44 results on '"Costa, Daniel B."'
Search Results
2. Association of Extended Dosing Intervals or Delays in Pembrolizumab-based Regimens With Survival Outcomes in Advanced Non-small-cell Lung Cancer.
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Sehgal K, Bulumulle A, Brody H, Gill RR, Macherla S, Qilleri A, McDonald DC, Cherry CR, Shea M, Huberman MS, VanderLaan PA, Weiss GJ, Walker PR, Costa DB, and Rangachari D
- Subjects
- Adult, Aged, Aged, 80 and over, Carcinoma, Non-Small-Cell Lung pathology, Cohort Studies, Drug Administration Schedule, Female, Humans, Lung Neoplasms pathology, Male, Middle Aged, Progression-Free Survival, Retrospective Studies, Survival Rate, Time Factors, Treatment Outcome, Antibodies, Monoclonal, Humanized administration & dosage, Antineoplastic Agents, Immunological administration & dosage, Carcinoma, Non-Small-Cell Lung drug therapy, Lung Neoplasms drug therapy
- Abstract
Background: Besides modeling/simulation-based analysis, no post-approval studies have evaluated the optimal administration frequency of pembrolizumab in non-small-cell lung cancer (NSCLC)., Patients and Methods: We performed a multicenter retrospective cohort study to evaluate the association between survival outcomes and treatment extensions/delays of pembrolizumab-based regimens in patients with advanced NSCLC. Those who had received at least 4 cycles in routine practice were divided into 2 groups: nonstandard (Non-Std, ≥ 2 cycles at intervals > 3 weeks + 3 days) and standard (Std, all cycles every 3 weeks or 1 cycle > 3 weeks + 3 days)., Results: Among 150 patients, 92 (61%) were eligible for the study (Non-Std, 27; Std, 65). The reasons for patients with extensions/delays in the Non-Std group included: immune-related adverse events (irAEs) (33%), non-irAE-related medical issues (26%), and patient-physician preference (41%). The Non-Std group was more likely to have a higher programmed death-ligand 1 tumor proportion score, a higher number of treatment cycles, and pembrolizumab monotherapy. Univariate and 6-month landmark analyses showed longer median overall survival and progression-free survival in the Non-Std group compared with the Std group. After multivariable adjustment for confounding factors, there was no significant difference in overall survival (hazard ratio, 1.2; 95% confidence interval, 0.3-4.8; P = .824) or progression-free survival (hazard ratio, 2.6; 95% confidence interval, 0.7-9.6; P = .157) between the 2 groups., Conclusion: Our study shows that a significant proportion of patients with advanced NSCLC receive pembrolizumab-based regimens with extended intervals or delays in routine clinical practice and with similar outcomes to those receiving treatment at label-specified 3-week intervals. Given the durability of benefit seen and the potential for cost reduction and decreased infusion frequency in these patients, this requires validation in prospective trials., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2021
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3. Extensive-Stage Small-Cell Lung Cancer With Sustained Complete Response to Single-Agent Nivolumab and Immune-Related Dermatitis.
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Widick P, Gill RR, Mantia C, Costa DB, and Rangachari D
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- Antineoplastic Agents, Immunological administration & dosage, Antineoplastic Agents, Immunological adverse effects, Dermatitis etiology, Drug-Related Side Effects and Adverse Reactions etiology, Female, Humans, Lung Neoplasms immunology, Lung Neoplasms pathology, Middle Aged, Neoplasm Staging, Nivolumab adverse effects, Programmed Cell Death 1 Receptor immunology, Small Cell Lung Carcinoma immunology, Small Cell Lung Carcinoma pathology, Treatment Outcome, Dermatitis pathology, Drug-Related Side Effects and Adverse Reactions pathology, Lung Neoplasms drug therapy, Nivolumab administration & dosage, Programmed Cell Death 1 Receptor antagonists & inhibitors, Small Cell Lung Carcinoma drug therapy
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- 2020
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4. EGFR-Mutated Lung Cancers Resistant to Osimertinib through EGFR C797S Respond to First-Generation Reversible EGFR Inhibitors but Eventually Acquire EGFR T790M/C797S in Preclinical Models and Clinical Samples.
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Rangachari D, To C, Shpilsky JE, VanderLaan PA, Kobayashi SS, Mushajiang M, Lau CJ, Paweletz CP, Oxnard GR, Jänne PA, and Costa DB
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- Acrylamides administration & dosage, Alkylating Agents pharmacology, Aniline Compounds administration & dosage, Animals, Carcinoma, Non-Small-Cell Lung pathology, Cells, Cultured, Drug Resistance, Neoplasm, ErbB Receptors antagonists & inhibitors, ErbB Receptors genetics, ErbB Receptors metabolism, Erlotinib Hydrochloride administration & dosage, Ethylnitrosourea pharmacology, Female, Gefitinib administration & dosage, Humans, Lung Neoplasms pathology, Mice, Middle Aged, Mutagenesis, Mutation, Precursor Cells, B-Lymphoid drug effects, Precursor Cells, B-Lymphoid metabolism, Precursor Cells, B-Lymphoid pathology, Protein Kinase Inhibitors administration & dosage, Retrospective Studies, Treatment Outcome, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Carcinoma, Non-Small-Cell Lung drug therapy, Carcinoma, Non-Small-Cell Lung genetics, Lung Neoplasms drug therapy, Lung Neoplasms genetics
- Abstract
Introduction: Osimertinib is approved for advanced EGFR-mutated NSCLC, and identification of on-target mechanisms of resistance (i.e., EGFR C797S) to this third-generation EGFR inhibitor are evolving. Whether durable control of subsequently osimertinib-resistant NSCLC with the EGFR-sensitizing mutation (SM)/C797S is possible with first-generation EGFR inhibitors (such as gefitinib or erlotinib) remains underreported, as does the resultant acquired resistance profile., Methods: We used N-ethyl-N-nitrosourea mutagenesis to determine the profile of EGFR SM/C797S preclinical models exposed to reversible EGFR inhibitors. In addition, we retrospectively probed a case of EGFR SM lung adenocarcinoma treated with first-line osimertinib, followed by second-line erlotinib in the setting of EGFR SM/C797S., Results: Use of N-ethyl-N-nitrosourea mutagenesis against the background of EGFR L858R/C797S in conjunction with administration of gefitinib revealed preferential outgrowth of cells with EGFR L858R/T790M/C797S. A patient with EGFR delE746_T751insV NSCLC was treated with osimertinib with sustained response for 10 months before acquiring EGFR C797S. The patient was subsequently treated with erlotinib, with response for a period of 4 months, but disease progression ensued. Liquid biopsy disclosed EGFR delE746_T751insV with T790M and C797S present in cis., Conclusion: EGFR SM NSCLC can acquire resistance to osimertinib through development of the EGFR C797S mutation. In this clinical scenario, the tumor may respond transiently to reversible first-generation EGFR inhibitors (gefitinib or erlotinib), but evolving mechanisms of on-target resistance-in clinical specimens and preclinical systems-indicate that EGFR C797S along with EGFR T790M can evolve. This report adds to the growing understanding of tumor evolution or adaptability to sequential EGFR inhibition and augments support for exploring combination therapies to delay or prevent on-target resistance., (Copyright © 2019 International Association for the Study of Lung Cancer. Published by Elsevier Inc. All rights reserved.)
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- 2019
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5. Complete and Sustained Response of Brain Metastases to Programmed Death 1 Antibody Monotherapy in Treatment-naive Programmed Death Ligand 1-Positive Lung Cancer.
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Varkaris A, Sehgal K, Rangachari D, and Costa DB
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- Aged, B7-H1 Antigen metabolism, Brain Neoplasms secondary, Carcinoma, Non-Small-Cell Lung metabolism, Carcinoma, Non-Small-Cell Lung secondary, Humans, Lung Neoplasms metabolism, Lung Neoplasms pathology, Male, Antibodies, Monoclonal, Humanized therapeutic use, Antineoplastic Agents, Immunological therapeutic use, Brain Neoplasms drug therapy, Carcinoma, Non-Small-Cell Lung drug therapy, Lung Neoplasms drug therapy
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- 2019
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6. Activity of Brigatinib in the Setting of Alectinib Resistance Mediated by ALK I1171S in ALK-Rearranged Lung Cancer.
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Sehgal K, Peters MLB, VanderLaan PA, Rangachari D, Kobayashi SS, and Costa DB
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- Carbazoles pharmacology, Female, Humans, Lung Neoplasms pathology, Middle Aged, Organophosphorus Compounds pharmacology, Piperidines pharmacology, Protein Kinase Inhibitors pharmacology, Pyrimidines pharmacology, Carbazoles therapeutic use, Lung Neoplasms drug therapy, Organophosphorus Compounds therapeutic use, Piperidines therapeutic use, Protein Kinase Inhibitors therapeutic use, Pyrimidines therapeutic use
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- 2019
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7. Authors' Response.
