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Your search keyword '"Freise, Amanda C."' showing total 7 results
Start Over Author "Freise, Amanda C." Publisher cold spring harbor laboratory
7 results on '"Freise, Amanda C."'

1. Characterization of Genomic Diversity In Bacteriophages InfectingRhodococcus

Author

Garza, Dominic R., primary, Di Blasi, Daria, additional, Bruns, James A., additional, Empson, Brianna, additional, Light, Isabel, additional, Ghannam, Maisam, additional, Castillo, Salvador, additional, Quijada, Britney, additional, Zorawik, Michelle, additional, Garcia-Vedrenne, Ana E., additional, and Freise, Amanda C., additional

Published
2022
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2. Exploring Genomic Conservation in Actinobacteriophages with Small Genomes

Author

Tse, Vincent Y., primary, Liu, Haoyuan, additional, Kapinos, Andrew, additional, Torres, Canela, additional, Cayabyab, Breanna Camille S., additional, Fett, Sarah N., additional, Nakashima, Lucy G., additional, Rahman, Mujtahid, additional, Vargas, Aida S., additional, Reddi, Krisanavane, additional, Parker, Jordan Moberg, additional, and Freise, Amanda C., additional

Published
2022
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3. Characterization of novel Actinobacteriophage Giantsbane reveals potential genomic recombination hotspot and unexpected intra-cluster similarities

Author

Liu, Christopher, Chen, Pei Ying, Dang, Preston, Zhang, Michael, Kapinos, Andrew, Ngo, Ryan, Parker, Jordan Moberg, and Freise, Amanda C.

Abstract

Bacteriophages that infect Arthrobacter , a genus of bacteria which play key ecological roles in soil, warrant further study. A novel Actinobacteriophage, Giantsbane, was isolated on Arthrobacter globiformis and purified. Particle stability was tested at various temperatures and salinity concentrations by observing titer differences; unpaired Student’s t-tests revealed these differences to be insignificant. Transmission electron microscopy and Illumina whole-genome sequencing revealed that Giantsbane’s morphology and genome length, respectively, were characteristic of Siphoviridae phages. 94 putative open reading frames were determined using Glimmer, GeneMark, and manual review; none were associated with lysogeny. Giantsbane was placed into phage cluster AU, and SplitsTree and batch ANI analyses revealed similarities with other AU phages. The annotated genome was further analyzed using Phamerator and MEME-Suite, which identified repeated motifs present in several other phages. These findings help further our understanding of the physiological and genomic aspects of phage biology.

Published
2020
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5. Novel Cluster AZArthrobacterphages Powerpuff, Lego, and YesChef exhibit close functional relationships withMicrobacteriumphages

Author

Kapinos, Andrew, primary, Aghamalian, Pauline, additional, Capehart, Erika, additional, Alag, Anya, additional, Angel, Heather, additional, Briseno, Eddie, additional, Farag, Emily, additional, Foster, Hilory, additional, Hakim, Abbas, additional, Hernandez-Casas, Daisy, additional, Huang, Calvin, additional, Lam, Derek, additional, Mendez, Maya, additional, Min, Ashley, additional, Nguyen, Nikki, additional, Ortiz, Emily, additional, Saldivar, Lizbeth Shelly, additional, Shannon, Jack Arthur, additional, Smith, Rachel, additional, Sridhar, Mihika V., additional, Ta, An, additional, Theophilus, Malavika C., additional, Ngo, Ryan, additional, Torres, Canela, additional, Reddi, Krisanavane, additional, Freise, Amanda C., additional, and Parker, Jordan Moberg, additional

Published
2020
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