29 results on '"Wang, Zhi-Yong"'
Search Results
2. Immunophilin-like FKBP42/TWISTED DWARF1 Interacts with the Receptor Kinase BRI1 to Regulate Brassinosteroid Signaling in Arabidopsis.
- Author
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Chaiwanon, Juthamas, Garcia, Veder J., Cartwright, Heather, Sun, Ying, and Wang, Zhi-Yong
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ARABIDOPSIS ,MOLECULAR structure of carrier proteins - Abstract
Mutation of the immunophilin-like FK506-binding protein TWISTED DWARF1 (FKBP42/TWD1) causes dwarf and twisted-organ phenotypes in Arabidopsis . However, the function of FKBP42 is not fully understood at the molecular level. Using genetic, physiological, and immunological experiments, we show here that FKBP42/TWD1 is necessary for brassinosteroid (BR) signal transduction. The twd1 mutant showed reduced BR sensitivity in growth responses and activation of the BZR1 transcription factor. However, twd1 showed normal responses to an inhibitor of BIN2/GSK3, suggesting that twd1 has a defect upstream of BIN2 in the BR signaling pathway. In vitro and in vivo assays showed that TWD1 interacts physically with the kinase domains of the BR receptor kinases BRI1 and BAK1. TWD1 is not required for normal localization of BRI1-GFP to the plasma membrane or for activation of the flagellin receptor kinase FLS2. Our results suggest that FKBP42/TWD1 plays a specific role in the activation of BRI1 receptor kinase. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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3. Oligomerization between BSU1 Family Members Potentiates Brassinosteroid Signaling in Arabidopsis.
- Author
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Kim, Eun-Ji, Youn, Ji-Hyun, Park, Chan-Ho, Kim, Tae-Woo, Guan, Shenheng, Xu, Shouling, Burlingame, Alma L., Kim, Young-Pil, Kim, Seong-Ki, Wang, Zhi-Yong, and Kim, Tae-Wuk
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OLIGOMERIZATION ,BRASSINOSTEROIDS ,ARABIDOPSIS - Abstract
The article discusses a study which examined the effect of the oligomerization between BSU1 family members on brassinosteroid signaling in Arabidopsis.
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- 2016
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4. The Brassinosteroid-Activated BRI1 Receptor Kinase Is Switched off by Dephosphorylation Mediated by Cytoplasm-Localized PP2A B′ Subunits.
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Wang, Ruiju, Liu, Mengmeng, Yuan, Min, Oses-Prieto, Juan A., Cai, Xingbo, Sun, Ying, Burlingame, Alma L., Wang, Zhi-Yong, and Tang, Wenqiang
- Subjects
BRASSINOSTEROIDS ,PHOSPHATASES ,DEPHOSPHORYLATION - Abstract
Brassinosteroid (BR) binding activates the receptor kinase BRI1 by inducing heterodimerization with its co-receptor kinase BAK1; however, the mechanisms that reversibly inactivate BRI1 remain unclear. Here we show that cytoplasm-localized protein phosphatase 2A (PP2A) B′ regulatory subunits interact with BRI1 to mediate its dephosphorylation and inactivation. Loss-of-function and overexpression experiments showed that a group of PP2A B′ regulatory subunits, represented by B′η, negatively regulate BR signaling by decreasing BRI1 phosphorylation. BR increases the expression levels of these B′ subunits, and B′η interacts preferentially with phosphorylated BRI1, suggesting that the dynamics of BR signaling are modulated by the PP2A-mediated feedback inactivation of BRI1. Compared with PP2A B′α and B′β, which promote BR responses by dephosphorylating the downstream transcription factor BZR1, the BRI1-inactivating B′ subunits showed similar binding to BRI1 and BZR1 but distinct subcellular localization. Alteration of the nuclear/cytoplasmic localization of the B′ subunits revealed that cytoplasmic PP2A dephosphorylates BRI1 and inhibits the BR response, whereas nuclear PP2A dephosphorylates BZR1 and activates the BR response. Our findings not only identify the PP2A regulatory B subunits that mediate the binding and dephosphorylation of BRI1, but also demonstrate that the subcellular localization of PP2A specifies its substrate selection and distinct effects on BR signaling. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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5. Constitutive expression of the circadian clock associated...
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Wang, Zhi-Yong and Tobin, Elaine M.
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CIRCADIAN rhythms , *PLANTS , *PHOTORECEPTORS - Abstract
Focuses on a study which examined the circadian clock associated 1 (CCA1) gene that encodes a MYB-related transcription factor involved in the phytochrome induction of a light harvesting chlorophyll a/b-protein (Lhcb) gene. Background information on photoreceptors and circadian clocks of plants; Processes in plants that shows circadian rhythm; Results of the study.
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- 1998
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6. At the Intersection of Plant Growth and Immunity.