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Cheng MP, Marty FM, Costa DB, and Awad MM
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- Algorithms, HIV, Humans, Carcinoma, Non-Small-Cell Lung, Lung Neoplasms
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- 2018
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8. Molecular Testing Turnaround Time in Non-Small-Cell Lung Cancer: Monitoring a Moving Target.
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VanderLaan PA, Chen Y, DiStasio M, Rangachari D, Costa DB, and Heher YK
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- Carcinoma, Non-Small-Cell Lung drug therapy, Carcinoma, Non-Small-Cell Lung genetics, DNA Mutational Analysis, Humans, Lung Neoplasms drug therapy, Lung Neoplasms genetics, Prognosis, Time-to-Treatment, Watchful Waiting, Biomarkers, Tumor genetics, Carcinoma, Non-Small-Cell Lung diagnosis, Lung Neoplasms diagnosis, Molecular Diagnostic Techniques standards, Molecular Targeted Therapy standards, Mutation
- Published
- 2018
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9. Safety and Efficacy of PD-1 Inhibitors Among HIV-Positive Patients With Non-Small Cell Lung Cancer.
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Ostios-Garcia L, Faig J, Leonardi GC, Adeni AE, Subegdjo SJ, Lydon CA, Rangachari D, Huberman MS, Sehgal K, Shea M, VanderLaan PA, Cheng MP, Marty FM, Hammond SP, Costa DB, and Awad MM
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- Adult, Antibodies, Monoclonal, Humanized administration & dosage, Carcinoma, Non-Small-Cell Lung complications, Carcinoma, Non-Small-Cell Lung virology, Female, Follow-Up Studies, HIV Infections complications, HIV Infections virology, Humans, Lung Neoplasms complications, Lung Neoplasms virology, Male, Middle Aged, Nivolumab administration & dosage, Prognosis, Retrospective Studies, Survival Rate, Antineoplastic Combined Chemotherapy Protocols therapeutic use, B7-H1 Antigen antagonists & inhibitors, Carcinoma, Non-Small-Cell Lung drug therapy, HIV drug effects, HIV Infections drug therapy, Lung Neoplasms drug therapy
- Abstract
Introduction: Despite widespread administration of programmed death receptor 1 (PD-1) pathway inhibitors among individuals with NSCLC, little is known about the safety and activity of these agents among human immunodeficiency virus (HIV) - infected patients since this population has largely been excluded from immunotherapy clinical trials., Methods: Here, we describe seven patients with metastatic NSCLC and HIV infection who were treated with PD-1 inhibitors nivolumab (two cases) or pembrolizumab (five cases with three in the first-line setting)., Results: Partial responses to immune checkpoint inhibitors were observed in three of seven cases. Among four patients with a programmed death ligand-1 tumor proportion score ≥50%, three partial responses were observed. All patients received antiretroviral therapy while on anti-PD-1 treatment. None of the patients experienced grade 3 or 4 immune-related adverse events or immune reconstitution inflammatory syndrome, and none required PD-1 inhibitor dose interruption or discontinuation due to toxicity., Conclusions: Nivolumab and pembrolizumab can be safe and effective among patients with NSCLC and HIV. Larger studies will be needed to determine the overall safety and efficacy of immune checkpoint inhibitors among cancer patients with HIV., (Copyright © 2018 International Association for the Study of Lung Cancer. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
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10. Updated Correlation of 22C3-PD-L1 ≥50% Expression with Driver Oncogene Mutations and Response to Pembrolizumab in the Kinase Inhibitor-Resistant Setting.
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Rangachari D, VanderLaan PA, and Costa DB
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- Antibodies, Monoclonal, Humanized, B7-H1 Antigen, ErbB Receptors, Humans, Mutation, Adenocarcinoma of Lung, Lung Neoplasms
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- 2018
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11. PD-L1 testing using the clone 22C3 pharmDx kit for selection of patients with non-small cell lung cancer to receive immune checkpoint inhibitor therapy: are cytology cell blocks a viable option?
- Author
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Torous VF, Rangachari D, Gallant BP, Shea M, Costa DB, and VanderLaan PA
- Abstract
Introduction: Programmed death ligand 1 (PD-L1) testing of non-small cell lung cancer (NSCLC) specimens helps select patients most likely to respond to immune checkpoint inhibitors. PD-L1 immunohistochemical testing is approved for formalin-fixed, paraffin-embedded (FFPE) surgical pathology specimens; however, the testing performance on FFPE cytology cell block specimens is unknown., Materials and Methods: The study is a retrospective cohort analysis of advanced stage NSCLC patients treated at our institution where tumor PD-L1 expression using the clone 22C3 pharmDx kit on the Dako Automated Link 48 platform was performed on either cytology cell block or surgical pathology specimens. Concomitant tumor mutation biomarkers were also collected, as well as tumor clinicopathologic characteristics and clinical outcome data following pembrolizumab treatment., Results: 232 patient tumor specimens were tested for PD-L1 expression (94 on cytology cell block and 138 on surgical pathology specimens). No significant differences in PD-L1 tumor proportion score (TPS) were observed between cytology and surgical pathology groups, with both patient cohorts containing ~35% of tumors showing TPS ≥50%. Although few in number, patients with PD-L1 TPS ≥50% based on cytology vs. surgical pathology who received treatment with pembrolizumab demonstrated similar response and disease control rates., Conclusions: In this cohort of advanced NSCLC patients with standard of care PD-L1 testing performed on either FFPE cytology cell blocks or FFPE surgical pathology specimens, similar patterns were observed in population tumor PD-L1 expression patterns, concomitant driver mutations, and clinical response to palliative pembrolizumab in selected patients with TPS ≥50%., Competing Interests: Conflict of interest: DBC has received consulting fees and honoraria from Pfizer, Boehringer Ingelheim and Ariad pharmaceuticals; outside the submitted work. PVL has received consulting fees from Gala Therapeutics; outside the submitted work. No other conflict of interest is stated.
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- 2018
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12. Radiologic and autopsy findings in a case of fatal immune checkpoint inhibitor-associated pneumonitis.
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Shea M, Rangachari D, Hallowell RW, Hollie NI, Costa DB, and VanderLaan PA
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- Adenocarcinoma pathology, Aged, Antibodies, Monoclonal, Humanized therapeutic use, Antineoplastic Agents, Immunological therapeutic use, Autopsy, Fatal Outcome, Humans, Lung Neoplasms pathology, Male, Programmed Cell Death 1 Receptor genetics, Programmed Cell Death 1 Receptor metabolism, Respiratory Distress Syndrome pathology, Tomography, X-Ray Computed, Adenocarcinoma drug therapy, Antibodies, Monoclonal, Humanized adverse effects, Antineoplastic Agents, Immunological adverse effects, Lung Neoplasms drug therapy, Pneumonia immunology, Pneumonia pathology
- Abstract
Oncologists are increasingly managing drug-induced pneumonitis in lung cancer patients treated with PD-1/PD-L1 immune checkpoint inhibitors. To date only few studies on the topic have described both radiologic and pathologic findings in these patients. Here, we report a fatal case of immune checkpoint inhibitor-associated pneumonitis initially presenting with an organizing pneumonia, but who rapidly developed acute respiratory distress syndrome (confirmed histologically at the time of autopsy). As such, this case illustrates the need for clinicians to maintain a high index of suspicion for immune checkpoint inhibitor associated pneumonitis and have a low threshold to perform CT imaging in any symptomatic patient receiving checkpoint inhibition therapy. CLINICAL PRACTICE POINTS., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
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- 2018
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13. Cases of ALK-Rearranged Lung Cancer with 5-Year Progression-Free Survival with Crizotinib as Initial Precision Therapy.
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Rangachari D, Le X, Shea M, Huberman MS, VanderLaan PA, Kobayashi SS, and Costa DB
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- Aged, Anaplastic Lymphoma Kinase, Crizotinib, Disease-Free Survival, Female, Gene Rearrangement, Humans, Lung Neoplasms enzymology, Lung Neoplasms genetics, Lung Neoplasms pathology, Precision Medicine, Receptor Protein-Tyrosine Kinases metabolism, Survival Rate, Lung Neoplasms drug therapy, Protein Kinase Inhibitors therapeutic use, Pyrazoles therapeutic use, Pyridines therapeutic use, Receptor Protein-Tyrosine Kinases genetics
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- 2017
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14. Molecular Testing Turnaround Time for Non-Small Cell Lung Cancer in Routine Clinical Practice Confirms Feasibility of CAP/IASLC/AMP Guideline Recommendations: A Single-center Analysis.
