25 results on '"Hanning, I."'
Search Results
2. Contributor contact details
- Author
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Fink-Gremmels, Johanna, primary, Crawshaw, R., additional, Alali, W.Q., additional, Ricke, S.C., additional, Okelo, P.O., additional, Liebana, E., additional, Hugas, M., additional, Veys, P., additional, Berben, G., additional, Dardenne, P., additional, Baeten, V., additional, Rose, M., additional, Hoogenboom, R., additional, López-Alonso, M., additional, Amlund, H., additional, Berntssen, M.H.G., additional, Lunestad, B.T., additional, Lundebye, A.-K., additional, Pettersson, H., additional, Monbaliu, S., additional, Van Peteghem, C., additional, De Saeger, S., additional, Smith, T.K., additional, Girish, C.K., additional, Colegate, S.M., additional, Stegelmeier, B.L., additional, Edgar, J.A., additional, O’Mahony, J., additional, Moloney, M., additional, Whelan, M., additional, Danaher, M., additional, Jarquin, R., additional, Hanning, I., additional, Burel, C., additional, Mantovani, A., additional, Kleter, G.A., additional, Kok, E.J., additional, Reuter, T., additional, Alexander, T.W., additional, McAllister, T.A., additional, Granby, K., additional, Mortensen, A., additional, Broesboel-Jensen, B., additional, Riviere, J.E., additional, Brera, C., additional, De Santis, B., additional, Prantera, E., additional, Woodgate, S.L., additional, Scheid, J.F., additional, and den Hartog, J., additional
- Published
- 2012
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3. Antimicrobials in animal feed: benefits and limitations
- Author
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Ricke, S.C., primary, Jarquin, R., additional, and Hanning, I., additional
- Published
- 2012
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4. Pasture flock chicken cecal microbiome responses to prebiotics and plum fiber feed amendments.
- Author
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Park SH, Perrotta A, Hanning I, Diaz-Sanchez S, Pendleton S, Alm E, and Ricke SC
- Subjects
- Animal Feed analysis, Animals, Bacteria genetics, Bacteria isolation & purification, Cecum microbiology, Diet veterinary, Dietary Supplements, Oligosaccharides administration & dosage, RNA, Ribosomal, 16S genetics, Sequence Analysis, DNA, Chickens microbiology, Dietary Fiber administration & dosage, Microbiota, Oligosaccharides pharmacology, Prebiotics administration & dosage, Prunus domestica
- Abstract
When prebiotics and other fermentation substrates are delivered to animals as feed supplements, the typical goal is to improve weight gain and feed conversion. In this work, we examined pasture flock chicken cecal contents using next generation sequencing (NGS) to identify and understand the composition of the microbiome when prebiotics and fermentation substrates were supplemented. We generated 16S rRNA sequencing data for 120 separate cecal samples from groups of chickens receiving one of 3 prebiotics or fiber feed additives. The data indicated that respective feed additives enrich for specific bacterial community members and modulate the diversity of the microbiome. We applied synthetic learning in microbial ecology (SLiME) analysis to interpret 16S rRNA microbial community data and identify specific bacterial operational taxonomic units (OTU) that are predictive of the particular feed additives used in these experiments. The results suggest that feed can influence microbiome composition in a predictable way, and thus diet may have indirect effects on weight gain and feed conversion through the microbiome., (© 2017 Poultry Science Association Inc.)
- Published
- 2017
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5. Zoonotic bacterial pathogens and mixed crop-livestock farming.
- Author
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Salaheen S, Chowdhury N, Hanning I, and Biswas D
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- Animal Husbandry, Animals, Bacterial Physiological Phenomena, Livestock, Organic Agriculture, Agriculture methods, Animal Diseases epidemiology, Animal Diseases microbiology, Animal Diseases prevention & control, Animal Diseases transmission, Zoonoses epidemiology, Zoonoses microbiology, Zoonoses prevention & control, Zoonoses transmission
- Abstract
Use of mixed crop-livestock farms (MCLFs) is one of the oldest and most traditional farming methods practiced all over the world, and MCLFs are still one of the major systems of food production, particularly for organic foods. On these typically small farms, livestock are reared primarily on grass and naturally grown crops, while composted animal wastes are used to fertilize the soil for growing crops. Specific to organic MCLFs, biosecurity challenges arise from the fact that animals are reared outdoors, which increases potential for contact with disease vectors including wild birds, rodents, and insects. Organic regulations do not allow the use of chemicals and antibiotics; therefore, alternative methods for control of disease and zoonotic pathogens must be used. Due to the biosecurity challenges and the complexity of the MCLF environment, methods for control of zoonotic pathogens need to be carefully considered in order to be effective and to abide by organic regulations if required. The objectives of this study are to define the complex routes of transmission, as well as the prevalence of potential zoonotic and possible interruption strategies of these pathogens among the food animals and crops produced on MCLFs.
- Published
- 2015
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6. Botanical alternatives to antibiotics for use in organic poultry production.
