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Since the invention of scanning probe microscopy, researchers have desired to use this technique to monitor sub-second surface dynamics with atomic spatial resolution. A recently presented add-on electronics module enables the speed-up of existing, conventional scanning probe microscopes without any modification of the actual instrument. The resulting one-dimensional (1D) data stream, recorded while the tip oscillates in a sinusoidal motion, has to be reconstructed into a layered rectangular matrix in order to visualize the movie. The Python-based pyfastspm package performs this conversion, while also correcting for sample tilt, noise frequencies, piezo creep, and thermal drift. Quick automatic conversion even of considerable batches of data is achieved by efficient algorithms that bundle time-expensive steps, such as interpolation based on Delaunay triangulation.

High-speed video recording of the vocal folds during sustained phonation has become a widespread diagnostic tool, and the development of imaging techniques able to perform automated tracking and analysis of relevant glottal cues, such as folds edge position or glottal area, is an active research field. In this paper, a vocal folds vibration analysis method based on the processing of visual data through a biomechanical model of the layngeal dynamics is proposed. The procedure relies on a Bayesian non-stationary estimation of the biomechanical model parameters and state, to fit the folds edge position extracted from the high-speed video endoscopic data. This finely tuned dynamical model is then used as a state transition model in a Bayesian setting, and it allows to obtain a physiologically motivated estimation of upper and lower vocal folds edge position. Based on model prediction, an hypothesis on the lower fold position can be made even in complete fold occlusion conditions occurring during the end of the closed phase and the beginning of the open phase of the glottal cycle. To demonstrate the suitability of the procedure, the method is assessed on a set of audiovisual recordings featuring high-speed video endoscopic data from healthy subjects producing sustained voiced phonation with different laryngeal settings.