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Scientific thinking is a basic skill that can support problemsolving of interdisciplinary tasks in science. Our research is leading us to creation of materials and resources that will support this interdisciplinary approach to education. The research includes interviews with high-school teachers of mathematics, chemistry and science, item analysis of extensive testing of knowledge and skills of high school students in chemistry in Czech Republic, follow-up survey of students’ problem-solving processes in tasks requiring the use of combined knowledge of mathematics and chemistry and the creation of educational materials. The article contains a few examples of proposed educational materials. The effectiveness of created materials is verified in high-schools. Students have got the most difficulties applying algebraic calculations in chemistry, using proportions, solving equations, expressing the unknown, the spatial imagination, geometry and stereometry and the resulting arrangement of atoms and shapes of molecules, chemical analytical tasks with logical thinking, interpretation of information from graphs and tables, plotting measured values into graphs and statistical evaluation.