identified carrying the mcr-1 gene on conjugative plasmids. They belonged to global multidrug resistant E. coli clones, i.e. ST648, ST224, ST68 and ST131, respectively. One strain carried the blaNDM-1 carbapenemase gene. Three strains carried mcr-1 on IncI2 type plasmids, one of them also harboring a blaCTX-M-64 gene. In the fourth strain mcr-1 was located on a 240kb IncHI2 plasmid co-harboring 13 other resistance genes., Conclusions: This is the first report on the presence of the plasmid-coded mcr-1 gene in a variety of multi-resistant clinical isolates from the Arabian Peninsula indicating that several commonly used antibiotics can potentially facilitate the spread of mcr-1 carrying strains, or directly, mcr-1 containing plasmids., (Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2016
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34. One pot synthesis of intriguing fluorescent carbon dots for sensing and live cell imaging.
- Author
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Jana J, Ganguly M, Das B, Dhara S, Negishi Y, and Pal T
- Subjects
- Acetone analysis, Acetone chemistry, Animals, Cell Line, Cell Proliferation drug effects, Cell Survival, Chemistry Techniques, Synthetic, Dimethyl Sulfoxide chemistry, Fluorescent Dyes toxicity, Limit of Detection, Mice, Solvents chemistry, Spectrometry, Fluorescence, Water chemistry, Carbon chemistry, Fluorescent Dyes chemical synthesis, Fluorescent Dyes chemistry, Molecular Imaging methods, Nanoparticles chemistry
- Abstract
We report a simple one-pot synthesis of highly fluorescent carbon dots (CDs) via modified hydrothermal (MHT) treatment of alkaline solution of dopamine and cysteine. These CDs (λex=320 nm, λem=390 nm, and quantum yield ∼ 5.1%) are of ∼ 2-3 nm in diameter. Further attempt of synthesizing CDs in some common water-miscible solvents ends up the fact that the MHT product from acetone medium is nonfluorescent. However, CDs, produced in aqueous medium, are so stable that they can be dried as a deliverable solid (WCD) without any alteration of fluorescing property if reversibly dispersed in water. Fluorescence of WCD is quenched selectively in acetone. Quenching occurs presumably due to the disruption of radiative recombination along with the hindrance in quantum confinement of the emissive energy traps to the particle surface. Successive quenching of fluorescence of WCD in different acetone concentration admixed in water paves the way to selective acetone sensing (LOD=8.75 × 10(-7) M). The synthesized CDs (in aqueous medium) are cytocompatible and are efficient fluorescent probe for cell imaging. Only living cells are recognized exclusively from fluorescence imaging leaving aside dead cells, while cells are treated with CDs., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2016
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35. Differences in BRCA counseling and testing practices based on ordering provider type.
- Author
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Cragun D, Camperlengo L, Robinson E, Caldwell M, Kim J, Phelan C, Monteiro AN, Vadaparampil ST, Sellers TA, and Pal T
- Subjects
- Adult, Cross-Sectional Studies, Female, Genetic Predisposition to Disease, Humans, Male, Middle Aged, Public Health Surveillance, Registries, Risk Assessment, Risk Factors, Surveys and Questionnaires, Genes, BRCA1, Genes, BRCA2, Genetic Counseling, Genetic Testing, Health Personnel standards
- Abstract
Purpose: The purpose of this study was to assess potential differences in genetic counseling services delivered by board-certified genetic health-care providers versus non-genetic health-care providers. We evaluated (i) patient recall and content of pretest genetic counseling for hereditary breast and ovarian cancer and (ii) whether full BRCA1 and 2 gene sequencing was performed when less expensive single-site or Ashkenazi Jewish founder mutation testing may have been sufficient., Methods: Participants completed a questionnaire and provided BRCA test reports that included testing provider and type of test. Chi-square tests and logistic regression were used for analysis., Results: Of 473 participants, >90% were white, female, and BRCA mutation carriers. Of the 276 (58%) with genetic health-care provider involvement, 97% recalled a pretest discussion as compared with 59% of those without genetic health-care provider involvement (P < 0.001). Among the subgroup who recalled a pretest discussion (n = 385), those with genetic health-care provider involvement indicated higher adherence to eight recognized genetic counseling elements, four of which were statistically significant. Furthermore, involvement of a genetic health-care provider halved the likelihood that comprehensive BRCA testing was ordered among the 266 for whom single-site or multisite-3 testing may have been sufficient (P = 0.02)., Conclusion: Our results suggest that genetic health-care provider involvement is associated with adherence to nationally recommended genetic counseling practices and could potentially reduce costs of BRCA genetic testing.
