1. Vision, challenges and opportunities for a Plant Cell Atlas
- Author
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George W. Bassel, Claire D McWhite, Dhruv Lavania, Gazala Ameen, Christopher R. Anderton, Rajiv K. Tripathi, Maria J. Harrison, Josh T. Cuperus, Amir H. Ahkami, William P Dwyer, Bao-Hua Song, Fabio Zanini, Miguel Miñambres Martín, Atique ur Rehman, Cesar L. Cuevas-Velazquez, Ari Pekka Mähönen, Tamas Varga, Gergo Palfalvi, Andrew Farmer, Matthew M. S. Evans, Vaishali Arora, Uwe John, Mathew G. Lewsey, Dominique C. Bergmann, Selena L Rice, Mario A. Arteaga-Vazquez, Dae Kwan Ko, Tedrick Thomas Salim Lew, Jennifer A N Brophy, Jenny C Mortimer, Marc Libault, Bruno Contreras-Moreira, Benjamin J. Cole, Naomi Nakayama, Marcela K. Tello-Ruiz, Ronelle Roth, Laura E. Bartley, Tingting Xiang, Benjamin Buer, Shyam Solanki, Nicolas L. Taylor, Feng Zhao, Shao-shan Carol Huang, Alok Arun, Pinky Agarwal, Marisa S. Otegui, Arun Kumar, Marija Vidović, Pankaj Kumar, Aaron J. Ogden, Sagar Kumar, Puneet Paul, Sergio Alan Cervantes-Pérez, Purva Karia, Stefan de Folter, Kerstin Kaufmann, Gary Stacey, Le Liu, Robert E. Jinkerson, Javier Brumos, Harmanpreet Kaur, Tatsuya Nobori, David W. Ehrhardt, Francisco J. Corpas, Steven P. Briggs, James Whelan, Batthula Vijaya Lakshmi Vadde, Peter H Denolf, Tie Liu, Kamal Kumar Malukani, Elsa H Quezada-Rodríguez, Jahed Ahmed, Hai Ying Yuan, Rajveer Singh, Trevor M. Nolan, Ramesh Katam, Mather A Khan, Jamie Waese, Toshihiro Obata, Ramin Yadegari, Lachezar A. Nikolov, Seung Y. Rhee, Luis C. Romero, Ajay Kumar, Kenneth D. Birnbaum, Nicholas J. Provart, Tuan M Tran, Sakil Mahmud, Maida Romera-Branchat, Pradeep Kumar, Saroj K Sah, Ai My Luong, Alexandre P. Marand, R. Clay Wright, Yana Kazachkova, Moises Exposito-Alonso, Klaas J. van Wijk, Noah Fahlgren, Peter Denolf, Fabio Gomez-Cano, Houlin Yu, Luigi Di Costanzo, Adrien Burlaocot, Alfredo Cruz-Ramírez, Pingtao Ding, Dianyi Liu, Renate A Weizbauer, Suryatapa Ghosh Jha, Jie Zhu, Pubudu P. Handakumbura, Kaushal Kumar Bhati, Edoardo Bertolini, Anna Stepanova, Rachel Shahan, Lisa I David, Justin W. Walley, Lydia-Marie Joubert, Nancy George, Sanjay Joshi, José M. Palma, Rosangela Sozzani, Mark-Christoph Ott, Sixue Chen, Ansul Lokdarshi, Sunil Kumar Kenchanmane Raju, Chien-Yuan Lin, Iain C. Macaulay, Venura Herath, Noel Blanco-Touriñán, Rajdeep S. Khangura, Zhi-Yong Wang, Alexander T. Borowsky, Julia Bailey-Serres, Andrey V Malkovskiy, Xiaohong Zhuang, Oluwafemi Alaba, Yuling Jiao, Abhishek Joshi, Devang Mehta, Maite Saura-Sanchez, Carly A Martin, Stefania Giacomello, Elizabeth S. Haswell, Shou-Ling Xu, R. Glen Uhrig, Asela J. Wijeratne, National Science Foundation (US), Jha, S. G., Borowsky, A. T., Cole, B. J., Fahlgren, N., Farmer, A., Huang, S. C., Karia, P., Libault, M., Provart, N. J., Rice, S. L., Saura-Sanchez, M., Agarwal, P., Ahkami, A. H., Anderton, C. R., Briggs, S. P., Brophy, J. A., Denolf, P., Di Costanzo, L., Exposito-Alonso, M., Giacomello, S., Gomez-Cano, F., Kaufmann, K., Ko, D. K., Kumar, S., Malkovskiy, A. V., Nakayama, N., Obata, T., Otegui, M. S., Palfalvi, G., Quezada-Rodriguez, E. H., Singh, R., Uhrig, R. G., Waese, J., VAN WIJK, K., Wright, R. C., Ehrhardt, D. W., Birnbaum, K. D., Rhee, S. Y., Helsinki Institute of Life Science HiLIFE, and Institute of Biotechnology
- Subjects
Life Sciences & Biomedicine - Other Topics ,0106 biological sciences ,Engineering ,chlamydomonas reinhardtii ,Chloroplasts ,Plant Cell Atla ,0601 Biochemistry and Cell Biology ,maize ,01 natural sciences ,Zea may ,Plant science ,Molecular level ,cell biology ,Plant Cell Atlas Consortium ,Image Processing, Computer-Assisted ,Biology (General) ,single-cell omic ,2. Zero hunger ,0303 health sciences ,Atlas (topology) ,General Neuroscience ,Agriculture ,General Medicine ,Plants ,ARABIDOPSIS ,C-4 PHOTOSYNTHESIS ,Plant Cell Atlas ,single-cell omics ,Plant development ,VOCABULARY ,SYSTEMS BIOLOGY ,Medicine ,location-to-function ,Life Sciences & Biomedicine ,4D imaging ,QH301-705.5 ,DATABASE ,Science ,Plant Development ,Translational research ,Cellular level ,Environmental stewardship ,Zea mays ,Chloroplast ,General Biochemistry, Genetics and Molecular Biology ,MECHANISMS ,03 medical and health sciences ,Component (UML) ,Plant Cells ,Biology ,030304 developmental biology ,General Immunology and Microbiology ,business.industry ,Feature Article ,Computational Biology ,Plant ,15. Life on land ,11831 Plant biology ,GENE ,Data science ,science forum ,translational research ,13. Climate action ,A. thaliana ,PLASTIDS ,Biochemistry and Cell Biology ,business ,GENERATION ,010606 plant biology & botany - Abstract
With growing populations and pressing environmental problems, future economies will be increasingly plant-based. Now is the time to reimagine plant science as a critical component of fundamental science, agriculture, environmental stewardship, energy, technology and healthcare. This effort requires a conceptual and technological framework to identify and map all cell types, and to comprehensively annotate the localization and organization of molecules at cellular and tissue levels. This framework, called the Plant Cell Atlas (PCA), will be critical for understanding and engineering plant development, physiology and environmental responses. A workshop was convened to discuss the purpose and utility of such an initiative, resulting in a roadmap that acknowledges the current knowledge gaps and technical challenges, and underscores how the PCA initiative can help to overcome them., National Science Foundation 1916797 David W Ehrhardt, Kenneth D Birnbaum, Seung Yon Rhee; National Science Foundation 2052590 Seung Yon Rhee
- Published
- 2021