- Author
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Diaz-Sanchez S, D'Souza D, Biswas D, and Hanning I
- Subjects
- Animals, Anti-Infective Agents pharmacology, Diet veterinary, Plant Extracts pharmacology, Animal Feed analysis, Animal Husbandry methods, Anti-Infective Agents analysis, Organic Agriculture methods, Plant Extracts chemistry, Poultry, Spices analysis
- Abstract
The development of antibiotic resistant pathogens has resulted from the use of sub-therapeutic concentrations of antibiotics delivered in poultry feed. Furthermore, there are a number of consumer concerns regarding the use of antibiotics in food animals including residue contamination of poultry products and antibiotic resistant bacterial pathogens. These issues have resulted in recommendations to reduce the use of antibiotics as growth promoters in livestock in the United States. Unlike conventional production, organic systems are not permitted to use antibiotics. Thus, both conventional and organic poultry production need alternative methods to improve growth and performance of poultry. Herbs, spices, and various other plant extracts are being evaluated as alternatives to antibiotics and some do have growth promoting effects, antimicrobial properties, and other health-related benefits. This review aims to provide an overview of herbs, spices, and plant extracts, currently defined as phytobiotics as potential feed additives., (© 2015 Poultry Science Association Inc.)
- Published
- 2015
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7. Detection of quinolones in commercial eggs obtained from farms in the Espaíllat Province in the Dominican Republic.
- Author
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Moscoso S, de los Santos FS, Andino AG, Diaz-Sanchez S, and Hanning I
- Subjects
- Animal Husbandry methods, Animals, Dominican Republic, Anti-Bacterial Agents analysis, Chickens metabolism, Drug Residues analysis, Eggs analysis, Quinolones analysis
- Abstract
Previously, we reported the use of quinolones in broiler chickens resulted in residues in retail poultry meat obtained from nine districts in the Santiago Province of the Dominican Republic. Residues in poultry products are a concern due to consumer allergies and the potential to develop antibiotic-resistant bacteria. Given the use of quinolones in poultry production and our previous findings in poultry meat, the objective of this study was to evaluate the presence of quinolone residues in eggs. Samples were collected from 48 different farms located in three of the four municipalities (Moca, Cayetano Germosén, and Jamao) of the Espaíllat Province. Each farm was sampled three times between July and September for a total of 144 samples. Samples were evaluated qualitatively and quantitatively for quinolone residues using the Equinox test. Operation systems (cage or floor), seasonality, and location were considered along with egg-producer sizes that were defined as small scale, <30,000 eggs per day; medium scale, 30,000 to 60,000 eggs per day; or large scale, >60,000 eggs per day. From small-, medium-, and large-scale producers, 69, 50, and 40% of samples were positive for quinolone residues, respectively. A greater number of samples were positive (61%) in floor-laying hen producers compared with those using cages (40%). In the Jamao municipality, 67% of the samples were positive compared with Moca and Cayetano Germosén, where 56 and 25% of samples were positive, respectively. Sampling time had an effect on percent positives: samples collected in July, August, and September were 71, 19, and 63% positive, respectively. Overall, 51% of the samples obtained from eggs produced in the province of Espaíllat were positive for quinolone residues at levels higher than the maximum limits for edible tissue established by the regulatory agencies, including the European Union and U.S. Department of Agriculture. The results obtained from this research confirmed the presence of quinolone residue in eggs, which may present a health risk to some consumers.
- Published
- 2015
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8. Survival of Salmonella enterica in poultry feed is strain dependent.
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Andino A, Pendleton S, Zhang N, Chen W, Critzer F, and Hanning I
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- Animals, Bacterial Proteins metabolism, Poultry, Real-Time Polymerase Chain Reaction veterinary, Salmonella enterica genetics, Virulence, Animal Feed microbiology, Bacterial Proteins genetics, Food Microbiology, Gene Expression Regulation, Bacterial, Poultry Diseases microbiology, Salmonella Infections, Animal microbiology, Salmonella enterica pathogenicity, Salmonella enterica physiology
- Abstract
Feed components have low water activity, making bacterial survival difficult. The mechanisms of Salmonella survival in feed and subsequent colonization of poultry are unknown. The purpose of this research was to compare the ability of Salmonella serovars and strains to survive in broiler feed and to evaluate molecular mechanisms associated with survival and colonization by measuring the expression of genes associated with colonization (hilA, invA) and survival via fatty acid synthesis (cfa, fabA, fabB, fabD). Feed was inoculated with 1 of 15 strains of Salmonella enterica consisting of 11 serovars (Typhimurium, Enteriditis, Kentucky, Seftenburg, Heidelberg, Mbandanka, Newport, Bairely, Javiana, Montevideo, and Infantis). To inoculate feed, cultures were suspended in PBS and survival was evaluated by plating samples onto XLT4 agar plates at specific time points (0 h, 4 h, 8 h, 24 h, 4 d, and 7 d). To evaluate gene expression, RNA was extracted from the samples at the specific time points (0, 4, 8, and 24 h) and gene expression measured with real-time PCR. The largest reduction in Salmonella occurred at the first and third sampling time points (4 h and 4 d) with the average reductions being 1.9 and 1.6 log cfu per g, respectively. For the remaining time points (8 h, 24 h, and 7 d), the average reduction was less than 1 log cfu per g (0.6, 0.4, and 0.6, respectively). Most strains upregulated cfa (cyclopropane fatty acid synthesis) within 8 h, which would modify the fluidity of the cell wall to aid in survival. There was a weak negative correlation between survival and virulence gene expression indicating downregulation to focus energy on other gene expression efforts such as survival-related genes. These data indicate the ability of strains to survive over time in poultry feed was strain dependent and that upregulation of cyclopropane fatty acid synthesis and downregulation of virulence genes were associated with a response to desiccation stress.