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DiStasio M, Chen Y, Rangachari D, Costa DB, Heher YK, and VanderLaan PA
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- Anaplastic Lymphoma Kinase, DNA Mutational Analysis, ErbB Receptors genetics, Feasibility Studies, Female, Genetic Testing standards, Humans, In Situ Hybridization, Fluorescence, Male, Molecular Targeted Therapy, Practice Guidelines as Topic, Protein-Tyrosine Kinases genetics, Proto-Oncogene Proteins genetics, Proto-Oncogene Proteins p21(ras) genetics, Receptor Protein-Tyrosine Kinases genetics, Retrospective Studies, Specimen Handling standards, Time Factors, Workflow, Carcinoma, Non-Small-Cell Lung genetics, DNA, Neoplasm analysis, Genetic Testing statistics & numerical data, Lung Neoplasms genetics, Specimen Handling statistics & numerical data
- Abstract
Introduction: Molecular testing to identify targetable driver mutations is the standard of care for patients with advanced-stage non-small cell lung cancer. Recent guideline recommendations by the College of American Pathologists (CAP), International Association for the Study of Lung Cancer (IASLC), and Association for Molecular Pathology (AMP) established a benchmark turnaround time (TAT) target of 10 working days for results to be available to the treating oncologist and ≤ 3 days for specimens to arrive at a commercial testing laboratory if testing is not performed in-house., Methods and Materials: To provide insights regarding the pre-testing, post-testing, and testing intervals that constitute the overall TAT target, we performed a detailed workflow analysis. A total of 157 lung cancer specimens were sent out for molecular testing at a commercial vendor from a single academic medical center during the calendar year 2015., Results: Overall, 128 specimens (81.5%) met the recommended 10-working day TAT, with a median total TAT of 9 weekdays (mean ± standard deviation, 9.17 ± 4.15 days). The pre-testing interval was ≤ 3 days for 146 specimens (93.0%), and the post-testing reporting interval was < 1 day for 116 cases (73.9%). The TAT variance was not related to intrinsic specimen characteristics., Conclusion: Overall, the findings indicated that the CAP/IASLC/AMP TAT guideline recommendations are feasible for most lung cancer specimens when a streamlined system is in place., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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15. Scientific Advances in Thoracic Oncology 2016.
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Soo RA, Stone ECA, Cummings KM, Jett JR, Field JK, Groen HJM, Mulshine JL, Yatabe Y, Bubendorf L, Dacic S, Rami-Porta R, Detterbeck FC, Lim E, Asamura H, Donington J, Wakelee HA, Wu YL, Higgins K, Senan S, Solomon B, Kim DW, Johnson M, Yang JCH, Sequist LV, Shaw AT, Ahn MJ, Costa DB, Patel JD, Horn L, Gettinger S, Peters S, Wynes MW, Faivre-Finn C, Rudin CM, Tsao A, Baas P, Kelly RJ, Leighl NB, Scagliotti GV, Gandara DR, Hirsch FR, and Spigel DR
- Subjects
- History, 21st Century, Humans, Thoracic Neoplasms
- Abstract
Lung cancer care is rapidly changing with advances in genomic testing, the development of next-generation targeted kinase inhibitors, and the continued broad study of immunotherapy in new settings and potential combinations. The International Association for the Study of Lung Cancer and the Journal of Thoracic Oncology publish this annual update to help readers keep pace with these important developments. Experts in thoracic cancer and care provide focused updates across multiple areas, including prevention and early detection, molecular diagnostics, pathology and staging, surgery, adjuvant therapy, radiotherapy, molecular targeted therapy, and immunotherapy for NSCLC, SCLC, and mesothelioma. Quality and value of care and perspectives on the future of lung cancer research and treatment have also been included in this concise review., (Copyright © 2017 International Association for the Study of Lung Cancer. Published by Elsevier Inc. All rights reserved.)
- Published
- 2017
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16. Lung Adenocarcinoma Manifesting as Pure Ground-Glass Nodules: Correlating CT Size, Volume, Density, and Roundness with Histopathologic Invasion and Size.
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Heidinger BH, Anderson KR, Nemec U, Costa DB, Gangadharan SP, VanderLaan PA, and Bankier AA
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- Adenocarcinoma of Lung, Aged, Humans, Male, Adenocarcinoma pathology, Lung Neoplasms pathology, Tomography, X-Ray Computed methods
- Abstract
Objectives: The aims of this study were to quantify the relationship between computed tomography (CT) size, volume, density, and roundness of lung adenocarcinomas (ACs) manifesting as pure ground-glass nodules (pGGNs) on CT images and to correlate these parameters with histologic features of invasiveness., Methods: From 2005 to 2015, 63 ACs manifesting as pGGNs on CT images were surgically resected at our institution. CT size was measured, and roundness, volumes and densities were computed. CT parameters were correlated to age and sex, as well as to size and number of invasive foci and histologic AC subcategories. Correlations were quantified with Spearman rank correlation coefficients., Results: Of 63 ACs, 28 (44%) were AC in situ, 25 (40%) were minimally invasive AC, and 10 (16%) were invasive AC. Six of 35 nodules with invasive foci (17%) were smaller than 10 mm. Correlations between age and CT size, volume, density, and roundness were not significant (range r = -0.061 to 0.144, p = 0.285 to 0.902). Correlations between size and number of invasive foci with CT size (r = 0.417, p < 0.001 and r = 0.389, p = 0.003, respectively) were similar to the correlations with volume (r = 0.401, p = 0.001 and r = 0.350, p = 0.005, respectively) and stronger than the correlation with density (r = 0.237, p = 0.062 and r = 0.222, p = 0.081, respectively) and roundness (r = 0.059, p = 0.648 and r = -0.030, p = 0.831, respectively)., Conclusions: In ACs manifesting as pGGNs on CT images, nodule size is positively related to size and number of histologically invasive foci. However, invasive foci can be found in pGGNs smaller than 10 mm. Measuring volume and density of pGGNs provides no advantage over two-dimensional size measurements, which appear sufficient for risk estimation in clinical practice., (Copyright © 2017 International Association for the Study of Lung Cancer. Published by Elsevier Inc. All rights reserved.)
- Published
- 2017
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17. Correlation between Classic Driver Oncogene Mutations in EGFR, ALK, or ROS1 and 22C3-PD-L1 ≥50% Expression in Lung Adenocarcinoma.
- Author
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Rangachari D, VanderLaan PA, Shea M, Le X, Huberman MS, Kobayashi SS, and Costa DB
- Subjects
- Adenocarcinoma metabolism, Anaplastic Lymphoma Kinase, B7-H1 Antigen metabolism, Biomarkers, Tumor genetics, Biomarkers, Tumor metabolism, Female, Humans, Immunohistochemistry, In Situ Hybridization, Fluorescence, Lung Neoplasms metabolism, Male, Reagent Kits, Diagnostic, Retrospective Studies, Smoking metabolism, Adenocarcinoma genetics, B7-H1 Antigen genetics, Genes, erbB-1, Lung Neoplasms genetics, Protein-Tyrosine Kinases genetics, Proto-Oncogene Proteins genetics, Receptor Protein-Tyrosine Kinases genetics
- Abstract
Introduction: Targeted somatic genomic analysis (EGFR, anaplastic lymphoma receptor tyrosine kinase gene [ALK], and ROS1) and programmed death ligand 1 (PD-L1) tumor proportion score (TPS) determined by immunohistochemistry (IHC) are used for selection of first-line therapies in advanced lung cancer; however, the frequency of overlap of these biomarkers in routine clinical practice is poorly reported., Methods: We retrospectively probed the first 71 pairs of patients with lung adenocarcinoma from our institution. They were analyzed for PD-L1 by IHC using the clone 22C3 pharmDx kit (Agilent Technologies, Santa Clara, CA) and evaluated for co-occurrence of genomic aberrations and clinicopathologic characteristics., Results: Surgical resection specimens, small biopsy (transbronchial or core needle) samples, and cytologic cell blocks (needle aspirates or pleural fluid) were tested. A PD-L1 TPS of at least ≥50% was seen in 29.6% of tumors. Of 19 tumors with EGFR mutations, ALK fluorescence in situ hybridization positivity, or ROS1 fluorescence in situ hybridization positivity, 18 had a PD-L1 TPS less than 50% versus only one tumor with a PD-L1 TPS of at least 50% (p = 0.0073). Tumors with a PD-L1 TPS of at least 50% were significantly associated with smoking status compared with tumors with a PD-L1 TPS less than 50% but were not associated with patient sex, ethnicity, tumor stage, biopsy site, or biopsy type/preparation., Conclusions: PD-L1 IHC can be performed on routine clinical lung cancer specimens. A TPS of at least 50% seldom overlaps with presence of driver oncogenes with approved targeted therapies. Three biomarker-specified groups of advanced lung adenocarcinomas can now be defined, each paired with a specific palliative first-line systemic therapy of proven clinical benefit: (1) EGFR/ALK/ROS1-affected adenocarcinoma paired with a matched tyrosine kinase inhibitor (∼20% of cases), (2) PD-L1-enriched adenocarcinoma (TPS ≥50%) paired with anti-PD-1 pembrolizumab (∼30% of cases), and (3) biomarker-negative (i.e., EGFR/ALK/ROS1/PD-L1-negative) adenocarcinoma paired with platinum doublet chemotherapy with or without bevacizumab (∼50% of cases)., (Copyright © 2017 International Association for the Study of Lung Cancer. Published by Elsevier Inc. All rights reserved.)
- Published
- 2017
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18. Compound Uncommon EGFR Mutations in a Patient with Advanced NSCLC and Durable Response to Sequential EGFR Targeted Therapies.