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Wang, Wenfei and Wang, Zhi-Yong
- Abstract
The tradeoff between growth and immunity is regulated by integrating hormonal cues, biotic signals, and developmental programs, and is fine-tuned to maximize organismal growth and survival. Four recent papers, including Chandran et al. (2014) in this issue of Cell Host & Microbe, provide insights into the underlying mechanisms in plants. [Copyright &y& Elsevier]
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- 2014
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7. TOR Signaling Promotes Accumulation of BZR1 to Balance Growth with Carbon Availability in Arabidopsis.
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Zhang, Zhenzhen, Zhu, Jia-Ying, Roh, Jeehee, Marchive, Chloé, Kim, Seong-Ki, Meyer, Christian, Sun, Yu, Wang, Wenfei, and Wang, Zhi-Yong
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TOR proteins , *ARABIDOPSIS , *GROWTH factors , *HOMEOSTASIS , *RNA interference , *MAMMALS - Abstract
Summary For maintenance of cellular homeostasis, the actions of growth-promoting hormones must be attenuated when nutrient and energy become limiting. The molecular mechanisms that coordinate hormone-dependent growth responses with nutrient availability remain poorly understood in plants [ 1, 2 ]. The target of rapamycin (TOR) kinase is an evolutionarily conserved master regulator that integrates nutrient and energy signaling to regulate growth and homeostasis in both animals and plants [ 3–7 ]. Here, we show that sugar signaling through TOR controls the accumulation of the brassinosteroid (BR)-signaling transcription factor BZR1, which is essential for growth promotion by multiple hormonal and environmental signals [ 8–11 ]. Starvation, caused by shifting of light-grown Arabidopsis seedlings into darkness, as well as inhibition of TOR by inducible RNAi, led to plant growth arrest and reduced expression of BR-responsive genes. The growth arrest caused by TOR inactivation was partially recovered by BR treatment and the gain-of-function mutation bzr1-1D , which causes accumulation of active forms of BZR1 [ 12 ]. Exogenous sugar promoted BZR1 accumulation and seedling growth, but such sugar effects were largely abolished by inactivation of TOR, whereas the effect of TOR inactivation on BZR1 degradation is abolished by inhibition of autophagy and by the bzr1-1D mutation. These results indicate that cellular starvation leads sequentially to TOR inactivation, autophagy, and BZR1 degradation. Such regulation of BZR1 accumulation by glucose-TOR signaling allows carbon availability to control the growth promotion hormonal programs, ensuring supply-demand balance in plant growth. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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8. Information Integration and Communication in Plant Growth Regulation.
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Chaiwanon, Juthamas, Wang, Wenfei, Zhu, Jia-Ying, Oh, Eunkyoo, and Wang, Zhi-Yong
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PLANT growth regulation , *CELL communication , *SESSILE organisms , *SPATIOTEMPORAL processes , *PLANT adaptation - Abstract
Plants are equipped with the capacity to respond to a large number of diverse signals, both internal ones and those emanating from the environment, that are critical to their survival and adaption as sessile organisms. These signals need to be integrated through highly structured intracellular networks to ensure coherent cellular responses, and in addition, spatiotemporal actions of hormones and peptides both orchestrate local cell differentiation and coordinate growth and physiology over long distances. Further, signal interactions and signaling outputs vary significantly with developmental context. This review discusses our current understanding of the integrated intracellular and intercellular signaling networks that control plant growth. [ABSTRACT FROM AUTHOR]
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- 2016
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9. The receptor kinase OsWAK11 monitors cell wall pectin changes to fine-tune brassinosteroid signaling and regulate cell elongation in rice.
