1. Characterization of CD8 + virtual memory T cells in IL-4 knockout mice using single-cell RNA sequencing.
- Author
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Choi SM, Park HJ, Boo HJ, Jung KC, and Lee JI
- Subjects
- Animals, Mice, Sequence Analysis, RNA methods, Memory T Cells immunology, Memory T Cells metabolism, Immunologic Memory, CD8-Positive T-Lymphocytes immunology, CD8-Positive T-Lymphocytes metabolism, Mice, Knockout, Interleukin-4 metabolism, Interleukin-4 immunology, Interleukin-4 genetics, Mice, Inbred C57BL, Single-Cell Analysis methods
- Abstract
Antigen-inexperienced memory-phenotype CD8
+ T cells are categorized as innate memory cells in the thymus or virtual memory (VM) CD8+ T cells in peripheral tissues. The key distinction between these cell types is their differing responses to IL-4, but the minimal effect of IL-4 on VM CD8+ T cell expansion in the periphery is not well understood. To address this, we investigated the development of VM CD8+ T cells in the periphery of IL-4 knockout (KO) C57BL/6 mouse. CD8+ splenocytes were isolated from the spleen of wilt-type (WT) and IL-4 KO mice, followed by single-cell RNA sequencing and Seurat analysis on sorted CD8+ cells using the 10x Genomics platform. This study identified various CD8+ T cell subtypes, including naïve, effector, IFN-stimulated, true memory (TM), and VM T cells. VM CD8+ T cells were characterized by high expression of Cd44, Cxcr3, Il2rb, Eomes, Tbx21, Ly6c2, and low expression of Itga4. In IL-4-deficient mouse, macrophages were significantly reduced, while memory T cell populations showed a slight increase compared to WT mouse. Both Itga4+ TM and Itga4- VM CD8+ T cells were more abundant in IL-4 KO mouse. Within the VM T cell group, Ly6a- VM CD8+ T cells were reduced, while Ly6a+ VM CD8+ T cells were increased relative to WT mouse. These Ly6a+ VM CD8+ cells exhibited high expression of genes linked to type I IFN signaling, such as Isg15, Ifit1, and Stat1. Our findings suggest that IFN-influenced Ly6a+ VM CD8+ T cells play a role in maintaining the peripheral VM CD8+ T cell population in the absence of IL-4., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2024
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