- Published
- 2015
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36. Comparing universal Lynch syndrome tumor-screening programs to evaluate associations between implementation strategies and patient follow-through.
- Author
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Cragun D, DeBate RD, Vadaparampil ST, Baldwin J, Hampel H, and Pal T
- Subjects
- Colorectal Neoplasms genetics, Colorectal Neoplasms, Hereditary Nonpolyposis genetics, Early Detection of Cancer methods, Early Detection of Cancer statistics & numerical data, Follow-Up Studies, Genetic Counseling methods, Genetic Counseling statistics & numerical data, Genetic Testing statistics & numerical data, Germ-Line Mutation, Health Surveys statistics & numerical data, Humans, Reproducibility of Results, Sensitivity and Specificity, Colorectal Neoplasms diagnosis, Colorectal Neoplasms, Hereditary Nonpolyposis diagnosis, Genetic Testing methods, Health Surveys methods
- Abstract
Purpose: Universal tumor screening (UTS) for all colorectal cancer patients can improve the identification of Lynch syndrome, the most common cause of hereditary colorectal cancer. This multiple-case study explored how variability in UTS procedures influenced patient follow-through (PF) with germ-line testing after a screen-positive result., Methods: Data were obtained through Web-based surveys and telephone interviews with institutional informants. Institutions were categorized as Low-PF (≤10% underwent germ-line testing), Medium-PF (11-40%), or High-PF (>40%). To identify implementation procedures (i.e., conditions) unique to High-PF institutions, qualitative comparative analysis was performed., Results: Twenty-one informants from 15 institutions completed surveys and/or interviews. Conditions present among all five High-PF institutions included the following: (i) disclosure of screen-positive results to patients by genetic counselors; and (ii) genetic counselors either facilitate physician referrals to genetics professionals or eliminate the need for referrals. Although both of these High-PF conditions were present among two Medium-PF institutions, automatic reflex testing was lacking and difficulty contacting screen-positive patients was a barrier. The three remaining Medium-PF and five Low-PF institutions lacked the conditions found in High-PF institutions., Conclusion: METHODS for streamlining UTS procedures, incorporating a high level of involvement of genetic counselors in tracking and communication of results and in reducing barriers to patient contact, are reviewed within a broader discussion on maximizing the effectiveness and public health impact of UTS.
- Published
- 2014
- Full Text
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37. High-risk consumers' perceptions of preimplantation genetic diagnosis for hereditary cancers: a systematic review and meta-analysis.
- Author
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Quinn GP, Pal T, Murphy D, Vadaparampil ST, and Kumar A
- Subjects
- Adenomatous Polyposis Coli diagnosis, Adenomatous Polyposis Coli genetics, Adenomatous Polyposis Coli prevention & control, Breast Neoplasms diagnosis, Breast Neoplasms genetics, Breast Neoplasms prevention & control, Consumer Health Information, Data Interpretation, Statistical, Female, Humans, Mutation, Neoplastic Syndromes, Hereditary genetics, Neoplastic Syndromes, Hereditary prevention & control, Ovarian Neoplasms diagnosis, Ovarian Neoplasms genetics, Ovarian Neoplasms prevention & control, Risk Factors, Genetic Predisposition to Disease genetics, Health Knowledge, Attitudes, Practice, Neoplastic Syndromes, Hereditary diagnosis, Preimplantation Diagnosis
- Abstract
Individuals carrying deleterious germline mutations placing them at increased risk for hereditary cancer syndromes (high-risk consumers) often have a great deal of fear and concern over transmitting mutations to their offspring, particularly conditions which are autosomal dominant. Preimplantation genetic diagnosis (PGD) is a procedure that can detect certain germline cancer predisposing mutations present in embryos. The objective of this review was to assess high-risk consumers' knowledge and perceptions of PGD for hereditary cancers. A systematic literature review was conducted through PubMed, Wiley Interscience, PsychInfo, and Cochrane Library databases to identify all articles assessing consumer knowledge and attitudes of PGD for hereditary cancer syndromes. We assessed heterogeneity and the robustness of findings through additional analyses according to study location, hereditary cancer type, and sample size. Thirteen articles remained eligible after the application of specific criteria. Results show a general low level of knowledge about PGD for hereditary cancers, moderate rates of acceptability among high-risk groups, and high levels of need for information about PGD. Individuals in specific risk groups such as those with a personal or family history of hereditary breast and ovarian cancer (HBOC) syndrome or familial adenomatous polyposis (FAP) may benefit from educational information from healthcare professionals about the use of PGD.