- Published
- 2014
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9. Yerba mate enhances probiotic bacteria growth in vitro but as a feed additive does not reduce Salmonella Enteritidis colonization in vivo.
- Author
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Gonzalez-Gil F, Diaz-Sanchez S, Pendleton S, Andino A, Zhang N, Yard C, Crilly N, Harte F, and Hanning I
- Subjects
- Animal Feed analysis, Animals, Bacteria growth & development, Cecum microbiology, Diet veterinary, Dietary Supplements analysis, Lactobacillus drug effects, Lactobacillus growth & development, Pediococcus drug effects, Pediococcus growth & development, Plant Extracts chemistry, Plant Leaves chemistry, Poultry Diseases microbiology, Probiotics administration & dosage, Salmonella Infections, Animal microbiology, Salmonella enteritidis drug effects, Salmonella enteritidis growth & development, Bacteria drug effects, Chickens, Ilex paraguariensis chemistry, Poultry Diseases drug therapy, Probiotics pharmacology, Salmonella Infections, Animal drug therapy
- Abstract
Yerba mate (Ilex paraguariensis) is a tea known to have beneficial effects on human health and antimicrobial activity against some foodborne pathogens. Thus, the application of yerba mate as a feed additive for broiler chickens to reduce Salmonella colonization was evaluated. The first in vitro evaluation was conducted by suspending Salmonella Enteritidis and lactic acid bacteria (LAB) in yerba mate extract. The in vivo evaluations were conducted using preventative and horizontal transmission experiments. In all experiments, day-of-hatch chicks were treated with one of the following 1) no treatment (control); 2) ground yerba mate in feed; 3) probiotic treatment (Lactobacillus acidophilus and Pediococcus; 9:1 administered once on day of hatch by gavage); or 4) both yerba mate and probiotic treatments. At d 3, all chicks were challenged with Salmonella Enteritidis (preventative experiment) or 5 of 20 chicks (horizontal transmission experiment). At d 10, all birds were euthanized, weighed, and cecal contents enumerated for Salmonella. For the in vitro evaluation, antimicrobial activity was observed against Salmonella and the same treatment enhanced growth of LAB. For in vivo evaluations, none of the yerba mate treatments significantly reduced Salmonella Enteritidis colonization, whereas the probiotic treatment significantly reduced Salmonella colonization in the horizontal transmission experiment. Yerba mate decreased chicken BW and decreased the performance of the probiotic treatment when used in combination. In conclusion, yerba mate had antimicrobial activity against foodborne pathogens and enhanced the growth of LAB in vitro, but in vivo yerba mate did not decrease Salmonella Enteritidis colonization.
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- 2014
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10. Next-generation sequencing: the future of molecular genetics in poultry production and food safety.
- Author
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Diaz-Sanchez S, Hanning I, Pendleton S, and D'Souza D
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- Animals, Campylobacter genetics, Campylobacter isolation & purification, Campylobacter physiology, Campylobacter Infections microbiology, Campylobacter Infections veterinary, Gastrointestinal Tract microbiology, Gastrointestinal Tract physiology, Genomics economics, Nucleic Acid Amplification Techniques economics, Nucleic Acid Amplification Techniques methods, Poultry, Poultry Diseases microbiology, Salmonella Infections, Animal microbiology, Salmonella enterica genetics, Salmonella enterica isolation & purification, Salmonella enterica physiology, Animal Husbandry methods, Food Safety methods, Genomics methods, Nucleic Acid Amplification Techniques veterinary
- Abstract
The era of molecular biology and automation of the Sanger chain-terminator sequencing method has led to discovery and advances in diagnostics and biotechnology. The Sanger methodology dominated research for over 2 decades, leading to significant accomplishments and technological improvements in DNA sequencing. Next-generation high-throughput sequencing (HT-NGS) technologies were developed subsequently to overcome the limitations of this first generation technology that include higher speed, less labor, and lowered cost. Various platforms developed include sequencing-by-synthesis 454 Life Sciences, Illumina (Solexa) sequencing, SOLiD sequencing (among others), and the Ion Torrent semiconductor sequencing technologies that use different detection principles. As technology advances, progress made toward third generation sequencing technologies are being reported, which include Nanopore Sequencing and real-time monitoring of PCR activity through fluorescent resonant energy transfer. The advantages of these technologies include scalability, simplicity, with increasing DNA polymerase performance and yields, being less error prone, and even more economically feasible with the eventual goal of obtaining real-time results. These technologies can be directly applied to improve poultry production and enhance food safety. For example, sequence-based (determination of the gut microbial community, genes for metabolic pathways, or presence of plasmids) and function-based (screening for function such as antibiotic resistance, or vitamin production) metagenomic analysis can be carried out. Gut microbialflora/communities of poultry can be sequenced to determine the changes that affect health and disease along with efficacy of methods to control pathogenic growth. Thus, the purpose of this review is to provide an overview of the principles of these current technologies and their potential application to improve poultry production and food safety as well as public health.
