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Coastal wetlands are essential for regulating the global carbon budget through soil carbon sequestration and greenhouse gas (GHG – CO2, CH4, and N2O) fluxes. The conversion of coastal wetlands to agricultural land alters these fluxes' magnitude and direction (uptake/release). However, the extent and drivers of change of GHG fluxes are still unknown for many tropical regions. We measured soil GHG fluxes from three natural coastal wetlands – mangroves, salt marsh, and freshwater tidal forests – and two alternative agricultural land uses – sugarcane farming and pastures for cattle grazing (ponded and dry conditions). We assessed variations throughout different climatic conditions (dry–cool, dry–hot, and wet–hot) within 2 years of measurements (2018–2020) in tropical Australia. The wet pasture had by far the highest CH4 emissions with 1231±386 mgm-2d-1, which were 200-fold higher than any other site. Dry pastures and sugarcane were the highest emitters of N2O with 55±9 mgm-2d-1 (wet–hot period) and 11±3 mgm-2d-1 (hot-dry period, coinciding with fertilisation), respectively. Dry pastures were also the highest emitters of CO2 with 20±1 gm-2d-1 (wet–hot period). The three coastal wetlands measured had lower emissions, with salt marsh uptake of -0.55±0.23 and -1.19±0.08 gm-2d-1 of N2O and CO2, respectively, during the dry–hot period. During the sampled period, sugarcane and pastures had higher total cumulative soil GHG emissions (CH4+N2O) of 7142 and 56 124 CO2-eqkgha-1yr-1 compared to coastal wetlands with 144 to 884 CO2-eqkgha-1yr-1 (where CO2-eq is CO2 equivalent). Restoring unproductive sugarcane land or pastures (especially ponded ones) to coastal wetlands could provide significant GHG mitigation.

Hypersaline tidal flats (HTFs) are coastal ecosystems with freshwater deficits often occurring in arid or semi-arid regions near mangrove supratidal zones with no major fluvial contributions. Here, we estimate that organic carbon (OC), total nitrogen (TN) and total phosphorus (TP) were buried at rates averaging 21 (±6), 1.7 (±0.3) and 1.4 (±0.3) gm-2yr-1, respectively, during the previous century in three contrasting HTF systems, one in Brazil (eutrophic) and two in Australia (oligotrophic). Although these rates are lower than those from nearby mangrove, saltmarsh and seagrass systems, the importance of HTFs as sinks for OC, TN and TP may be significant given their extensive coverage. Despite the measured short-term variability between net air–saltpan CO2 influx and emission estimates found during the dry and wet season in the Brazilian HTF, the only site with seasonal CO2 flux measurements, the OC sedimentary profiles over several decades suggest efficient OC burial at all sites. Indeed, the stable isotopes of OC and TN (δ13C and δ15N) along with C:N ratios show that microphytobenthos are the major source of the buried OC in these HTFs. Our findings highlight a previously unquantified carbon as well as a nutrient sink and suggest that coastal HTF ecosystems could be included in the emerging blue carbon framework.

A combination of elemental analysis, bulk stable isotope analysis (bulk SIA) and compound-specific stable isotope analysis of amino acids (CSIA-AA) was used to assess and monitor carbon (C), nitrogen (N) and sulfur (S) cycling of a mangrove ecosystem that suffered mass dieback of trees in the Gulf of Carpentaria, Australia in 2015–2016, attributed to an extreme drought event. Three field campaigns were conducted 8, 20 and 32 months after the event over a period from 2016 to 2018 to obtain biological time-series data. Invertebrates and associated organic matter including mangroves and sediments from the impacted ecosystem showed enrichment in 13C, 15N and 34S relative to those from an adjacent unimpacted reference ecosystem, likely indicating lower mangrove carbon fixation, lower nitrogen fixation and lower sulfate reduction in the impacted ecosystem. For example, invertebrates representing the feeding types of grazing, leaf feeding and algae feeding were more 13C enriched at the impacted site, by 1.7 ‰–4.1 ‰, and these differences did not change over the period from 2016 to 2018. The CSIA-AA data indicated widespread 13C enrichment across five essential amino acids and all groups sampled (except filter feeders) within the impacted site. The seedling density increased from 0.2 m−2 in 2016 to 7.1 m−2 in 2018 in the impacted forest, suggesting recovery of the vegetation. Recovery of CNS cycling, however, was not evident even after 32 months, suggesting a biogeochemical legacy of the mortality event. Continued monitoring of the post-dieback forest is required to predict the long-term trajectory of ecosystem recovery. This study shows that time-series SIA can track biogeochemical changes over time and evaluate recovery of an impacted ecosystem from an extreme event.

