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Seamounts represent ecologically important marine environments and undeniably play a crucial role in the functioning of the deep-sea ecosystems, thanks primarily to their contribution in supporting offshore benthic and pelagic biodiversity. In the last decades, these features have received attention in all oceans of the world, but they were relatively overlooked in the Mediterranean Sea. In particular, the Ligurian Sea hosts six major structures, whose summits, ranging from 150 to nearly 2000 m depth, are virtually unknown from the biological point of view. The summit region of the Janua Seamount, located approximately at 40 nautical miles off the harbour of Genoa at 810 m depth, was explored for the first time using Remotely Operated Vehicles. The sea bed topography is characterized by a heterogeneous hard bottom, dominated by sub-fossil thanatocoenoses of Lophelia pertusa (Linnaeus, 1758) covered in a thick Ferrous-Manganese crust, and colonized by a scattered bathyal assemblage dominated by hexactinellids and benthic cnidarians showing a distinct regionalization around the summit. Cnidarians observed in this site include a rare Atlantic bamboo coral (Isididae, Chelidonisis aurantiaca Studer, 1890), described herein for the first time for the Mediterranean Basin. These findings provide new information on the biogeographic patterns of colonization of the bathyal Mediterranean fauna but also highlight the large knowledge gap that still exists for deep-sea biodiversity of this basin.

A mono-specific population of Isidella elongata in the Ventotene Basin (Pontine Islands, western Mediterranean Sea) was recently revealed by ROV survey. This vulnerable marine community was found on top of a 3.6 km long morphological high, in water depths between 510 and 560 m. Side scan sonar data showed the presence of several trawl marks suggesting a high anthropogenic impact of the study area. Furthermore, multibeam and high-resolution seismic data revealed the presence of widespread pockmarks, indicating occurrence of fluids in the sub-seafloor.

Special issue Bridging the gap between the shallow and deep oceans: The key role of submarine canyons.-- 13 pages, 9 figures, 2 tables, The impacts of fishing activities on ecosystems represent an acknowledged environmental issue, especially considering the increasing demands for the conservation of biodiversity. Submarine canyons are complex environments that can harbor high biodiversity of benthic ecosystems and high biomass of fish species, thus representing preferential fishing areas for bottom trawling fleets. The effects of bottom trawling on the benthic epifauna were investigated over the soft-bottom margins of the Gioia Canyon (Southeastern Tyrrhenian Sea) by means of quantitative analysis of Remote Operated Vehicle (ROV) video transects and compared with the recent pattern of trawling intensity, reconstructed through processing of data collected with the Vessel Monitoring System (VMS). Four ROV transects were then performed at 320–540 m depth in areas affected by different trawling pressure. The analysis was focused on the bamboo coral Isidella elongata and the sea pen Funiculina quadrangularis, which are considered indicator taxa of Vulnerable Marine Ecosystems (VMEs) and relevant in terms of sustainable management priorities. I. elongata only occurred at the two deeper stations, below 400 m depth. This species showed a clear relationship with trawling intensity, since its abundance was significantly higher under low trawling intensity, where coexistence of large (>20 cm height) and small colonies was observed. The relatively high prevalence of small colonies in areas exposed to higher trawling effort was interpreted as a consequence of the trawling activity that removed the larger colonies. However, the frequent occurrence of dead colonies and the diffuse presence of epibionts (e.g. the anemone Amphianthus dohrnii and the hydroid Clytia linearis) on living colonies indicate stressful conditions for I. elongata even in areas where trawling intensity was lower. Conversely, the relationship between trawling intensity and species abundance was not straightforward for F. quadrangularis; despite the lowest abundance of this species was recorded in areas subject to high trawling intensity, relatively high abundances were observed in areas with intermediate trawling effort. Although such distribution may be driven by other environmental factors, it suggests that vulnerability to bottom trawling can be different for the two species

Publisher Summary This chapter discusses the taxonomy, phylogeny, biogeography, ecology, and reproductive biology of deep-sea octocorals and also focuses on gorgonian octocorals because they are the predominant octocoral group in the deep sea. The most widely accepted taxonomic scheme for octocorals divides the subclass into four orders: (1) helioporacea, (2) alcyonacea, (3) gorgonacea, and (4) pennatulacea. The distinctions between most orders and suborders are blurred by intermediate taxa that resulted in a continuum of colonial organization and skeletal structure. The major areas of study of deep-sea gorgonians and sources of species descriptions are also summarized. Octocorals have been known from deep water in the North Atlantic, although the Challenger expedition showed that octocorals could be found in the depths of all oceans. Knowledge of deep-water octocorals of the Indo-West Pacific region is meagre and contrasts with the wealth of information on shallow-water taxa. The distribution of the three major deep-sea families' discussed are––chrysogorgiidae, isididae, and primnoidae. Deep-sea octocoral colonies are often large so it offers a wide range of biogenic habitats to other invertebrate species. The chapter also focuses on those invertebrate species that are found most frequently on the octocoral host. Reproduction, growth, age, food habits, and conservation issues are also considered.