- Published
- 2012
- Full Text
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38. Prognostic significance of miR-215 in colon cancer.
- Author
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Karaayvaz M, Pal T, Song B, Zhang C, Georgakopoulos P, Mehmood S, Burke S, Shroyer K, and Ju J
- Subjects
- Adenocarcinoma metabolism, Adenocarcinoma mortality, Adult, Aged, Aged, 80 and over, Colonic Neoplasms metabolism, Colonic Neoplasms mortality, Female, Humans, Immunoenzyme Techniques, Male, Middle Aged, Neoplasm Staging, Nuclear Proteins genetics, Prognosis, RNA, Messenger genetics, Real-Time Polymerase Chain Reaction, Survival Rate, Tetrahydrofolate Dehydrogenase metabolism, Thymidylate Synthase metabolism, Tissue Array Analysis, Ubiquitin-Protein Ligases genetics, Adenocarcinoma genetics, Colon metabolism, Colonic Neoplasms genetics, MicroRNAs genetics, Nuclear Proteins metabolism, Ubiquitin-Protein Ligases metabolism
- Abstract
Background: We have previously shown that miR-215 suppressed the expression of key targets such as thymidylate synthase (TS), dihydrofolate reductase, and denticleless protein homolog (DTL) in colon cancer. miR-215 is a tumor suppressor candidate due to the upregulation of p53 and p21 by targeting DTL. However, high levels of miR-215 conferred chemoresistance due to cell cycle arrest and reduced cell proliferation by suppressing DTL. In this study, the clinical significance of miR-215 was further investigated as a potential prognostic biomarker in colon cancer patients., Methods: Total RNAs were extracted from 34 paired normal and colon (stage II and III) tumor specimens using the Trizol-based approach. The levels of miR-215 and a closely related miR-192 were quantified using quantitative real-time polymerase chain reaction (qRT-PCR) expression analysis. The expression of DTL mRNA and protein were quantified by real time qRT-PCR and immunohistochemistry., Results: The expression levels of miR-192 (P = .0008) and miR-215 (P < .0001) were significantly decreased in colon tumors compared with normal tissues. DTL was significantly over-expressed and was inversely correlated with miR-215, further suggesting an in vivo physiologic relevance of miR-215 mediated DTL suppression. Kaplan-Meier survival analysis by Cox regression revealed that high levels of miR-215 expression (hazard ratio, 3.516; 95% confidence interval, 1.007-12.28, P = .025) are closely associated with poor patient's overall survival. Furthermore, an elevated expression of a miR-215 target protein DTL was detected in colon cancer tissues whereas no expression was present in normal tissues., Conclusion: miR-215 has a unique potential as a prognostic biomarker in stage II and III colon cancer., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
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39. Solvent effect on the optical property of uranyl acetylacetonate monohydrate.
