An NGS-based taxonomic analysis was carried out on airborne bacteria sampled at ground level in two periods (May and September) and two opposite localities on the North-South axis of the Sardinia Island. Located in a central position of the Mediterranean basin, Sardinia constitutes a suitable outpost to reveal possible immigration of bacterial taxa during transcontinental particle discharge between Africa and Europe. With the aim of verifying relative effects of dust outbreaks, sampling period and sampling site, on the airborne bacterial community composition, we compared air collected during dust-carrying meteorological events to that coming from wind regimes not associated to long-distance particle lifting. Results indicated that: (a) a higher microbial diversity (118 orders vs 65) and increased community evenness were observed in the campaign carried out in September in comparison to the one in May, irrespective of the place of collection and of the presence or absence of dust outbreaks. (b) During the period of standard wind regimes without transcontinental outbreaks a synchronous, concerted succession of bacterial communities across distant locations of the same island, accompanied as mentioned by a parallel rise in bacterial diversity and community evenness appears to have occurred. (c) changes in wind provenance could transiently change community composition in the locality placed on the coast facing the incoming wind, but not in the one located at the opposite side of the island; for this reason the community changes brought from dust outbreaks of African origin are observed only in the sampling station exposed to south; (d) the same winds, once proceeding over land appear to uplift bacteria belonging to a common core already present over the region, which dilute or replace those that were associated with the air coming from the sea or conveyed by the dust particulate, explaining the two prior points. (e) the hierarchy of the variables tested in determining bacterial assemblages composition results: sampling period >> ongoing meteorological events > sampling location within the island.