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Peters MLB, Costa DB, and Rangachari D
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- ErbB Receptors genetics, Humans, Mutation, Carcinoma, Non-Small-Cell Lung genetics, Lung Neoplasms genetics
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- 2017
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19. EGFR Testing in Advanced Non-Small-Cell Lung Cancer, A Mini-Review.
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Sheikine Y, Rangachari D, McDonald DC, Huberman MS, Folch ES, VanderLaan PA, and Costa DB
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- Carcinoma, Non-Small-Cell Lung genetics, Humans, Lung Neoplasms genetics, Molecular Targeted Therapy, Precision Medicine, Predictive Value of Tests, Antineoplastic Agents therapeutic use, Carcinoma, Non-Small-Cell Lung drug therapy, ErbB Receptors genetics, Lung Neoplasms drug therapy, Mutation genetics
- Abstract
Expert consensus guidelines have defined minimum requirements for routine testing and identification of classical epidermal growth factor (EGFR) mutations (ie, exon 19 deletions and exon 21 L858R substitution) and anaplastic lymphoma kinase (ALK) rearrangements in advanced non-small-cell lung cancers of adenocarcinoma histology, with the intent of permitting use of these predictive biomarkers to select patients who will derive maximal benefit from approved oral tyrosine kinase inhibitors (TKIs) directed against EGFR and ALK, respectively. However, the practice of precision medicine is incumbent upon optimal tumor sampling, accurate tumor testing, and informed application of results to patient care. We report on a brief review of EGFR testing methodologies (Sanger sequencing, allele-specific polymerase chain reaction, and targeted next-generation sequencing) to identify classical and other (ie, exon 18 G719X, exon 19 insertions, exon 20 insertions, exon 21 L861Q) EGFR mutations; practical considerations (type of tissue/biopsies with different success rates of DNA isolation, and timeliness of result-reporting to facilitate therapeutic decision-making); role of rebiopsy (to identify mechanisms of acquired resistance to first- and second-generation EGFR TKIs, most importantly EGFR-T790M); and clinical vignettes highlighting the nuances of testing in day-to-day practice., (Copyright © 2016 Elsevier Inc. All rights reserved.)
- Published
- 2016
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20. Comprehensive Genomic Profiling Differentiates Metachronous Primary Small-Cell Lung Cancer From Late Recurrence.
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Gao X, VanderLaan PA, Bailey AS, and Costa DB
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- Aged, Antineoplastic Agents therapeutic use, Diagnosis, Differential, Female, Humans, Lung Neoplasms diagnosis, Neoplasm Recurrence, Local diagnosis, Neoplasms, Second Primary diagnosis, Small Cell Lung Carcinoma diagnosis, Tomography, X-Ray Computed, High-Throughput Nucleotide Sequencing methods, Lung Neoplasms genetics, Neoplasm Recurrence, Local genetics, Neoplasms, Second Primary genetics, Small Cell Lung Carcinoma genetics
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- 2016
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21. Lazarus-Type Response to Crizotinib in a Patient with Poor Performance Status and Advanced MET Exon 14 Skipping Mutation-Positive Lung Adenocarcinoma.
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Shea M, Huberman MS, and Costa DB
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- Adenocarcinoma drug therapy, Adenocarcinoma genetics, Aged, Crizotinib, Female, Humans, Lung Neoplasms drug therapy, Lung Neoplasms genetics, Prognosis, Protein Kinase Inhibitors therapeutic use, Adenocarcinoma pathology, Exons, Lung Neoplasms pathology, Mutation, Proto-Oncogene Proteins c-met genetics, Pyrazoles therapeutic use, Pyridines therapeutic use
- Published
- 2016
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22. Pulse Afatinib for ERBB2 Exon 20 Insertion-Mutated Lung Adenocarcinomas.
- Author
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Costa DB, Jorge SE, Moran JP, Freed JA, Zerillo JA, Huberman MS, and Kobayashi SS
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- Adenocarcinoma genetics, Adenocarcinoma pathology, Afatinib, Aged, Female, Follow-Up Studies, Humans, Lung Neoplasms genetics, Lung Neoplasms pathology, Male, Neoplasm Staging, Prognosis, Radiation-Sensitizing Agents therapeutic use, Retrospective Studies, Survival Rate, Tumor Cells, Cultured, Adenocarcinoma drug therapy, Lung Neoplasms drug therapy, Mutagenesis, Insertional, Quinazolines therapeutic use, Receptor, ErbB-2 genetics
- Abstract
Introduction: Genomic aberrations involving the erb-b2 receptor tyrosine kinase 2 gene (ERBB2) are driver oncogenes in approximately 2% of lung adenocarcinomas. However, the use of daily dosing of ERBB2 tyrosine kinase inhibitors (TKIs)-including afatinib-has been fraught with plasma concentrations that barely achieve preclinical model inhibition, significant patient-reported toxicities, and limited clinical activity. We hypothesized that alternative dosing strategies could improve tolerability and efficacy., Methods: We profiled lung cancer cell lines against TKIs and retrospectively evaluated the toxicity of and response to pulse afatinib (280 mg once weekly) in lung cancers with ERBB2 mutations., Results: An ERBB2 exon 20 insertion-mutated lung cancer cell line had a 50% inhibitory concentration in response to afatinib that was higher than the reported plasma concentration of afatinib, 40 mg daily. Three patients with advanced ERBB2-mutated lung adenocarcinomas were treated with off-label pulse afatinib. The 280-mg weekly dose was well tolerated with no reported rash and minimal diarrhea. One TKI-naive patient achieved a partial response for 5 months and another achieved stable disease for 11 months., Conclusions: Pulse afatinib at a weekly dosing scheme induced antitumor activity in ERBB2 exon 20 insertion-mutated lung adenocarcinomas. Future clinical trials of alternative dosing schemes of ERBB TKIs as monotherapy or in combination with other therapies are warranted for ERBB2-mutated tumors., (Copyright © 2016 International Association for the Study of Lung Cancer. Published by Elsevier Inc. All rights reserved.)
- Published
- 2016
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23. Rapidly fatal advanced EGFR -mutated lung cancers and the need for rapid tumor genotyping in clinical practice.
- Author
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Rangachari D, Drake L, Huberman MS, McDonald DC, VanderLaan PA, Folch E, and Costa DB
- Abstract
Use of epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) is associated with dramatic, durable, and tolerable responses and side effect profiles when applied for palliation of advanced EGFR -mutated non-small-cell lung cancers (NSCLCs). Expert guidelines recommend that EGFR mutation testing results should be available within 10 working days of receipt of tumor specimen by the testing laboratory; in circumstances where the tumor specimen needs to be sent to an external laboratory for testing, the sample should be sent within 3 working days of receiving the request for testing. We report here 2 cases, out of 109 EGFR- mutated (exon 19 deletion or L858R) NSCLCs seen at our institution, experiencing rapid clinical deterioration and death within the window of time prescribed by consensus testing guidelines. We hypothesize that a faster turn-around time may have changed the clinical outcome. Improving rapid turnaround times for tumor genotyping may afford more optimal palliation vis-à-vis early initiation of oral targeted therapy in patients with advanced EGFR -mutated NSCLC., Competing Interests: Daniel B. Costa has received consulting fees and honoraria from Pfizer (unrelated to the current work), and honoraria from Boehringer Ingelheim (unrelated to the current work). EF has served as scientific consultant for Boston Scientific (unrelated to the current work), education consultant for Olympus (unrelated to the current work) and is the principal investigator for an ongoing trial in navigation bronchoscopy funded by Medtronic (unrelated to the current work). No other conflict of interest is stated.
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- 2016
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24. Durable Clinical Response to Entrectinib in NTRK1-Rearranged Non-Small Cell Lung Cancer.
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Farago AF, Le LP, Zheng Z, Muzikansky A, Drilon A, Patel M, Bauer TM, Liu SV, Ou SH, Jackman D, Costa DB, Multani PS, Li GG, Hornby Z, Chow-Maneval E, Luo D, Lim JE, Iafrate AJ, and Shaw AT
- Subjects
- Carcinoma, Non-Small-Cell Lung enzymology, Carcinoma, Non-Small-Cell Lung genetics, Clinical Trials, Phase I as Topic, Cohort Studies, Female, Gene Rearrangement, Humans, Lung Neoplasms enzymology, Lung Neoplasms genetics, Male, Middle Aged, Protein Kinase Inhibitors therapeutic use, Benzamides therapeutic use, Carcinoma, Non-Small-Cell Lung drug therapy, Indazoles therapeutic use, Lung Neoplasms drug therapy, Receptor, trkA genetics
- Abstract
Introduction: Chromosomal rearrangements involving neurotrophic tyrosine kinase 1 (NTRK1) occur in a subset of non-small cell lung cancers (NSCLCs) and other solid tumor malignancies, leading to expression of an oncogenic TrkA fusion protein. Entrectinib (RXDX-101) is an orally available tyrosine kinase inhibitor, including TrkA. We sought to determine the frequency of NTRK1 rearrangements in NSCLC and to assess the clinical activity of entrectinib., Methods: We screened 1378 cases of NSCLC using anchored multiplex polymerase chain reaction (AMP). A patient with an NTRK1 gene rearrangement was enrolled onto a Phase 1 dose escalation study of entrectinib in adult patients with locally advanced or metastatic tumors (NCT02097810). We assessed safety and response to treatment., Results: We identified NTRK1 gene rearrangements at a frequency of 0.1% in this cohort. A patient with stage IV lung adenocrcinoma with an SQSTM1-NTRK1 fusion transcript expression was treated with entrectinib. Entrectinib was well tolerated, with no grade 3-4 adverse events. Within three weeks of starting on treatment, the patient reported resolution of prior dyspnea and pain. Restaging CT scans demonstrated a RECIST partial response (PR) and complete resolution of all brain metastases. This patient has continued on treatment for over 6 months with an ongoing PR., Conclusions: Entrectinib demonstrated significant anti-tumor activity in a patient with NSCLC harboring an SQSTM1-NTRK1 gene rearrangement, indicating that entrectinib may be an effective therapy for tumors with NTRK gene rearrangements, including those with central nervous system metastases.