- Author
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Pradhan M, Basu M, Sarkar S, Sinha AK, and Pal T
- Subjects
- Absorption, Alcohols chemistry, Ligands, Models, Chemical, Spectrophotometry, Ultraviolet, Thermodynamics, Torsion, Mechanical, Hydroxybutyrates chemistry, Optical Phenomena, Pentanones chemistry, Solvents chemistry, Uranium Compounds chemistry
- Abstract
The lability of the [UO2(acac)2H2O] complex has been exploited to decipher solvent composition of a medium. Successive blue shift of the π-π* band (λmax=282 nm) is observed due to alcohol substitution of increasing chain length in place of water. This observation helps to quantify the chain lengths of normal alcohol. The result has been accounted theoretically. However, in non-coordinating solvent, irregular red shift of the π-π* band is observed because of the molecular complexity. Again, charge transfer (CT) band at 211 nm has been identified employing polar-polar and polar coordinating-non-coordinating solvent systems., (Copyright © 2010 Elsevier B.V. All rights reserved.)
- Published
- 2011
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40. Convulsant activity and pharmacokinetic-pharmacodynamic modeling of the electroencephalogram effect of gemifloxacin in rats.
- Author
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Roy B, Bose A, Bhaumik U, Das A, Chatterjee N, Ghosh A, Darbar S, Sarkar AK, Sengupta P, and Pal TK
- Subjects
- Animals, Dose-Response Relationship, Drug, Gemifloxacin, Male, Models, Statistical, Rats, Rats, Wistar, Time Factors, Tremor chemically induced, Anti-Bacterial Agents adverse effects, Anti-Bacterial Agents pharmacokinetics, Electroencephalography drug effects, Fluoroquinolones adverse effects, Fluoroquinolones pharmacokinetics, Naphthyridines adverse effects, Naphthyridines pharmacokinetics, Seizures chemically induced
- Abstract
A pharmacokinetic-pharmacodynamic (PK-PD) modeling approach was used to investigate the epileptogenic activity of gemifloxacin as a representative antibiotic with concentration-dependent antimicrobial activity. Rats received an intravenous infusion of gemifloxacin at a rate of 4 mg kg of body weight(-1) min(-1) over 50 min. Blood samples were collected for drug assay, and an electroencephalogram (EEG) was recorded during infusion and postinfusion. An important delay was observed between concentrations of gemifloxacin in plasma and the EEG effect; this effect was accompanied by tremors and partial seizures. Indirect effect models failed to describe these data, which were successfully fitted by using an effect compartment model with a spline function to describe the relationship between effect and concentration at the effect site. The robustness of the PK-PD model was then assessed by keeping the dose constant but increasing the duration of infusion to 100 and 200 min. Although this was accompanied by PK modifications, PD parameters did not vary significantly, and the PK-PD model still applied. In conclusion, the successful PK-PD modeling of the gemifloxacin EEG effect in rats should be considered to predict and reduce the epileptogenic risk associated with this antibiotic as a representative fluoroquinolone., (2009 Wiley-Liss, Inc. and the American Pharmacists Association)
- Published
- 2010
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41. Comparative in vitro activity of tigecycline and other antimicrobial agents against Shigella species from Kuwait and the United Arab of Emirates.
- Author
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Jamal W, Rotimi VO, Pal T, Sonnevend A, and Dimitrov TS
- Subjects
- Drug Resistance, Multiple, Bacterial, Dysentery, Bacillary diagnosis, Dysentery, Bacillary epidemiology, Humans, Kuwait epidemiology, Microbial Sensitivity Tests, Minocycline therapeutic use, Prevalence, Shigella classification, Shigella genetics, Shigella isolation & purification, Tigecycline, United Arab Emirates epidemiology, beta-Lactamases biosynthesis, Anti-Bacterial Agents therapeutic use, Dysentery, Bacillary drug therapy, Dysentery, Bacillary microbiology, Minocycline analogs & derivatives, Shigella drug effects
- Abstract
