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Multisensory learning profits from stimulus congruency at different levels of processing. In the current study, we sought to investigate whether multisensory learning can potentially be based on high-level feature congruency (same meaning) without perceptual congruency (same time) and how this relates to changes in brain function and behaviour. 50 subjects learned to decode Morse code (MC) either in unisensory or different multisensory manners. During unisensory learning, the MC was trained as sequences of auditory trains. For low-level congruent (perceptual) multisensory learning, MC was applied as tactile stimulation to the left hand simultaneously to the auditory stimulation. In contrast, high-level congruent multisensory learning involved auditory training, followed by the production of MC sequences requiring motor actions and thereby excludes perceptual congruency. After learning, group differences were observed within three distinct brain regions while processing unisensory (auditory) MC. Both types of multisensory learning were associated with increased activation in the right inferior frontal gyrus. Multisensory low-level learning elicited additional activation in the somatosensory cortex, while multisensory high-level learners showed a reduced activation in the inferior parietal lobule, which is relevant for decoding MC. Furthermore, differences in brain function associated with multisensory learning was related to behavioural reaction times for both multisensory learning groups. Overall, our data support the idea that multisensory learning is potentially based on high-level features without perceptual congruency. Furthermore, learning of multisensory associations involves neural representations of stimulus features involved in learning, but also share common brain activation (i.e. the right IFG), which seems to serve as a site of multisensory integration., (Copyright © 2021 The Authors. Published by Elsevier B.V. All rights reserved.)