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- 2015
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25. The Clinical Use of Genomic Profiling to Distinguish Intrapulmonary Metastases From Synchronous Primaries in Non-Small-Cell Lung Cancer: A Mini-Review.
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Klempner SJ, Ou SH, Costa DB, VanderLaan PA, Sanford EM, Schrock A, Gay L, Ali SM, and Miller VA
- Subjects
- Carcinoma, Non-Small-Cell Lung genetics, Carcinoma, Non-Small-Cell Lung pathology, Genomics methods, Humans, Lung Neoplasms genetics, Lung Neoplasms pathology, Neoplasm Metastasis, Neoplasm Staging, Neoplasms, Multiple Primary genetics, Neoplasms, Multiple Primary pathology, Carcinoma, Non-Small-Cell Lung diagnosis, Lung Neoplasms diagnosis, Neoplasms, Multiple Primary diagnosis
- Abstract
The ability to reliably distinguish synchronous primary non-small-cell lung cancer (NSCLC) from intrapulmonary metastatic spread affects staging and treatment decisions in resected NSCLC. Adjuvant therapy for early-stage NSCLC is complicated and recommendations are primarily based on older data from trials that used now-outdated staging systems. Patients found to have 2 tumors with similar morphology in the same lobe are currently staged as pathologic T3 (pT3) but such cases represent a minority of patients in adjuvant lung cancer trials. Potentially more precise than tumor morphology alone, comprehensive genomic profiling technologies have the power to discriminate whether tumors in the same lobe represent 2 separate primary lesions or localized spread of a single lesion. In addition to lineage insights, tumor profiling simultaneously provides information on actionable genomic alterations. In this review we discuss the data that support the ability of molecular technologies to distinguish synchronous primary tumors from intrapulmonary metastases and discuss the use of molecular assays as an adjunct to current staging systems. Two cases are presented to highlight the potential immediate clinical implications of comprehensive genomic profiling., (Copyright © 2015 Elsevier Inc. All rights reserved.)
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- 2015
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26. Detection of Crizotinib-Sensitive Lung Adenocarcinomas With MET, ALK, and ROS1 Genomic Alterations via Comprehensive Genomic Profiling.
- Author
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Le X, Freed JA, VanderLaan PA, Huberman MS, Rangachari D, Jorge SE, Lucena-Araujo AR, Kobayashi SS, Balasubramanian S, He J, Chudnovsky Y, Miller VA, Ali SM, and Costa DB
- Subjects
- Adenocarcinoma genetics, Adenocarcinoma pathology, Adenocarcinoma of Lung, Adult, Aged, Anaplastic Lymphoma Kinase, Antineoplastic Agents therapeutic use, Crizotinib, Female, Genomics, Humans, Lung Neoplasms genetics, Lung Neoplasms pathology, Male, Protein-Tyrosine Kinases genetics, Proto-Oncogene Proteins genetics, Proto-Oncogene Proteins c-met genetics, Receptor Protein-Tyrosine Kinases genetics, Retrospective Studies, Adenocarcinoma drug therapy, Lung Neoplasms drug therapy, Protein Kinase Inhibitors therapeutic use, Pyrazoles therapeutic use, Pyridines therapeutic use
- Published
- 2015
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27. Experience with targeted next generation sequencing for the care of lung cancer: insights into promises and limitations of genomic oncology in day-to-day practice.
- Author
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Rangachari D, VanderLaan PA, Le X, Folch E, Kent MS, Gangadharan SP, Majid A, Haspel RL, Joseph LJ, Huberman MS, and Costa DB
- Abstract
Introduction: Tumor genotyping using single gene assays (SGAs) is standard practice in advanced non-small-cell lung cancer (NSCLC). We evaluated how the introduction of next generation sequencing (NGS) into day-to-day clinical practice altered therapeutic decision-making., Methods: Clinicopathologic data, tumor genotype, and clinical decisions were retrospectively compiled over 6 months following introduction of NGS assay use at our institution in 82 patient-tumor samples (7 by primary NGS, 22 by sequential SGAs followed by NGS, and 53 by SGAs)., Results: SGAs identified abnormalities in 34 samples, and all patients with advanced EGFR -mutated or ALK -rearranged tumors received approved tyrosine kinase inhibitors (TKIs) or were consented for clinical trials. NGS was more commonly requested for EGFR , ALK , and KRAS -negative tumors (p<0.0001). NGS was successful in 24/29 (82.7%) tumors. Of 17 adenocarcinomas (ACs), 11 (7 from patients with ≤15 pack-years of smoking) had abnormalities in a known driver oncogene. This led to a change in decision-making in 8 patients, trial consideration in 6, and off-label TKI use in 2. Of 7 squamous cell (SC) carcinomas, 1 had a driver aberration ( FGFR1 ); 6 had other genomic events (all with TP53 mutations). In no cases were clinical decisions altered (p=0.0538 when compared to ACs)., Conclusions: Targeted NGS can identify a significant number of therapeutically-relevant driver events in lung ACs; particularly in never or light smokers. For SC lung cancers, NGS is less likely to alter current practice. Further research into the cost effectiveness and optimal use of NGS and improved provider training in genomic oncology are warranted.
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- 2015
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28. Adequacy of lymph node transbronchial needle aspirates using convex probe endobronchial ultrasound for multiple tumor genotyping techniques in non-small-cell lung cancer.
- Author
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Folch E, Yamaguchi N, VanderLaan PA, Kocher ON, Boucher DH, Goldstein MA, Huberman MS, Kent MS, Gangadharan SP, Costa DB, and Majid A
- Subjects
- Adenocarcinoma diagnosis, Adult, Aged, Aged, 80 and over, Biopsy, Fine-Needle, Bronchi metabolism, Bronchi pathology, Carcinoma, Non-Small-Cell Lung diagnosis, Carcinoma, Squamous Cell diagnosis, ErbB Receptors genetics, Female, Follow-Up Studies, Genotype, Humans, Lung Neoplasms diagnosis, Lymph Nodes metabolism, Lymph Nodes pathology, Male, Middle Aged, Mutation genetics, Neoplasm Staging, Polymerase Chain Reaction, Prognosis, Proto-Oncogene Proteins genetics, Proto-Oncogene Proteins p21(ras), Retrospective Studies, ras Proteins genetics, Adenocarcinoma genetics, Bronchi diagnostic imaging, Carcinoma, Non-Small-Cell Lung genetics, Carcinoma, Squamous Cell genetics, Endosonography, Lung Neoplasms genetics, Lymph Nodes diagnostic imaging
- Abstract
Introduction: Adequate tumor acquisition is essential to identify somatic molecular alterations in non-small-cell lung cancer (NSCLC), such as epidermal growth factor receptor (EGFR) mutations and anaplastic lymphoma kinase (ALK) translocations. The success and failure rates for tumor genotyping of tissue obtained from fine-needle aspirates of nodal tissue using a convex probe endobronchial ultrasound (CP-EBUS) and other diagnostic modalities in routine NSCLC care have not been described., Methods: Clinicopathologic data, tumor genotype success and failure rates were retrospectively compiled and analyzed from 207 patient-tumor samples sent for routine tumor genotype in clinical practice, including 42 patient-tumor samples obtained from hilar or mediastinal lymph nodes using CP-EBUS., Results: The median age of the patients was 65 years, 62.3% were women, 77.8% were white, 26.6% were never smokers, 73.9% had advanced NSCLC, and 84.1% had adenocarcinoma histology. Tumor tissue was obtained from CP-EBUS-derived hilar or mediastinal nodes in 42 cases (20.2% of total). In this latter cohort, the overall success rate for EGFR mutation analysis was 95.2%, for Kirsten rat sarcoma viral oncogene homolog (KRAS) mutation 90.5%, and for ALK fluorescence in situ hybridization 90.5%. In the complete 207 tumors, the success rate for EGFR was 92.3%, for KRAS 91.8%, and for ALK 89.9%. The failure rates were not significantly different when comparing CP-EBUS-derived nodal tissue versus all other samples or versus surgical biopsies of mediastinal nodes, but were significantly lower than image-guided percutaneous transthoracic core-needle biopsies., Conclusions: The success rate of multiple tumor genomic analyses techniques for EGFR, KRAS, and ALK gene abnormalities using routine lung cancer tissue samples obtained from hilar or mediastinal lymph nodes by means of CP-EBUS exceeds 90%, and this method of tissue acquisition is not inferior to other specimen types. Tumor genotype techniques are feasible in most CP-EBUS-derived samples and therefore further expansion of routine tumor genotype for the care of patients with NSCLC may be possible using targeted sample acquisition through CP-EBUS.