Shigella species isolated from stool samples of symptomatic patients of all age groups at the Mubarak Al Kabir Hospital and Infectious Diseases Hospital, Kuwait and Tawam Hospital, UAE during a 2-year period were investigated for their susceptibility to tigecycline and several other antibiotics by determining the minimum inhibitory concentrations (MICs) using the E test method. A total of 100 and 42 strains were collected from UAE and Kuwait, respectively. The extent of drug resistance in the Shigella spp. isolates from these two countries was analyzed by criteria recommended by the Clinical and Laboratory Standards Institute (CLSI). Amikacin, cefotaxime, cefuroxime, ciprofloxacin, imipenem, meropenem, piperacillin-tazobactam and tigecycline had excellent activities against all isolates from UAE and Kuwait with MIC(90s) of 12, 0.094, 4, 0.012, 0.25, 0.032, 3 and 0.25 microg/ml and 4, 1, 4, 0.125, 0.38, 0.19, 3 and 0.25 microg/ml, respectively. Half of all isolates from both countries were resistant to ampicillin. None of the isolates in Kuwait was resistant to amoxicillin-clavulanic acid compared with 22% in UAE. Resistance to chloramphenicol was recorded in 50 and 36% of the isolates in Kuwait and UAE, respectively. The percentages of non-susceptibility to trimethoprim-sulfamethoxazole and tetracycline were very high in Kuwait and UAE (76% vs. 92% and 76% vs. 98%, respectively). Notably, one isolate, S. flexneri, from UAE had reduced susceptibility to ciprofloxacin (MIC, 0.25 microg/ml). Four (2.8%) of the isolates were ESBL producers by the E test ESBL method but could not be confirmed by PCR using primers for bla(CTX-M), bla(SHV) and bla(TEM). In conclusion, Shigella spp. isolated from symptomatic patients in Kuwait and the UAE demonstrated high rates of resistance to the first-line antibiotics but very susceptible to the carbapenems, cephalosporins, fluoroquinolones and tigecycline. Tigecycline holds promise as a potential drug of choice for the therapy of severe shigellosis., (Copyright (c) 2009 King Saud Bin Abdulaziz University for Health Sciences. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2010
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42. Arsenic removal from real-life groundwater by adsorption on laterite soil.
- Author
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Maji SK, Pal A, and Pal T
- Subjects
- Adsorption, Arsenic chemistry, Equipment Design, Industrial Waste, Kinetics, Regression Analysis, Sodium Hydroxide chemistry, Soil, Time Factors, Water, Water Pollutants, Chemical, Water Pollution, Chemical analysis, Arsenic analysis, Arsenic toxicity, Water Purification methods
- Abstract
The adsorption characteristics of arsenic on laterite soil, a low-cost natural adsorbent, were studied in the laboratory scale using real-life sample. The studies were conducted by both batch and continuous mode. Laterite soil was found to be an efficient adsorbent for arsenic removal from the groundwater collected from arsenic affected area. The initial concentration of arsenic in the sample was 0.33 ppm. Under optimized conditions the laterite soil could remove up to 98% of total arsenic. The optimum adsorbent dose was 20 g/l and the equilibrium time was 30 min. Isotherm studies showed that the process is favorable and spontaneous. The kinetics showed that the removal of arsenic by laterite soil is a pseudo-second-order reaction. In the column study the flow rate was maintained at 1.49 m3/(m2 h). Using 10 cm column depth, the breakthrough and exhaust time found were 6.75 h and 19.0 h, respectively. Height of adsorption zone was 9.85 cm, the rate at which the adsorption zone was moving through the bed was 0.80 cm/h, and the percentage of the total column saturated at breakthrough was 47.12%. The value of adsorption rate coefficient (K) and the adsorption capacity coefficient (N) were 1.21 l/(mgh) and 69.22 mg/l, respectively. Aqueous NaOH (1 M) could regenerate the adsorbent, and the regenerated adsorbent showed higher efficiency.
- Published
- 2008
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43. Determination of duloxetine in human plasma by liquid chromatography with atmospheric pressure ionization-tandem mass spectrometry and its application to pharmacokinetic study.