- Published
- 2013
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11. Evaluation of whole-genome sequencing as a genotyping tool for Campylobacter jejuni in comparison with pulsed-field gel electrophoresis and flaA typing.
- Author
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Pendleton S, Hanning I, Biswas D, and Ricke SC
- Subjects
- Animals, Bacterial Typing Techniques veterinary, Campylobacter Infections microbiology, Campylobacter Infections veterinary, Chickens microbiology, DNA, Bacterial analysis, Electrophoresis, Gel, Pulsed-Field veterinary, Flagellin classification, Genotype, Phylogeny, Sequence Alignment veterinary, Sequence Analysis, DNA veterinary, Campylobacter jejuni classification, Campylobacter jejuni genetics, Flagellin genetics, Genome, Bacterial, Oligonucleotide Array Sequence Analysis
- Abstract
Campylobacter jejuni is a leading cause of foodborne illness, with poultry and poultry products being leading sources of infection. Epidemiological efforts to trace Campylobacter can be challenging because of the extreme genetic diversity of this bacterium relative to other foodborne pathogens. To enhance tracking and epidemiological efforts, whole-genome sequencing has been used for other foodborne pathogens but not yet been evaluated for practicality with Campylobacter. Thus, the purpose of this study was to evaluate whole-genome sequencing as a genotyping method for C. jejuni by comparing it with 2 commonly used genotyping methods, namely pulsed-field gel electrophoresis (PFGE) and flaA typing. Whole-genome sequence data were generated using the Roche-454 sequencing platform to map Campylobacter strains (VOL_3, VOL_5, VOL_8, VOL_11, and VOL_20) isolated from conventional and organic poultry. Five additional isolates with published genomes were also compared. The PFGE profiles were created using Sma I digestion. For the flaA short variable region sequencing, standard PCR methods were used and high-quality Sanger reads were generated. The PFGE profiles of strains VOL_3 and VOL_11 were found to be indistinguishable, and strain VOL_20 was found indistinguishable from NCTC 11168. Whole-genome comparisons between strains VOL_20 and 11168 were in agreement with the obtained PFGE profiles, as these 2 isolates had very similar genome sizes, a number of shared genes (1,580), and very similar % G-C content (30.6). Of the 8 strains, 2 strains (VOL_3 and VOL_11) had identical flaA types. Whole-genome sequencing was the most discriminatory of the typing methods. However, the cost and time effort needed to sequence and assemble the genomes may hinder efforts, and therefore, we conclude that more bioinformatics tools need to be developed for whole-genome sequencing to be used as an epidemiological tool.
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- 2013
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12. Detection of quinolones in poultry meat obtained from retail centers in Santiago Province, the Dominican Republic.
- Author
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Silfrany RO, Caba RE, Solís de Los Santos F, and Hanning I
- Subjects
- Animals, Dominican Republic, Food Safety, Hazard Analysis and Critical Control Points, Humans, Drug Residues analysis, Food Contamination analysis, Meat analysis, Poultry metabolism, Quinolones analysis
- Abstract
In the Dominican Republic, poultry consumption per capita is greater than 34 kg of poultry meat per year. However, antibiotics, specifically the quinolone group, may be overused and can result in residues in the poultry meat. These residues are of concern because consumers may have allergies to antibiotics and antibiotic-resistant bacteria can develop from overuse of antibiotics in production. Little is known concerning this issue specifically for Santiago Province in the Dominican Republic. Thus, the main purpose of this research was to evaluate the incidence of residual quinolones in poultry meat and determine whether any residues detected were higher than the residue maximum limits (100 μg/kg) established by food industry authorities, including the U.S. Food and Drug Administration and European Food Safety Authority. A total of 135 samples of chicken breast were taken from different retail meat centers in the nine municipalities of Santiago Province (Santiago, Tamboril, Sabana Iglesia, Villa Bisonó, Puñal, Villa González, Licey, Jánico, and San José De Las Matas) and were analyzed using the Equinox test (Immunotec, Swanton, VT). Of the 135 samples analyzed, 50% from Sabana Iglesia, 20% from Licey, 20% from San Jose De Las Matas, and 6.25% from Santiago contained residues of quinolones higher than the residue maximum limits. No quinolone residues were detected in samples obtained from Janico, Punal, Tamboril, Villa Bisono, or Villa Gonzalez. The results of this investigation suggest that some poultry meat sold for human consumption in Santiago Province of the Dominican Republic contains quinolone residues and may represent a health risk to some consumers.
- Published
- 2013
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13. Modifying the gastrointestinal ecology in alternatively raised poultry and the potential for molecular and metabolomic assessment.
