1. Selective modulation by PARP-1 of HIF-1α-recruitment to chromatin during hypoxia is required for tumor adaptation to hypoxic conditions
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F. Javier Oliver, Ana Teresa Amaral, Françoise Dantzer, Edurne Berra, Klaudia Dziedzic, Juan Manuel Martí, Ángel García-Díaz, Ariannys González-Flores, José Manuel Rodríguez-Vargas, Onintza Carlevaris, George L. King, Ester M. Hammond, Jean-Christophe Amé, Daniel Delgado-Bellido, Francisco O'Valle, E. de Álava, Junta de Andalucía, Ministerio de Economía y Competitividad (España), Centro de Investigación Biomédica en Red Cáncer (España), Instituto de Salud Carlos III, Eusko Jaurlaritza, Fundación Domingo Martínez, Instituto de Parasitología y Biomedicina López-Neyra (IPBLN-CSIC), Consejo Superior de Investigaciones Científicas [Madrid] (CSIC), Institute of Biopathology and Regenerative Medicine (IBIMER), Universidad de Granada, El Centro de Investigación Biomédica (CIBM)-El Centro de Investigación Biomédica (CIBM), Biotechnologie et signalisation cellulaire (BSC), Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Institut de recherche de l'Ecole de biotechnologie de Strasbourg (IREBS), [Martí,JM, Garcia-Diaz,A, Delgado-Bellido,D, González-Flores,A, Oliver,FJ] Institute of Parasitology and Biomedicine López-Neyra, CSIC, and CIBERONC, Granada, Spain. [O'Valle,F] Pathology Department, School of Medicine, IBIMER, CIBM, University of Granada, Spain and Biosanitary Research Institute (IBS. GRANADA), University of Granada, Granada, Spain. [Carlevaris,O, Dziedzic,K, Berra,E] CIC BioGUNE, Parque Tecnológico de Bizkaia, Derio, Spain. [Rodríguez-Vargas,JM, Amé,JC, Dantzer,F] Poly(ADP-ribosyl)ation and Genome Integrity, Laboratoire D’Excellence Medalis, Centre National de La Recherche cientifique/Universit´e de Strasbourg, Institut de Recherche de L’Ecole de Biotechnologie de Strasbourg, Illkirch, France. [King,GL] Section of Vascular Cell Biology and Complications, Dianne Nunnally Hoppes Laboratory for Diabetes Complications, Joslin Diabetes Center, Harvard Medical School, Boston, MA, USA. [de Álava,E, Amaral,AT] Institute of Biomedicine of Sevilla (IBiS), Virgen Del Rocio University Hospital/CSIC/University of Sevilla/CIBERONC, Seville, Spain. [Hammond,EM] Oxford Institute for Radiation Oncology, Department of Oncology, University of Oxford, Oxford, UK., and This work was supported by Junta de Andalucía, project of Excel lence from Junta de Andalucía P10-CTS-0662, P12-CTS-383 to FJO, Spanish Ministry of Economy and Competitiveness SAF2012-40011- C02-01, SAF2015-70520- R, RTI2018-098968-B-I00, RTICC RD12/0036/0026 and CIBER Cáncer ISCIII CB16/12/00421 to FJO. EB1 s lab is supported by the Basque Department of Industry, Tourism and Trade (Etortek) and the MINECO (CB16/12/00421) grants. Fundación Domingo Martínez (call 2019).