- Author
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Senthamil Selvan P, Gowda KV, Mandal U, Sam Solomon WD, and Pal TK
- Subjects
- Duloxetine Hydrochloride, Humans, Reproducibility of Results, Selective Serotonin Reuptake Inhibitors blood, Selective Serotonin Reuptake Inhibitors pharmacokinetics, Thiophenes pharmacokinetics, Chromatography, Liquid methods, Tandem Mass Spectrometry methods, Thiophenes blood
- Abstract
A rapid, sensitive and accurate liquid chromatographic-tandem mass spectrometry (LC-MS-MS) method is described for the determination of duloxetine in human plasma. Duloxetine was extracted from plasma using methanol and separated on a C18 column. The mobile phase consisting of a mixture of acetonitrile and 5mM ammonium acetate (45:55, v/v, pH 3.5) was delivered at a flow rate of 0.3 ml/min. Atmospheric pressure ionization (API) source was operated in positive ion mode. Multiple reaction monitoring (MRM) mode using the transitions of m/z 298.1-->m/z 44.0 and m/z 376.2-->m/z 123.2 were used to quantify duloxetine and internal standard (I.S.), respectively. The linearity was obtained over the concentration range of 0.1-50.0 ng/ml and the lower limit of quantitation (LLOQ) was 0.1 ng/ml. This method was successfully applied to pharmacokinetic study of a duloxetine formulation product after oral administration to healthy human subjects.
- Published
- 2007
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44. Simultaneous determination of fixed dose combination of nebivolol and valsartan in human plasma by liquid chromatographic-tandem mass spectrometry and its application to pharmacokinetic study.
- Author
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Selvan PS, Gowda KV, Mandal U, Solomon WD, and Pal TK
- Subjects
- Administration, Oral, Antihypertensive Agents administration & dosage, Antihypertensive Agents blood, Antihypertensive Agents pharmacokinetics, Benzopyrans administration & dosage, Benzopyrans pharmacokinetics, Drug Combinations, Ethanolamines administration & dosage, Ethanolamines pharmacokinetics, Humans, Nebivolol, Reproducibility of Results, Tetrazoles administration & dosage, Tetrazoles pharmacokinetics, Valine administration & dosage, Valine blood, Valine pharmacokinetics, Valsartan, Benzopyrans blood, Chromatography, Liquid methods, Ethanolamines blood, Tandem Mass Spectrometry methods, Tetrazoles blood, Valine analogs & derivatives
- Abstract
A rapid, sensitive and accurate liquid chromatographic-tandem mass spectrometry method is described for the simultaneous determination of nebivolol and valsartan in human plasma. Nebivolol and valsartan were extracted from plasma using acetonitrile and separated on a C18 column. The mobile phase consisting of a mixture of acetonitrile and 0.05 mM formic acid (50:50 v/v, pH 3.5) was delivered at a flow rate of 0.25 ml/min. Atmospheric pressure ionization (API) source was operated in both positive and negative ion mode for nebivolol and valsartan, respectively. Selected reaction monitoring mode (SRM) using the transitions of m/z 406.1-->m/z 150.9; m/z 434.2-->m/z 179.0 and m/z 409.4-->m/z 228.1 were used to quantify nebivolol, valsartan and internal standard (IS), respectively. The linearity was obtained over the concentration range of 0.01-50.0 ng/ml and 1.0-2000.0 ng/ml and the lower limits of quantitation were 0.01 ng/ml and 1.0 ng/ml for nebivolol and valsartan, respectively. This method was successfully applied to the pharmacokinetic study of fixed dose combination (FDC) of nebivolol and valsartan formulation product after an oral administration to healthy human subjects.
- Published
- 2007
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45. Photo-induced decolorization of dimethylmethylene blue with selenious acid: a novel method to examine selective monomer-dimer distribution of the dye in micelle.
- Author
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Nath S, Ghosh SK, Panigrahi S, and Pal T
- Subjects
- Dimerization, Hydrophobic and Hydrophilic Interactions, Methylene Blue chemistry, Methylene Blue radiation effects, Photochemistry, Spectrophotometry, Static Electricity, Water chemistry, Color, Coloring Agents chemistry, Light, Methylene Blue analogs & derivatives, Micelles, Selenious Acid chemistry
- Abstract
In this report, selenious acid (H2SeO3) has been exploited to study the decolorization of a cationic dye, dimethylmethylene blue (DMMB) with UV-light. Micelles have effectively been employed as organized media to promote the rate of decolorization of the dye molecules. Micellar catalysis has been explained as a consequence of electrostatic, hydrophobic and charge transfer interactions. It has also been shown that strong charge transfer and electrostatic interaction lead to an appreciable enhancement of the reaction rate in micelle, whereas, weak hydrophobic interaction is of marginal importance. Existence of monomer-dimer equilibrium for the dye molecules under certain selective environments has been identified spectrophotometrically. Then the shift of dimer-monomer equilibrium of the dye has been successfully studied in aqueous and micellar environments exploiting photodecolorization process for the dye in solution. 'Salting-in' and 'salting-out' agents were introduced into the reaction mixture to examine the viability of the dye decolorization process for dye contaminated water samples.