- Author
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Park SH, Hanning I, Perrota A, Bench BJ, Alm E, and Ricke SC
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- Animals, Bacteria genetics, Bacterial Physiological Phenomena, Bacterial Proteins analysis, Bacterial Proteins genetics, Bacterial Proteins metabolism, Foodborne Diseases epidemiology, Foodborne Diseases virology, Gastrointestinal Tract virology, Humans, Metabolome, Organic Agriculture, Poultry Diseases epidemiology, Poultry Diseases virology, Prebiotics analysis, Animal Husbandry methods, Bacteria metabolism, Foodborne Diseases microbiology, Gastrointestinal Tract microbiology, Poultry, Poultry Diseases microbiology
- Abstract
Consumer demand for nonconventional poultry products continues to increase in the United States. In pasture flock and organic poultry production, probiotics and prebiotic feed additives have potential advantages because they are thought to promote intestinal health and may offer a replacement for current intervention strategies that are not considered acceptable for these production systems. Prebiotics have been demonstrated to produce effects on the gastrointestinal tract including modulation of microflora by promoting selective increases in beneficial bacteria concomitant with decreases in undesirable bacteria. In-depth assessment of microbial community changes during host growth and development as well as the establishment of beneficial microbial species by adding biologicals such as probiotics and prebiotics is important to achieve predictable and consistent improvements in chicken health and productivity. To analyze microflora shifts and metabolites produced by bacteria in the gut as well as host responses to biological additives, sophisticated molecular techniques are now available and are becoming more widely used. Polymerase chain reaction assays, denaturing gradient gel electrophoresis, and temperature gradient gel electrophoresis offer approaches for detecting microbial shifts in the gut. Likewise, the employment of microarrays and molecular analysis of gut tissues can reveal insight into gut physiological and responses to dietary and other changes. Recent application of 16S rDNA sequencing and analysis utilizing basic local alignment search tool (BLAST) and FASTA databases on poultry gut samples have the potential to provide a much more in-depth assessment of the gut microbiome. Utilizing ultra pressure liquid chromatography-mass spectroscopy profiling, metabolomic assessment of gut contents will also allow for parallel comparisons of changes in the gut contents with microbiome and physiological responses. Combining all these technologies will provide a plenary understanding of poultry gut health in alternative production systems.
- Published
- 2013
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14. Assessment of production performance in 2 breeds of broilers fed prebiotics as feed additives.
- Author
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Hanning I, Clement A, Owens C, Park SH, Pendleton S, Scott EE, Almeida G, Gonzalez Gil F, and Ricke SC
- Subjects
- Animal Feed analysis, Animal Nutritional Physiological Phenomena, Animals, Body Composition, Breeding, Intestines anatomy & histology, Weight Gain, Chickens genetics, Chickens growth & development, Diet veterinary, Dietary Supplements, Prebiotics
- Abstract
Pasture-flock-raised poultry are becoming an increasingly popular product, but only limited options are currently available for maintaining gut health. For these producers, prebiotics are an attractive option because they are generally recognized as safe (GRAS) and can be mixed into the feed and thus do not require adjustments to production protocols. However, if prebiotic treatments reduce production performance, they would not be useful to producers. Thus, the objective of this study was to measure performance of pasture-raised broilers fed 1 of 3 prebiotic treatments. For these trials, 2 breeds of birds were used: Naked Neck slow-growing breeds and Cornish White Rock cross fast-growing breeds. The experimental design was replicated for each breed. A total of 340 birds were split into 4 groups, each group fed one feed additive: 1) galactoligosaccharides (2% wt/wt), 2) fructooligosaccharides (1% wt/wt), 3) plum fibers (1% wt/wt), or 4) no additives. During the 8-wk rearing period, 10 birds from each group were collected and euthanized to take small intestine samples. Histological preparations were made from the small intestine tissue, and 4 measurements of villi height and crypt depth from each cross section were taken. Throughout the study, mortality was monitored and BW measurements were taken at 2-wk intervals. For the Cornish White Rock cross, the group receiving the feed supplemented with fructooligosaccharides had higher (P < 0.05) 8-wk BW than those fed Plum; control and birds fed galactoligosaccharides were intermediate. For the Naked Neck breed, the group receiving the plum fibers had the highest final BW. It appears that all 3 feed supplements offered some protective effect for alterations in villi length and crypt depth due to feed withdrawal, but only for the Naked Neck breed. The data indicate the 3 prebiotics utilized in this study could be used without risk of decreasing production performance, but only for Naked Neck breeds.
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- 2012
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15. Optimized culturing and nucleic acid-based methods for the detection of Salmonella enterica in poultry environments.
- Author
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Schultz J, Jarquin R, Ricke SC, and Hanning I
- Subjects
- Animals, Culture Media, DNA, Bacterial, Environment, Food Microbiology, Housing, Animal, Real-Time Polymerase Chain Reaction veterinary, Animal Feed microbiology, Bacteriological Techniques veterinary, Chickens microbiology, Salmonella enterica isolation & purification
- Abstract
The main objective of this trial was to set up a series of assays following quantified inoculation of Salmonella samples in 2 initial enrichment methods to ultimately determine the most effective and fastest detection method for recovery of Salmonella in a poultry environment matrix. Samples were randomly split into 2 different containers containing either buffered peptone water (BPW) + yeast extract, or tetrathionate broth (TT) with added iodine and Brilliant Green solution 0.1%. A frozen stock Salmonella culture was thawed and serially diluted 10-fold to inoculate 100 µL of the dilution into the enriched samples. The samples were incubated at 42 and 37°C, respectively, for 24 h and secondarily enriched in modified semi-solid Rappaport Vassiliadis (MSRV) incubated at 42°C. All samples then were reincubated under the same conditions. After secondary enrichment, the samples were streaked onto Chromogenic agar/ XLT4 bi-plates and incubated under the same conditions. After initial inoculation and each 24-h incubation, a portion of the enriched samples was analyzed using a real-time PCR assay. The results of this trial indicate that recovery of Salmonella in a culture-based assay may be enhanced by up to 3 logs by using the TT as the initial enrichment media compared with BPW. The incorporation of MSRV as a secondary cultural selective media after the TT gave the best recovery of Salmonella. These data indicate that considerable time can be saved by using TT as an initial media for Salmonella recovery.