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- 2013
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29. Treatment-related toxicities in a phase II trial of dasatinib in patients with squamous cell carcinoma of the lung.
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Brunner AM, Costa DB, Heist RS, Garcia E, Lindeman NI, Sholl LM, Oxnard GR, Johnson BE, and Hammerman PS
- Subjects
- Adenocarcinoma pathology, Aged, Carcinoma, Non-Small-Cell Lung pathology, Carcinoma, Squamous Cell pathology, Dasatinib, Female, Follow-Up Studies, Humans, Lung Neoplasms pathology, Male, Middle Aged, Neoplasm Recurrence, Local pathology, Neoplasm Staging, Survival Rate, Treatment Outcome, Adenocarcinoma drug therapy, Carcinoma, Non-Small-Cell Lung drug therapy, Carcinoma, Squamous Cell drug therapy, Drug-Related Side Effects and Adverse Reactions diagnosis, Lung Neoplasms drug therapy, Neoplasm Recurrence, Local drug therapy, Protein Kinase Inhibitors adverse effects, Pyrimidines adverse effects, Thiazoles adverse effects
- Abstract
Introduction: Advanced squamous cell carcinoma (SqCC) of the lung carries a poor prognosis, and new therapeutic targets are needed. Several studies have examined dasatinib in non-small cell lung cancer; these report not only significant toxicities, but also responses in patients found to harbor mutations in discoidin domain receptor tyrosine kinase 2 or BRAF. An open-label phase II trial with dasatinib was carried out to determine the response rates in patients with SqCC who had previously failed standard chemotherapy and to correlate responses with patient genotype., Methods: Patients were treated with dasatinib 140 mg daily in 28-day cycles. Patients were included if they had stage IIIb/IV SqCC, Eastern Cooperative Oncology Group performance status of 0 or 1, and for whom treatment with standard chemotherapy had failed., Results: The study was halted after enrolling five patients, all of whom were discontinued from the trial because of excess toxicity of dasatinib administered at 140 mg/day. The patients were treated for 9, 14, 24, 40, and 42 days. Three of five patients (60%) experienced grade 3 or more toxicities (dyspnea, fatigue, elevated level of aspartate transaminase, anorexia, nausea). Intolerable grade 2 pleural effusions were noted in two of five patients. Four of five patients died after 44, 52, 127, and 226 days; one patient remains alive at 279 days. No deaths were associated with the study drug., Conclusions: Similar to other studies, this study too found that dasatinib administered at 140 mg/day for the treatment of advanced SqCC of the lung is associated with excess adverse events, so is not recommended in unselected patients. Further work to identify patients likely to benefit from dasatinib and to manage dasatinib-related toxicities is needed.
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- 2013
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30. Esophagitis: a novel adverse event of crizotinib in a patient with ALK-positive non-small-cell lung cancer.
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Srivastava N, VanderLaan PA, Kelly CP, and Costa DB
- Subjects
- Aged, 80 and over, Anaplastic Lymphoma Kinase, Carcinoma, Non-Small-Cell Lung metabolism, Crizotinib, Esophagitis metabolism, Female, Humans, Lung Neoplasms metabolism, Lung Neoplasms pathology, Neoplasm Staging, Prognosis, Carcinoma, Non-Small-Cell Lung drug therapy, Esophagitis chemically induced, Lung Neoplasms drug therapy, Protein Kinase Inhibitors adverse effects, Pyrazoles adverse effects, Pyridines adverse effects, Receptor Protein-Tyrosine Kinases metabolism
- Published
- 2013
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31. Compound EGFR mutations and response to EGFR tyrosine kinase inhibitors.
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Kobayashi S, Canepa HM, Bailey AS, Nakayama S, Yamaguchi N, Goldstein MA, Huberman MS, and Costa DB
- Subjects
- Aged, Aged, 80 and over, Base Sequence, DNA Mutational Analysis, ErbB Receptors antagonists & inhibitors, Erlotinib Hydrochloride, Exons, Female, Genotype, Humans, Male, Middle Aged, Mutagenesis, Insertional, Quinazolines therapeutic use, Sequence Deletion, Carcinoma, Non-Small-Cell Lung drug therapy, Carcinoma, Non-Small-Cell Lung genetics, ErbB Receptors genetics, Lung Neoplasms drug therapy, Lung Neoplasms genetics, Protein Kinase Inhibitors therapeutic use
- Abstract
Background: Non-small-cell lung cancers (NSCLCs) containing EGFR mutations are exquisitely sensitive to epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs). This is the case of the most common EGFR mutations affecting exon 18 (G719X), 19 (inframe deletions), and 21 (L858R and L861Q). However, the frequency of compound (i.e., double or complex) EGFR mutations-where an EGFR TKI sensitizing or other mutation is identified together with a mutation of unknown clinical significance-and their pattern of response/resistance to EGFR TKIs are less well described., Methods: We analyzed the EGFR mutation pattern of 79 cases of NSCLC harboring EGFR mutations and compiled the genotype-response data for patients with NSCLCs with compound EGFR mutations treated with EGFR TKIs., Results: Of the 79 EGFR-mutated tumors identified, 11 (14%) had compound mutations. Most involved the EGFR TKI-sensitizing G719X (n = 3, plus S768I or E709A), L858R (n = 4, plus L747V, R776H, T790M, or A871G), L861Q (n = 1, plus E709V), and delL747_T751 (n = 1, plus R776H). Eight patients received an EGFR TKI: three cases with G719X plus another mutation had partial responses (PRs) to erlotinib; of three cases with L858R plus another mutation, two displayed PRs and one (with EGFR-L858R+A871G) progressive disease (PD) to erlotinib; one NSCLC with EGFR-L861Q+E709A and one with delL747_T751+R776S had PRs to EGFR TKIs., Conclusion: Compound EGFR mutations comprised 14% of all mutations identified during routine sequencing of exons 18-21 of EGFR in our cohort. Most patients with an EGFR TKI-sensitizing mutation (G719X, exon 19 deletion, L858R, and L861Q) in addition to an atypical mutation responded to EGFR TKIs. Reporting of the genotype-response pattern of NSCLCs with EGFR compound and other rare mutations, and the addition of this information to searchable databases, will be helpful to select the appropriate therapy for EGFR-mutated NSCLC.
- Published
- 2013
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32. EGFR delE709_T710insD: a rare but potentially EGFR inhibitor responsive mutation in non-small-cell lung cancer.
- Author
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Ackerman A, Goldstein MA, Kobayashi S, and Costa DB
- Subjects
- Aged, 80 and over, Carcinoma, Non-Small-Cell Lung drug therapy, Carcinoma, Non-Small-Cell Lung pathology, ErbB Receptors antagonists & inhibitors, Erlotinib Hydrochloride, Female, Humans, Lung Neoplasms drug therapy, Lung Neoplasms pathology, Prognosis, Tomography, X-Ray Computed, Carcinoma, Non-Small-Cell Lung genetics, ErbB Receptors genetics, Lung Neoplasms genetics, Mutation genetics, Protein Kinase Inhibitors therapeutic use, Quinazolines therapeutic use
- Published
- 2012
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33. Preclinical rationale for use of the clinically available multitargeted tyrosine kinase inhibitor crizotinib in ROS1-translocated lung cancer.