- Published
- 2005
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46. Spectrophotometric determination of arsenic via arsine generation and in-situ colour bleaching of methylene blue (MB) in micellar medium.
- Author
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Kundu S, Ghosh SK, Mandal M, Pal T, and Pal A
- Abstract
A new spectrophotometric method has been developed to determine arsenic in parts-per-million (ppm) level. It is based on the colour bleaching of methylene blue (MB) in anionic micellar medium. Arsine gas was formed by borohydride reduction of arsenite/arsenate. Arsine generation and colour bleaching (quantification of arsenic) could be done in one-pot. The presence of silver or gold nanoparticles makes the determination faster. Different calibration graphs at the three different ranges of arsenic concentration such as 0-8.63, 0-1.11 and 0-0.11 ppm were constructed and limit of detection (LODs) were found to be 1.3, 0.53 and 0.03 ppm, respectively. The method is simple, rapid, reproducible (relative standard deviations lies within +/-5%) and eco-friendly. It is free from phosphate and silicate interferences and applicable for real sample analysis.
- Published
- 2002
- Full Text
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47. Tamoxifen and risk of endometrial cancer.
- Author
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Narod SA, Pal T, Graham T, Mitchell M, and Fyles A
- Subjects
- Antineoplastic Agents, Hormonal therapeutic use, Female, Humans, Risk Factors, Tamoxifen therapeutic use, Antineoplastic Agents, Hormonal adverse effects, Breast Neoplasms drug therapy, Endometrial Neoplasms chemically induced, Tamoxifen adverse effects
- Published
- 2001
- Full Text
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48. Spectrophotometric study of the interaction of some hydroxyanthraquinones (HAQs) with magnesium(II) in a cationic micelle.
- Author
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Pal T and Jana NR
- Abstract
Six different hydroxyanthraquinones (HAQs) in aqueous micellar (cationic, anionic and non-ionic) media were tested as effective and selective chelators for the MgII ion in alkaline conditions. Of these 1,4 and 1,8-dihydroxyanthraquinones were found to effectively bind to MgII ions and were useful for the ppm level spectral determination of MgII ion. The MgII ion forms 1 : 1 and 1 : 2 chelates with 1,4-and 1,8-dihydroxyanthraquinones, respectively, which have maximum absorption at 610 and 575 nm, respectively. MgII can be determined in the presence of a large excess of foreign ions including the CaII ion. The statistical analysis of the results, apparent pK(a), expected bathchromic shift of the reagent absorption, molar absorptivity change and electronic spectra in various organized media are discussed.
- Published
- 1994
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49. Acetothioacetanilide as a gravimetric reagent for palladium, platinum and rhodium.
- Author
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Pal T and Das J
- Abstract
Acetothioacetanilide, CH(3)CO . CH(2) . CS . NH . C(6)H(5) is found to be a very suitable gravimetric reagent for Pd(II), Pt(II) and Rh(III). The complexes [composition, M(C(10)H(10)NOS)(2); for M = Pd(II) and Pt(II), and M(C(10)H(10)NOS)(3)] are stable and can be weighed after drying at 105-110 degrees . Separation from base metals has been studied, and a structural interpretation made from DTA, TG and infrared data.
- Published
- 1983
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50. Silver-gelatin method for determination of inorganic peroxides in alkaline solution.
- Author
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Pal T, Maity DS, and Ganguly A
- Abstract
An aqueous solution of gelatin binds silver(I) at pH >7 and a yellow silver sol can be produced from this by reduction. The sol reacts with peroxide in strongly ammoniacal medium to give a colourless solution. The reaction may be used for photometric and visual titration of peroxide with relative standard deviations of 0.4 and 1.5% respectively and also for its spectrophotometric determination.
- Published
- 1988
- Full Text
- View/download PDF
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