- Published
- 2012
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16. Listeria monocytogenes and hemolytic Listeria innocua in poultry.
- Author
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Milillo SR, Stout JC, Hanning IB, Clement A, Fortes ED, den Bakker HC, Wiedmann M, and Ricke SC
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- Animals, Cecum microbiology, Housing, Animal, Listeria genetics, Listeriosis microbiology, Phylogeny, Poaceae microbiology, Soil Microbiology, Animal Husbandry, Chickens, Listeria classification, Listeriosis veterinary, Poultry Diseases microbiology
- Abstract
Listeria monocytogenes is a ubiquitous, saprophytic, Gram-positive bacterium and occasional food-borne pathogen, often associated with ready-to-eat meat products. Because of the increased consumer interest in organic, all natural, and free range poultry products, it is important to understand L. monocytogenes in the context of such systems. Pasture-reared poultry were surveyed over the course of two 8-wk rearing periods. Cecal, soil, and grass samples were collected for Listeria isolation and characterization. Seven of 399 cecal samples (or 1.75%) were Listeria-positive. All positive cecal samples were obtained from broilers sampled at 2 wk of age. Grass and soil samples were collected from the pasture both before and after introduction of the poultry. Environmental samples collected after introduction of poultry were significantly more likely to contain Listeria (P < 0.001). The results of analytical profile index Listeria, sigB allelic typing, and hlyA PCR tests found that both L. monocytogenes and L. innocua, including hemolytic L. innocua, were recovered from the cecal and environmental (grass/soil) samples. The sigB allelic typing also revealed that (1) positive samples could be composed of 2 or more allelic types; (2) allelic types found in cecal samples could also be found in the environment; and (3) allelic types could persist through the 2 rearing periods. Our data indicate that both pasture-reared poultry and their environment can be contaminated with L. monocytogenes and hemolytic L. innocua.
- Published
- 2012
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17. Characterization of Staphylococcus aureus isolates from retail chicken carcasses and pet workers in Northwest Arkansas.
- Author
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Hanning I, Gilmore D, Pendleton S, Fleck S, Clement A, Park SH, Scott E, and Ricke SC
- Subjects
- Animals, Arkansas, Colony Count, Microbial, Consumer Product Safety, Drug Resistance, Multiple, Bacterial, Food Microbiology, Genotype, Humans, Methicillin-Resistant Staphylococcus aureus drug effects, Methicillin-Resistant Staphylococcus aureus isolation & purification, Skin microbiology, Anti-Bacterial Agents pharmacology, Chickens microbiology, Drug Resistance, Bacterial, Food Contamination analysis, Staphylococcus aureus drug effects, Staphylococcus aureus isolation & purification
- Abstract
Staphylococcus aureus can be carried on the skin and nasal passages of humans and animals as a commensal. A case of human methicillin-resistant S. aureus infection resulting from contact with pork has been reported. Poultry carcasses are sold at retail with the skin intact, but pork and beef typically are not. Thus, the risk of methicillin-resistant S. aureus human infection from whole raw poultry carcasses may be greater than that of exposure from pork or beef. The objective of this study was to isolate and characterize S. aureus from whole retail poultry carcasses and compare the isolates to S. aureus isolates from humans. A total of 25 S. aureus isolates were collected from 222 whole poultry carcasses. The isolates were characterized phenotypically with antibiotic resistance disc diffusion assays and genotypically using multilocus sequence typing. A total of 17 S. aureus isolates obtained from healthy humans were included and characterized in the same way as the poultry isolates. Staphylococcus spp. were recovered from all poultry carcasses. Only 25 poultry carcasses (11.2%) were contaminated with S. aureus. Of these 25 isolates, 36% were resistant to at least one of the antibiotics tested and 20% were resistant to two or more antibiotics tested. However, 100% of the human isolates were resistant to at least one of the antibiotics and 94% were resistant to two or more antibiotics. The results of the multilocus sequence typing indicate that most of the isolates grouped according to source. These results indicate a low prevalence of S. aureus present in poultry, and the isolates were not phenotypically similar to human isolates. The low number of S. aureus isolates from this study indicates that chicken carcasses would appear to not be a significant source of this bacterium.
- Published
- 2012
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18. In vitro invasion of laying hen ovarian follicles by Salmonella Enteritidis strains.