- Author
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Yasuda H, de Figueiredo-Pontes LL, Kobayashi S, and Costa DB
- Subjects
- Activin Receptors, Type II antagonists & inhibitors, Activin Receptors, Type II metabolism, Apoptosis drug effects, Blotting, Western, Cell Line, Tumor, Cell Proliferation drug effects, Crizotinib, Humans, Lung Neoplasms metabolism, Lung Neoplasms pathology, Phosphorylation drug effects, Protein-Tyrosine Kinases antagonists & inhibitors, Proto-Oncogene Proteins antagonists & inhibitors, Proto-Oncogene Proteins c-met antagonists & inhibitors, Proto-Oncogene Proteins c-met metabolism, Receptor Protein-Tyrosine Kinases antagonists & inhibitors, Receptor Protein-Tyrosine Kinases metabolism, Drug Evaluation, Preclinical, Lung Neoplasms drug therapy, Protein Kinase Inhibitors pharmacology, Protein-Tyrosine Kinases genetics, Protein-Tyrosine Kinases metabolism, Proto-Oncogene Proteins genetics, Proto-Oncogene Proteins metabolism, Pyrazoles pharmacology, Pyridines pharmacology, Translocation, Genetic
- Abstract
Introduction: Most clinically available small-molecule kinase inhibitors are multi-targeted and can inhibit multiple kinases. Our driving hypothesis was that one of these multi-targeted tyrosine kinase inhibitors (TKIs) would have antiproliferative activity against ROS1 translocated non-small-cell lung cancer (NSCLC)., Methods: We selected NSCLC cell lines--A549 (KRAS G12S), NCI-H3255 (EGFR L858R), NCI-H3122 (EML4-ALK E13;A20), and HCC78 (SLC34A2-ROS1)-to evaluate the antiproliferative effects of submicromolar concentrations of the multitargeted TKIs imatinib, sorafenib, erlotinib, and crizotinib., Results: Imatinib and sorafenib were unable to significantly inhibit proliferation of the aforementioned cell lines. Erlotinib only inhibited EGFR mutated NCI-H3255, as expected. Crizotinib displayed dose-dependent inhibition of anaplastic lymphoma kinase translocated NCI-H3122 and also ROS1--translocated HCC78. The SLC34A2-ROS1 translocated HCC78 cell line had phosphorylated levels of ROS1, AKT, and ERK inhibited by submicromolar doses of crizotinib, and subsequently underwent apoptosis., Conclusions: The ROS1-translocated HCC78 cell line was sensitive to inhibition by the multitargeted ALK/MET/RON/ROS1 inhibitor crizotinib. Preclinical data supports the clinical development of crizotinib for ROS1-translocated NSCLC.
- Published
- 2012
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34. Acquired resistance to the ALK inhibitor crizotinib in the absence of an ALK mutation.
- Author
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Costa DB and Kobayashi S
- Subjects
- Anaplastic Lymphoma Kinase, Carcinoma, Non-Small-Cell Lung genetics, Carcinoma, Non-Small-Cell Lung pathology, Crizotinib, Fatal Outcome, Humans, Liver Neoplasms genetics, Liver Neoplasms secondary, Lung Neoplasms genetics, Lung Neoplasms pathology, Male, Middle Aged, Protein Kinase Inhibitors therapeutic use, Receptor Protein-Tyrosine Kinases antagonists & inhibitors, Carcinoma, Non-Small-Cell Lung drug therapy, Drug Resistance, Neoplasm genetics, Liver Neoplasms drug therapy, Lung Neoplasms drug therapy, Mutation genetics, Pyrazoles therapeutic use, Pyridines therapeutic use, Receptor Protein-Tyrosine Kinases genetics
- Published
- 2012
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35. ALK translocation in non-small cell lung cancer with adenocarcinoma and squamous cell carcinoma markers.
- Author
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Klempner SJ, Cohen DW, and Costa DB
- Subjects
- Adenocarcinoma genetics, Adenocarcinoma pathology, Anaplastic Lymphoma Kinase, Carcinoma, Non-Small-Cell Lung pathology, Carcinoma, Squamous Cell genetics, Carcinoma, Squamous Cell pathology, Humans, In Situ Hybridization, Fluorescence, Lung Neoplasms metabolism, Lung Neoplasms pathology, Male, Middle Aged, Prognosis, Biomarkers, Tumor genetics, Carcinoma, Non-Small-Cell Lung genetics, Lung Neoplasms genetics, Receptor Protein-Tyrosine Kinases genetics, Translocation, Genetic
- Published
- 2011
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36. KRAS mutation analysis helps to differentiate between pulmonary metastasis from colon adenocarcinoma in situ and primary lung adenocarcinoma.
- Author
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Ortiz TM, Cohen DW, Kent MS, Jänne PA, and Costa DB
- Subjects
- Adenocarcinoma secondary, Aged, Carcinoma in Situ pathology, Colonic Neoplasms pathology, DNA, Neoplasm genetics, Female, Humans, Lung Neoplasms pathology, Polymerase Chain Reaction, Prognosis, Proto-Oncogene Proteins p21(ras), Adenocarcinoma genetics, Carcinoma in Situ genetics, Colonic Neoplasms genetics, Lung Neoplasms genetics, Mutation genetics, Proto-Oncogene Proteins genetics, ras Proteins genetics
- Published
- 2011
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37. Serum concentrations of Erlotinib at a dose of 25 mg daily.
- Author
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Costa DB, Kobayashi S, Yeo WL, and Hamada A
- Subjects
- Aged, Carcinoma, Non-Small-Cell Lung drug therapy, Carcinoma, Non-Small-Cell Lung genetics, Chromatography, High Pressure Liquid, ErbB Receptors antagonists & inhibitors, ErbB Receptors genetics, Erlotinib Hydrochloride, Female, Humans, Lung Neoplasms drug therapy, Lung Neoplasms genetics, Male, Middle Aged, Mutation genetics, Protein Kinase Inhibitors therapeutic use, Quinazolines therapeutic use, Carcinoma, Non-Small-Cell Lung blood, Lung Neoplasms blood, Protein Kinase Inhibitors blood, Quinazolines blood
- Published
- 2010
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38. Erlotinib at a dose of 25 mg daily for non-small cell lung cancers with EGFR mutations.
- Author
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Yeo WL, Riely GJ, Yeap BY, Lau MW, Warner JL, Bodio K, Huberman MS, Kris MG, Tenen DG, Pao W, Kobayashi S, and Costa DB
- Subjects
- Adenocarcinoma genetics, Adenocarcinoma pathology, Aged, Aged, 80 and over, Carcinoma, Non-Small-Cell Lung genetics, Carcinoma, Non-Small-Cell Lung pathology, Cell Proliferation drug effects, Erlotinib Hydrochloride, Female, Gefitinib, Humans, Lung Neoplasms genetics, Lung Neoplasms pathology, Male, Middle Aged, Quinazolines administration & dosage, Retrospective Studies, Survival Rate, Treatment Outcome, Tumor Cells, Cultured, Adenocarcinoma drug therapy, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Carcinoma, Non-Small-Cell Lung drug therapy, ErbB Receptors genetics, Lung Neoplasms drug therapy, Mutation genetics
- Abstract
Purpose: The tyrosine kinase inhibitors (TKIs) gefitinib and erlotinib are effective in non-small cell lung cancers (NSCLCs) with epidermal growth factor receptor (EGFR) gene mutations. The usual clinical dose of gefitinib (250 mg/d) is only one third of its maximum tolerated dose, whereas the dose of erlotinib (150 mg/d) is at its maximum tolerated dose. In NSCLC cell lines, both TKIs have similar micromolar inhibitory concentrations. We explored whether erlotinib at 25 mg/d (trough serum concentration similar to gefitinib 250 mg/d) would be efficacious in EGFR-mutated NSCLC., Methods: To study the inhibitory concentrations of gefitinib and erlotinib, we exposed EGFR-mutated cell lines (HCC827, H3255, PC-9, and H1975) to increasing concentrations of these TKIs. Further on, we performed a retrospective evaluation of seven patients with advanced EGFR-mutated (exon 19 deletions and L858R) NSCLC that were given erlotinib at 25 mg/d as their first EGFR TKI., Results: Gefitinib and erlotinib generated similar inhibitory curves across our panel of EGFR-mutated NSCLC cell lines with overlapping mean 50% inhibitory concentration 95% confidence intervals for HCC827, PC-9, and H1975. Both drugs also displayed a high degree of correlation in mean 50% inhibitory concentration (Pearson's r = 0.99, p = 0.0417). Of the seven patients, five patients (71.5%) had partial responses to erlotinib 25 mg/d. Median progression-free survival was 17 months (95% confidence interval, 6-35 months). Toxicities were minimal, with only two (28.5%) patients having a rash and none experiencing (0%) diarrhea., Conclusions: In NSCLC cell lines, gefitinib and erlotinib have similar inhibitory profiles. In patients with NSCLC and EGFR-activating mutations, a dose of erlotinib 25 mg/d (equivalent to gefitinib 250 mg/d) leads to impressive response rates and progression-free survival similar to the growing experience with the approved doses of gefitinib (250 mg/d) and erlotinib (150 mg/d). Identifying prospectively the lowest and clinically active dose ranges of erlotinib and gefitinib will help further to personalize care for patients with tumors harboring EGFR mutations.
- Published
- 2010
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39. Apoptosis induced by JAK2 inhibition is mediated by Bim and enhanced by the BH3 mimetic ABT-737 in JAK2 mutant human erythroid cells.