A massive mangrove dieback event occurred in 2015–2016 along ∼1000 km of pristine coastline in the Gulf of Carpentaria, Australia. Here, we use sediment and wood chronologies to gain insights into geochemical and climatic changes related to this dieback. The unique combination of low rainfall and low sea level observed during the dieback event had been unprecedented in the preceding 3 decades. A combination of iron (Fe) chronologies in wood and sediment, wood density and estimates of mangrove water use efficiency all imply lower water availability within the dead mangrove forest. Wood and sediment chronologies suggest a rapid, large mobilization of sedimentary Fe, which is consistent with redox transitions promoted by changes in soil moisture content. Elemental analysis of wood cross sections revealed a 30- to 90-fold increase in Fe concentrations in dead mangroves just prior to their mortality. Mangrove wood uptake of Fe during the dieback is consistent with large apparent losses of Fe from sediments, which potentially caused an outwelling of Fe to the ocean. Although Fe toxicity may also have played a role in the dieback, this possibility requires further study. We suggest that differences in wood and sedimentary Fe between living and dead forest areas reflect sediment redox transitions that are, in turn, associated with regional variability in groundwater flows. Overall, our observations provide multiple lines of evidence that the forest dieback was driven by low water availability coinciding with a strong El Niño–Southern Oscillation (ENSO) event and was associated with climate change.

Although wetlands represent the largest natural source of atmospheric CH4, large uncertainties remain regarding the global wetland CH4 flux. Wetland hydrological oscillations contribute to this uncertainty, dramatically altering wetland area, water table height, soil redox potentials, and CH4 emissions. This study compares both terrestrial and aquatic CH4 fluxes in permanent and seasonal remediated freshwater wetlands in subtropical Australia over two field campaigns, representing differing hydrological and climatic conditions. We account for aquatic CH4 diffusion and ebullition rates and plant-mediated CH4 fluxes from three distinct vegetation communities, thereby examining diel and intra-habitat variability. CH4 emission rates were related to underlying sediment geochemistry. For example, distinct negative relationships between CH4 fluxes and both Fe(III) and SO42- were observed. Where sediment Fe(III) and SO42- were depleted, distinct positive trends occurred between CH4 emissions and Fe(II) ∕ acid volatile sulfur (AVS). Significantly higher CH4 emissions (p CH4 flux. The highest CH4 fluxes were consistently emitted from the permanent wetland (1.5 to 10.5 mmol m−2 d−1), followed by the Phragmites australis community within the seasonal wetland (0.8 to 2.3 mmol m−2 d−1), whilst the lowest CH4 fluxes came from a region of forested Juncus spp. (−0.01 to 0.1 mmol m−2 d−1), which also corresponded to the highest sedimentary Fe(III) and SO42-. We suggest that wetland remediation strategies should consider geochemical profiles to help to mitigate excessive and unwanted methane emissions, especially during early system remediation periods.

A new approach to autonomously determine concentrations of dissolved inorganic carbon (DIC) and its carbon stable isotope ratio (δ13C–DIC) at high temporal resolution is presented. The simple method requires no customised design. Instead it uses two commercially available instruments currently used in aquatic carbon research. An inorganic carbon analyser utilising non-dispersive infrared detection (NDIR) is coupled to a Cavity Ring-down Spectrometer (CRDS) to determine DIC and δ13C–DIC based on the liberated CO2 from acidified aliquots of water. Using a small sample volume of 2 mL, the precision and accuracy of the new method was comparable to standard isotope ratio mass spectrometry (IRMS) methods. The system achieved a sampling resolution of 16 min, with a DIC precision of ±1.5 to 2 µmol kg−1 and δ13C–DIC precision of ±0.14 ‰ for concentrations spanning 1000 to 3600 µmol kg−1. Accuracy of 0.1 ± 0.06 ‰ for δ13C–DIC based on DIC concentrations ranging from 2000 to 2230 µmol kg−1 was achieved during a laboratory-based algal bloom experiment. The high precision data that can be autonomously obtained by the system should enable complex carbonate system questions to be explored in aquatic sciences using high-temporal-resolution observations.

Benthic metabolism and inorganic nitrogen and N2 flux rates (denitrification) were measured in permeable carbonate sands from Heron Island (Great Barrier Reef). Some of the N2 flux rates were among the highest measured in sediments. All benthic fluxes showed a significant difference between seasons with higher rates in summer and late summer. There was no distinct response of the benthic system to mass coral spawning. Instead, changes in benthic fluxes over 12 days in summer appear to be driven by tidal changes in water depth and associated changes in phytosynthetically active radiation reaching the sediments. Dark N2 fluxes were strongly correlated to benthic oxygen consumption across all sites and seasons (r2 = 0.63; p < 0.005; slope = 0.035). However, there were seasonal differences with a steeper slope in summer than winter, reflecting either more efficient coupling between respiration and nitrification–denitrification at higher temperatures or different sources of organic matter. Adding data from published studies on carbonate sands revealed two slopes in the dark N2 flux versus benthic oxygen consumption relationship. The lower slope (0.035) was most likely due to high carbon : nitrogen (C : N) organic matter from coral reefs, and associated assimilation of nitrogen by heterotrophic bacteria including enhanced heterotrophic N-fixation, but competition by benthic microalgae or inefficient coupling between respiration and nitrification–denitrification cannot be excluded. The steeper slope (0.089) was most likely due to respiration being driven by low C : N phytodetritus. If the different slopes were driven by the sources of organic matter, then global estimates of continental shelf denitrification are probably about right. In contrast, global estimates of continental shelf denitrification may be over-estimated if the low slope was due to inefficient coupling between respiration and nitrification–denitrification and also due to reduced N2 effluxes in the light associated with competition by benthic microalgae for nitrogen and N-fixation.