- Author
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Dawoud TM, Hererra P, Hanning I, Kwon YM, and Ricke SC
- Subjects
- Animals, Female, Chickens, Ovarian Follicle microbiology, Poultry Diseases microbiology, Salmonella Infections, Animal microbiology, Salmonella enteritidis
- Abstract
Salmonella is the major foodborne bacterial pathogen worldwide. Among numerous serotypes, Salmonella Enteritidis (SE) is one of the most common Salmonella serotypes responsible for human infections in the United States. The main source of SE outbreaks is foods associated with raw or undercooked chicken eggs. Salmonella Enteritidis is the only serotype that routinely contaminates eggs. The transovarian transmission of SE and subsequent contamination of the eggs before egg shell formation is considered to be the main route of egg contamination by SE. To evaluate whether invasion of ovarian follicles is an important step during the production of eggs contaminated by SE, we used an in vitro invasion assay to determine ovarian follicle invasion by 5 SE strains. After inoculating the freshly collected ovarian follicles, all 5 SE strains were able to invade into the follicles after 2 h of incubation at 37°C. The mean percentage of SE invasion ranged from 0.016 to 0.034% and no significant difference was found among the SE strains. For Escherichia coli K-12 strain, which was used as a negative control, the mean percentage of invasion was 0.0003%. The in vitro follicle invasion by SE strains demonstrated in this study may reflect the ability of the strains to invade ovarian follicles in laying hens once SE cells reach ovaries through various routes.
- Published
- 2011
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19. Caprylic Acid reduces enteric campylobacter colonization in market-aged broiler chickens but does not appear to alter cecal microbial populations.
- Author
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Solís de los Santos F, Hume M, Venkitanarayanan K, Donoghue AM, Hanning I, Slavik MF, Aguiar VF, Metcalf JH, Reyes-Herrera I, Blore PJ, and Donoghue DJ
- Subjects
- Animals, Campylobacter isolation & purification, Campylobacter Infections microbiology, Campylobacter Infections prevention & control, Campylobacter Infections veterinary, Carrier State veterinary, Colony Count, Microbial, Consumer Product Safety, Food Contamination prevention & control, Food Deprivation, Humans, Poultry Diseases microbiology, Poultry Diseases prevention & control, Random Allocation, Anti-Bacterial Agents pharmacology, Campylobacter drug effects, Caprylates pharmacology, Cecum microbiology, Chickens microbiology
- Abstract
Campylobacter is a leading cause of foodborne illness in the United States, and epidemiological evidence indicates poultry products to be a significant source of human Campylobacter infections. Caprylic acid, an eight-carbon medium-chain fatty acid, reduces Campylobacter colonization in chickens. How caprylic acid reduces Campylobacter carriage may be related to changes in intestinal microflora. To evaluate this possibility, cecal microbial populations were evaluated with denaturing gradient gel electrophoresis from market-age broiler chickens fed caprylic acid. In the first trial, chicks (n = 40 per trial) were assigned to four treatment groups (n = 10 birds per treatment group): positive controls (Campylobacter, no caprylic acid), with or without a 12-h feed withdrawal before slaughter; and 0.7% caprylic acid supplemented in feed for the last 3 days of the trial, with or without a 12-h feed withdrawal before slaughter. Treatments were similar for trial 2, except caprylic acid was supplemented for the last 7 days of the trial. At age 14 days, chicks were orally challenged with Campylobacter jejuni, and on day 42, ceca were collected for denaturing gradient gel electrophoresis and Campylobacter analysis. Caprylic acid supplemented for 3 or 7 days at 0.7% reduced Campylobacter compared with the positive controls, except for the 7-day treatment with a 12-h feed withdrawal period. Denaturing gradient gel electrophoresis profiles of the cecal content showed very limited differences in microbial populations. The results of this study indicate that caprylic acid's ability to reduce Campylobacter does not appear to be due to changes in cecal microflora.
- Published
- 2010
- Full Text
- View/download PDF
20. Campylobacter biofilm phenotype exhibits reduced colonization potential in young chickens and altered in vitro virulence.
- Author
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Hanning I, Donoghue DJ, Jarquin R, Kumar GS, Aguiar VF, Metcalf JH, Reyes-Herrera I, and Slavik M
- Subjects
- Animals, Campylobacter Infections microbiology, Campylobacter jejuni pathogenicity, Cell Line, Mammals, Virulence, Biofilms growth & development, Campylobacter Infections veterinary, Campylobacter jejuni classification, Campylobacter jejuni physiology, Chickens, Poultry Diseases microbiology
- Abstract
In this study, we evaluated the ability of different Campylobacter phenotypes (biofilm versus planktonic) to colonize young poultry. It has been suggested that a persistent Campylobacter biofilm reservoir may be involved in the initial contamination of poultry flocks. Campylobacter jejuni cultured adherent to agar was utilized as the biofilm model and C. jejuni cultured in broth was evaluated as the planktonic model. In 2 independent trials, 1-d-old broiler chicks were given 1 of 3 treatments: 1) 10(5) cfu.mL(-1) of C. jejuni cultured in broth, 2) 10(5) cfu.mL(-1) of C. jejuni cultured adherent to agar, or 3) no C. jejuni (negative control). Cecal contents of all birds were evaluated by culturing 12 d after the initial challenge with C. jejuni. In both trials, birds challenged with C. jejuni cultured in broth had approximately 3 to 4 log higher cecal Campylobacter concentration than birds challenged with C. jejuni cultured adherent to agar. Using 2 cell lines (INT 407 and DF1), virulence of C. jejuni cultured in broth versus adherent to agar also was evaluated by challenging monolayers of eukaryotic cells with 1 of 3 treatments: 1) 10(5) cfu.mL(-1) of C. jejuni cultured in broth, 2) 10(5) cfu.mL(-1) of C. jejuni cultured adherent to agar, or 3) no C. jejuni (negative control). The virulence study also showed differences of C. jejuni cultured in broth or agar in attachment and invasion abilities to tissue culture cells, but differences were not as consistent as with the chick colonization study. This study indicates that phenotype may play a role in colonization of chickens and virulence by C. jejuni.
