1. Data highlighting phenotypic diversity of urine-associated Escherichia coli isolates
- Author
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Simona G. Codreanu, Emily K. Apple, Maria Hadjifrangiskou, Gerald T. Van Horn, Charles W. Stratton, Connor J. Beebout, Douglass B. Clayton, Shuvro De, John A. McLean, Madison J. Fitzgerald, Stacy D. Sherrod, Ching Man Carmen Tong, Allison R. Eberly, Jonathan E. Schmitz, Hamilton D. Green, and Alexandra C. Schrimpe-Rutledge
- Subjects
Urine ,Biology ,medicine.disease_cause ,lcsh:Computer applications to medicine. Medical informatics ,Microbiology ,03 medical and health sciences ,0302 clinical medicine ,Metabolomics ,Cystitis ,medicine ,Uropathogenic Escherichia coli ,University medical ,Colonization ,lcsh:Science (General) ,Escherichia coli ,030304 developmental biology ,0303 health sciences ,Urinary tract infection ,Multidisciplinary ,Biofilm ,Phenotype ,Metabolomics data ,lcsh:R858-859.7 ,Asymptomatic bacteriuria ,030217 neurology & neurosurgery ,lcsh:Q1-390 - Abstract
This article provides a reusable dataset describing detailed phenotypic and associated clinical parameters in n=303 clinical isolates of urinary Escherichia coli collected at Vanderbilt University Medical Center. De-identified clinical data collected with each isolate are detailed here and correlated to biofilm abundance and metabolomics data. Biofilm-abundance data were collected for each isolate under different in vitro conditions along with datasets quantifying biofilm abundance of each isolate under different conditions. Metabolomics data were collected from a subset of bacterial strains isolated from uncomplicated cases of cystitis or cases with no apparent symptoms accompanying colonization. For more insight, please see “Defining a Molecular Signature for Uropathogenic versus Urocolonizing Escherichia coli: The Status of the Field and New Clinical Opportunities” [1] .
- Published
- 2020