- Author
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Will B, Siddiqi T, Jordà MA, Shimamura T, Luptakova K, Staber PB, Costa DB, Steidl U, Tenen DG, and Kobayashi S
- Subjects
- Apoptosis genetics, Apoptosis Regulatory Proteins genetics, Bcl-2-Like Protein 11, Female, Humans, Janus Kinase 2 antagonists & inhibitors, Janus Kinase 2 genetics, K562 Cells, Male, Membrane Proteins genetics, Piperazines pharmacology, Polycythemia Vera drug therapy, Polycythemia Vera genetics, Polycythemia Vera metabolism, Proto-Oncogene Proteins genetics, Apoptosis drug effects, Apoptosis Regulatory Proteins metabolism, Biomimetic Materials pharmacology, Biphenyl Compounds pharmacology, Erythroid Cells metabolism, Janus Kinase 2 pharmacology, Membrane Proteins metabolism, Mutation, Nitrophenols pharmacology, Proto-Oncogene Proteins metabolism, Sulfonamides pharmacology
- Abstract
The activating mutation JAK2 V617F plays a central role in the pathogenesis of polycythemia vera, essential thrombocythemia, and primary myelofibrosis. Inhibition of JAK2 activity leads to growth inhibition and apoptosis in cells with mutated JAK2. However, the proapoptotic proteins involved in JAK2 inhibition-induced apoptosis remain unclear. In this study, we show that JAK2 inhibition-induced apoptosis correlated with up-regulation of the nonphosphorylated form of the BH3-only protein Bim in hematopoietic cell lines bearing JAK2 mutations. Knockdown of Bim dramatically inhibited apoptosis induced by JAK2 inhibition, which was reversed by the BH3 mimetic agent ABT-737. In addition, ABT-737 enhanced the apoptosis induced by JAK2 inhibition in JAK2 V617F(+) HEL and SET-2 cells. The combination of JAK inhibitor I and ABT-737 reduced the number of erythroid colonies derived from CD34(+) cells isolated from JAK2 V617F(+) polycythemia vera patients more efficiently than either drug alone. These data suggest that Bim is a key effector molecule in JAK2 inhibition-induced apoptosis and that targeting this apoptotic pathway could be a novel therapeutic strategy for patients with activating JAK2 mutations.
- Published
- 2010
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40. Acquired resistance to epidermal growth factor receptor tyrosine kinase inhibitors in non-small-cell lung cancers dependent on the epidermal growth factor receptor pathway.
- Author
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Nguyen KS, Kobayashi S, and Costa DB
- Subjects
- Afatinib, Carcinoma, Non-Small-Cell Lung genetics, Drug Resistance, Neoplasm genetics, ErbB Receptors genetics, Erlotinib Hydrochloride, Gefitinib, Gene Amplification drug effects, Humans, Lung Neoplasms genetics, Mutation drug effects, Mutation genetics, Protein Kinase Inhibitors pharmacology, Proto-Oncogene Proteins c-met genetics, Proto-Oncogene Proteins c-met metabolism, Quinazolines therapeutic use, Quinazolinones therapeutic use, Carcinoma, Non-Small-Cell Lung drug therapy, Drug Resistance, Neoplasm drug effects, ErbB Receptors metabolism, Lung Neoplasms drug therapy, Protein Kinase Inhibitors therapeutic use
- Abstract
Most advanced non-small-cell lung cancers (NSCLCs) with activating epidermal growth factor receptor (EGFR) mutations (exon 19 deletions or L858R) initially respond to the EGFR tyrosine kinase inhibitors (TKIs) gefitinib and erlotinib. However, over time (median of 6-12 months), most tumors develop acquired resistance to EGFR TKIs. Intense research in these NSCLCs has identified two major mechanisms of resistance to gefitinib/erlotinib: secondary resistance mutations and "oncogene kinase switch" systems. The secondary T790M mutation occurs in 50% of EGFR-mutated patients with TKI resistance, and in vitro, this mutation negates the hypersensitivity of activating EGFR mutations. Sensitive detection methods have identified a proportion of TKI-naive tumors that carry T790M, and these resistant clones may be selected after exposure to gefitinib or erlotinib. Other secondary resistance mutations (D761Y, L747S, T854A) seem to be rare. The amplification of the MET oncogene is present in 20% of TKI-resistant tumors; however, in half of the cases with this "oncogene kinase switch" mechanism the T790M is coexistent. It is possible that other kinases (such as insulin-like growth factor-1 receptor [IGF-1R]) might also be selected to bypass EGFR pathways in resistant tumors. The growing preclinical data in EGFR-mutated NSCLCs with acquired resistance to gefitinib or erlotinib has spawned the initiation or conception of clinical trials testing novel EGFR inhibitors that in vitro inhibit T790M (neratinib, XL647, BIBW 2992, and PF-00299804), MET, or IGF-1R inhibitors in combination with EGFR TKIs, and heat shock protein 90 inhibitors. Ongoing preclinical and clinical research in EGFR-mutated NSCLC has the potential to significantly improve the outcomes of patients with these somatic mutations.
- Published
- 2009
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41. Gefitinib plus docetaxel in non-small-cell lung cancer.
- Author
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Costa DB and Kobayashi S
- Subjects
- Biomarkers, Tumor genetics, Carcinoma, Non-Small-Cell Lung genetics, Carcinoma, Non-Small-Cell Lung mortality, Docetaxel, ErbB Receptors genetics, Gefitinib, Humans, Lung Neoplasms genetics, Lung Neoplasms mortality, Randomized Controlled Trials as Topic, Antineoplastic Agents therapeutic use, Carcinoma, Non-Small-Cell Lung drug therapy, ErbB Receptors drug effects, Lung Neoplasms drug therapy, Protein Kinase Inhibitors therapeutic use, Quinazolines therapeutic use, Taxoids therapeutic use
- Published
- 2009
- Full Text
- View/download PDF
42. Erlotinib-associated alopecia in a lung cancer patient.
- Author
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Costa DB, Kobayashi S, and Schumer ST
- Subjects
- Aged, Alopecia physiopathology, Carcinoma, Non-Small-Cell Lung pathology, Dose-Response Relationship, Drug, Drug Administration Schedule, Erlotinib Hydrochloride, Female, Follow-Up Studies, Humans, Lung Neoplasms pathology, Protein Kinase Inhibitors adverse effects, Protein Kinase Inhibitors therapeutic use, Quinazolines therapeutic use, Risk Assessment, Alopecia chemically induced, Carcinoma, Non-Small-Cell Lung drug therapy, Lung Neoplasms drug therapy, Quinazolines adverse effects
- Published
- 2007
- Full Text
- View/download PDF
43. Case of fatal sickle cell intrahepatic cholestasis despite use of exchange transfusion in an African-American patient.
- Author
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Costa DB, Miksad RA, Buff MS, Wang Y, and Dezube BJ
- Subjects
- Comorbidity, Erythrocyte Transfusion, Fatal Outcome, Humans, Liver pathology, Liver Failure etiology, Male, Middle Aged, Renal Insufficiency etiology, Black or African American, Anemia, Sickle Cell complications, Anemia, Sickle Cell epidemiology, Cholestasis, Intrahepatic etiology, Exchange Transfusion, Whole Blood, Fibrosis epidemiology, Hepatitis C epidemiology, beta-Thalassemia epidemiology
- Abstract
Sickle cell intrahepatic cholestasis (SCIC) is a rare complication of sickle cell anemia, characterized by marked hyperbilirubinemia and acute hepatic failure with an often fatal course. However, the few reported adult cases that were treated with exchange transfusion had a favorable outcome. We herein describe a 48-year-old African-American man with hemoglobin S/B thalassemia and previously treated hepatitis C with compensated cirrhosis, who presented with a total bilirubin of 59.7 mg/dL and direct bilirubin of 43.6 mg/dL in the absence of choledocholithiasis. Despite an exchange transfusion and aggressive packed red blood cell transfusions, which successfully decreased the hemoglobin S levels to <15%, he perished from progressive hepatic and renal failure. Autopsy demonstrated extensive intrahepatocellular and intracanalicular cholestasis in a background of cirrhosis. Our case suggests that poor prognostic factors for adult SCIC patients treated with exchange transfusion may include older age and underlying hepatic disease.
- Published
- 2006
44. A novel splicing mutation of the alpha-spectrin gene in the original hereditary pyropoikilocytosis kindred.
- Author
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Costa DB, Lozovatsky L, Gallagher PG, and Forget BG
- Subjects
- Alleles, Anemia, Hemolytic pathology, Animals, COS Cells, Chlorocebus aethiops, Exons genetics, Gene Expression, Heterozygote, Humans, Models, Genetic, RNA, Messenger genetics, RNA, Messenger metabolism, Anemia, Hemolytic genetics, Mutation genetics, RNA Splicing genetics, Spectrin genetics
- Abstract
Hereditary pyropoikilocytosis (HPP) is a severe hemolytic anemia due to abnormalities of the red blood cell (RBC) membrane skeleton. In the original HPP kindred, there is compound heterozygosity for an allele encoding a structural variant of alpha-spectrin (L207P) and an alpha-spectrin allele associated with a defect in alpha-spectrin production. To identify the molecular defect in the production-defective allele, reticulocyte alpha-spectrin cDNA from one of the original HPP patients was analyzed. Transcripts from the production-defective, non-L207P allele demonstrated a pattern of abnormal splicing between exons 22 and 23, resulting in insertion of intronic fragments with an in-frame premature termination codon. A G to A substitution at position +5 of the donor consensus splice site of IVS 22 was identified in the inserts. Following gene transfer into tissue culture cells, there was complete absence of normally spliced alpha-spectrin gene transcripts derived from a minigene containing the IVS 22 +5 mutation.
- Published
- 2005
- Full Text
- View/download PDF
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