- Published
- 2009
- Full Text
- View/download PDF
21. Carcinoembryonic antigen.
- Author
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Seth J, Sturgeon CM, and Hanning I
- Subjects
- Humans, Quality Control, Carcinoembryonic Antigen analysis
- Published
- 1988
- Full Text
- View/download PDF
22. Progress and problems in immunoassays for serum pituitary gonadotrophins: evidence from the UK external quality assessment schemes, (EQAS) 1980-1988.
- Author
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Seth J, Hanning I, Bacon RR, and Hunter WM
- Subjects
- Animals, Clinical Laboratory Techniques, Follicle Stimulating Hormone blood, Humans, Immunoassay, Luteinizing Hormone blood, Mice immunology, Quality Control, Radioimmunoassay, Reference Values, Sheep immunology, United Kingdom, Gonadotropins blood
- Abstract
Trends in the quality of assays for serum gonadotrophins performed by laboratories in the UK EQAS during the 1980s are reviewed, with particular reference to the effects of the recent introduction of immunometric assays (IMA) as an alternative to radioimmunoassay (RIA). IMA gave results which were on average 17% higher than RIA for FSH, and 33% lower for LH. These bias characteristics were not entirely accounted for by differences in assay standardisation, but appeared to reflect the different isoforms of the hormones detected by the monoclonal antibodies used in the IMA. Between-laboratory agreement remained, consequently, unsatisfactory overall (geometric coefficient of variation, GCV, 20-30%), although good within method groups (GCV 10%). IMA were less vulnerable to non-specific background interference than many RIA, and could avoid interference from HCG. Some IMA were, however, vulnerable to interference from heterophilic antibodies in patients' sera. The differences between RIA and the various IMA in numerical values reported, and in their vulnerability to interferences underline the need for care in interpreting assay results.
- Published
- 1989
- Full Text
- View/download PDF
23. Measuring serum gonadotropins: a cautionary note.
- Author
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Seth J, Hanning I, Jacobs HS, and Jeffcoate SL
- Subjects
- Humans, Immunoassay methods, Follicle Stimulating Hormone blood, Luteinizing Hormone blood
- Published
- 1989
- Full Text
- View/download PDF
24. Factors associated with the quality of laboratory performance in the United Kingdom external quality assessment scheme for serum growth hormone.
- Author
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Seth J and Hanning I
- Subjects
- Laboratories organization & administration, Quality Control, Radioimmunoassay, Risk Factors, United Kingdom, Growth Substances blood, Laboratories standards
- Abstract
A search was made for associations between poor performance in the UK External Quality Assessment Scheme (EQAS) for serum growth hormone (GH), and a range of factors including assay method, laboratory workload and staffing, and Internal Quality Control (IQC) procedures. On the basis of the factors identified as being associated with poor performance we recommend the following. 1. Laboratories using RIA for GH should routinely analyse samples at two dilutions and report a mean result. 2. The use of 125I-GH which is 5 or more weeks old should be avoided. Tracer should also be chromatographed to remove aggregate before use. 3. Laboratories using RIA should avoid using a standard curve which covers too wide a range concentration; a curve midpoint (ie GH concentration to reduce the zero standard binding by 50%) of about 8 mU/l or less is probably acceptable. 4. It should be noted that high workloads present a risk of some loss in quality of responsible for checking IQC data. 6. Laboratories which do not have the resources to maintain fully their own RIA as outlined above should carefully consider use of an unbiased, precise IRMA. The UK EQAS has identified two assays (Boots-Celltech Sucrosep, NETRIA) that appear to meet these criteria [2]. The above observations may also be relevant to immunoassays for other peptide hormones.
- Published
- 1988
- Full Text
- View/download PDF
25. Quality of performance of assays for serum growth hormone in the United Kingdom (UK): evidence from the UK external quality assessment scheme, 1980-1987.
- Author
-
Seth J, Hanning I, Bacon RR, and Hunter WM
- Subjects
- Quality Control, Reagent Kits, Diagnostic, United Kingdom, Growth Substances blood, Laboratories standards
- Abstract
The performance of laboratories in the UK External Quality Assessment Scheme for growth hormone (GH) during the years 1980 to 1987 is reviewed. The number of participating laboratories has increased steadily and is at present 67; about one half use immunoradiometric assay (IRMA) kits and the use of such kits is increasing at the expense of 'in-house' radioimmunoassays (RIAs). The consensus mean, which is used as the target value for assessing performance, has remained accurate and reproducible against this changing background. The between-laboratory geometric coefficient of variation has remained at about 18% during the period reviewed, revealing unsatisfactory between-laboratory agreement. This is in part due to poor within-laboratory performance in a small proportion of laboratories but it is also due to the negative bias of some IRMA kits. Most IRMA kits do appear, however, to provide marginally better within-laboratory precision than RIA, and are less vulnerable to non-specific interference. The laboratory interpretation of results was assessed from time to time, and was generally satisfactorily performed. In an attempt to identify the causes of poor performance, a detailed survey of assay methods and laboratory practice has been carried out; the results are described in an associated report [1].
- Published
- 1988
- Full Text
- View/download PDF
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