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Secuenciación de inmunoprecipitación de cromatina ,0301 basic medicine ,Medicine (General) ,Clinical Biochemistry ,[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,Biochemistry ,Organisms::Eukaryota::Animals::Chordata::Vertebrates::Mammals::Primates::Haplorhini::Catarrhini::Hominidae::Humans [Medical Subject Headings] ,0302 clinical medicine ,Hipoxia ,Biology (General) ,Hypoxia ,Hypoxia-Responsive Elements ,Cell Hypoxia ,Chromatin ,3. Good health ,Diseases::Neoplasms::Neoplasms by Site::Endocrine Gland Neoplasms::Ovarian Neoplasms [Medical Subject Headings] ,ChIP-seq ,Tumor microenvironment ,Female ,medicine.symptom ,Research Paper ,Chemicals and Drugs::Heterocyclic Compounds::Heterocyclic Compounds, 2-Ring::Purines::Purine Nucleotides::Adenine Nucleotides::Adenosine Diphosphate::Adenosine Diphosphate Sugars [Medical Subject Headings] ,QH301-705.5 ,Poly ADP ribose polymerase ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,Breast Neoplasms ,PARP-1 ,Biology ,Poly(ADP-ribose) Polymerase Inhibitors ,Chemicals and Drugs::Amino Acids, Peptides, and Proteins::Proteins::Transcription Factors [Medical Subject Headings] ,03 medical and health sciences ,R5-920 ,Chemicals and Drugs::Amino Acids, Peptides, and Proteins::Proteins::Membrane Proteins::Vesicular Transport Proteins::Coat Protein Complex I::ADP-Ribosylation Factor 1 [Medical Subject Headings] ,Microambiente tumoral ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,medicine ,Humans ,Transcription factor ,Diseases::Neoplasms::Neoplasms by Site::Breast Neoplasms [Medical Subject Headings] ,Inhibidores de poli(ADP-Ribosa) polimerasas ,Anatomy::Cells::Cellular Structures::Intracellular Space::Cell Nucleus::Cell Nucleus Structures::Intranuclear Space::Chromosomes::Chromosome Structures::Chromatin [Medical Subject Headings] ,Organic Chemistry ,Cancer ,Hypoxia (medical) ,medicine.disease ,PARylation ,030104 developmental biology ,Check Tags::Female [Medical Subject Headings] ,Poli ADP ribosilación ,Cancer research ,Phenomena and Processes::Cell Physiological Phenomena::Cell Physiological Processes::Cell Respiration::Cell Hypoxia [Medical Subject Headings] ,Ovarian cancer ,030217 neurology & neurosurgery - Abstract
This work was supported by Junta de Andalucia, project of Excellence from Junta de Andalucia P10-CTS-0662, P12-CTS-383 to FJO, Spanish Ministry of Economy and Competitiveness SAF2012-40011C02-01, SAF2015-70520-R, RTI2018-098968-B-I00, RTICC RD12/0036/0026 and CIBER Cancer ISCIII CB16/12/00421 to FJO. EB1s lab is supported by the Basque Department of Industry, Tourism and Trade (Etortek) and the MINECO (CB16/12/00421) grants. Fundacion Domingo Martinez (call 2019)., We would like to acknowledge Laura L´opez for technical assistance; Eduardo Andr´es and Laura Terr´on (Bioinformatic core IPBLN, CSIC) and Pan Hui (Bioinformatic Core, Joslin Diabetes center, Harvard Medical School)., Background: The adaptation to hypoxia is mainly controlled by the HIF transcription factors. Increased expression/ activity of HIF-1α correlates with poor prognosis in cancer patients. PARP-1 inhibitors are used in the clinic to treat BRCAness breast/ovarian cancer and have been shown to regulate the hypoxic response; therefore, their use could be expanded. Methods: In this work by integrating molecular/cell biology approaches, genome-wide ChIP-seq, and patient samples, we elucidate the extent to which PARP-1 exerts control over HIF-1-regulated genes. Results: In human melanoma, PARP-1 and HIF-1α expression are strongly associated. In response to a hypoxic challenge poly(ADP-ribose) (PAR) is synthesized, HIF-1α is post-transcriptionally modified (PTM) and stabilized by PARylation at specific K/R residues located at its C-terminus. Using an unbiased ChIP-seq approach we demonstrate that PARP-1 dictates hypoxia-dependent HIF-recruitment to chromatin in a range of HIF-regulated genes while analysis of HIF-binding motifs (RCGTG) reveals a restriction on the recognition of hypoxia responsive elements in the absence of PARP-1. Consequently, the cells are poorly adapted to hypoxia, showing a reduced fitness during hypoxic induction. Conclusions: These data characterize the fine-tuning regulation by PARP-1/PARylation of HIF activation and suggest that PARP inhibitors might have therapeutic potential against cancer types displaying HIF-1α overactivation., Junta de Andalucia P10-CTS-0662 P12-CTS-38, Spanish Ministry of Economy and Competitiveness SAF2012-40011-C02-01 SAF2015-70520- R RTI2018-098968-B-I00 RTICC RD12/0036/0026, CIBER Cancer ISCIII CB16/12/00421, Basque Department of Industry, Tourism and Trade (Etortek), MINECO CB16/12/00421, Fundacion Domingo Martinez
- Published
- 2021
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