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Yue, Zhi-Liang, Liu, Ning, Deng, Zhi-Ping, Zhang, Yu, Wu, Zhi-Ming, Zhao, Ji-Long, Sun, Ying, Wang, Zhi-Yong, and Zhang, Sheng-Wei
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PECTINS , *CELL communication , *PLANT cell walls , *CELLULAR control mechanisms , *REGULATION of growth , *RICE - Abstract
Rates of plant cell elongation change with day-night alternation, reflecting differences in metabolism related to cell wall remodeling. Information from cell wall surveillance pathways must be integrated with growth regulation pathways to provide feedback regulation of cell wall modification; such feedback regulation is important to ensure sufficient strength and prevent rupture of the cell wall during growth. Several lines of evidence suggest that cell wall perturbations often influence phytohormone signaling, but the identity of the nexus between these two processes remained elusive. Here, we show that wall-associated kinase11 (OsWAK11) acts as a linker connecting cell wall pectin methyl-esterification changes and brassinosteroid (BR) signaling in rice. Our data show that OsWAK11 controls several important agronomical traits by regulating cell elongation in rice. OsWAK11 directly binds and phosphorylates the BR receptor OsBRI1 at residue Thr752, within a motif conserved across most monocot graminaceous crops, thus hindering OsBRI1 interaction with its co-receptor OsSERK1/OsBAK1 and inhibiting BR signaling. The extracellular domain of OsWAK11 shows a much stronger interaction toward methyl-esterified pectin as compared with de-methyl-esterified pectin. OsWAK11 is stabilized in light but is degraded in darkness, in a process triggered by changes in the ratio of methyl-esterified to de-methyl-esterified pectin, creating fluctuations in plant BR signaling in response to day and night alternation. We conclude that OsWAK11 is a cell wall monitor that regulates cell elongation rates to adapt to the environment from the outside in, which complements the well-established inside-out signaling pathway affecting cell elongation in plants. • OsWAK11 regulates brassinosteroid signaling and plant growth • OsWAK11 phosphorylates OsBRI1 at a conserved motif across most monocots • OsWAK11 tends to bind methyl-esterified pectin • OsWAK11 responds to pectin methyl-esterification changes In this study, Yue et al. show that the receptor-like kinase OsWAK11 monitors pectin methyl-esterification changes in the plant cell wall to directly phosphorylate and fine-tune the activity of the brassinosteroid phytohormone receptor OsBRI1, achieving dynamic growth in response to light changes. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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10. The CDG1 Kinase Mediates Brassinosteroid Signal Transduction from BRI1 Receptor Kinase to BSU1 Phosphatase and GSK3-like Kinase BIN2
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Kim, Tae-Wuk, Guan, Shenheng, Burlingame, Alma L., and Wang, Zhi-Yong
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PROTEIN kinases , *BRASSINOSTEROIDS , *CELLULAR signal transduction , *PHOSPHATASES , *CELL membranes , *TRANSCRIPTION factors , *PLANT growth , *PHOSPHORYLATION - Abstract
Summary: The brassinosteroid (BR) signaling pathway includes two receptor-like kinases (BRI1 and BAK1), a plasma membrane-associated kinase (BSK1), two phosphatases (BSU1 and PP2A), a GSK3-like kinase (BIN2), and two homologous transcription factors (BZR1 and BES1/BZR2). But the mechanisms of signal relay are not fully understood. Here, we show that a receptor-like cytoplasmic kinase named CDG1 mediates signal transduction from BRI1 to BSU1. Transgenic experiments confirm that CDG1 and its homolog CDL1 positively regulate BR signaling and plant growth. Mass spectrometry analysis identified BRI1 phosphorylation sites in CDG1 and CDG1 phosphorylation sites in BSU1. Mutations of these phosphorylation sites compromised the BR signaling functions. The results demonstrate that BRI1 phosphorylates S234 to activate CDG1 kinase, and CDG1 in turn phosphorylates S764 to activate BSU1, which inactivates BIN2 by dephosphorylating Y200 of BIN2. This study thus demonstrates a complete phosphorylation/dephosphorylation cascade linking a steroid-activated receptor kinase to a GSK3-like kinase in plants. [ABSTRACT FROM AUTHOR]
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- 2011
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11. PIN-LIKES Coordinate Brassinosteroid Signaling with Nuclear Auxin Input in Arabidopsis thaliana.
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Sun, Lin, Feraru, Elena, Feraru, Mugurel I., Waidmann, Sascha, Wang, Wenfei, Passaia, Gisele, Wang, Zhi-Yong, Wabnik, Krzysztof, and Kleine-Vehn, Jürgen
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ARABIDOPSIS thaliana , *AUXIN , *ENDOPLASMIC reticulum , *PLANT development , *GROWTH regulators , *GENETIC testing - Abstract
Auxin and brassinosteroids (BR) are crucial growth regulators and display overlapping functions during plant development. Here, we reveal an alternative phytohormone crosstalk mechanism, revealing that BR signaling controls PIN-LIKES (PILS)-dependent nuclear abundance of auxin. We performed a forward genetic screen for imperial pils (imp) mutants that enhance the overexpression phenotypes of PILS5 putative intracellular auxin transport facilitator. Here, we report that the imp1 mutant is defective in the BR-receptor BRASSINOSTEROID INSENSITIVE 1 (BRI1). Our set of data reveals that BR signaling transcriptionally and post-translationally represses the accumulation of PILS proteins at the endoplasmic reticulum, thereby increasing nuclear abundance and signaling of auxin. We demonstrate that this alternative phytohormonal crosstalk mechanism integrates BR signaling into auxin-dependent organ growth rates and likely has widespread importance for plant development. • Impaired BR perception enhances PILS5 overexpression phenotypes • BR signaling increases PILS protein turnover • BR signaling defines PILS-dependent nuclear abundance and signaling of auxin • PILS-dependent BR-auxin crosstalk affects organ growth Sun et al. reveal that BR signaling limits the accumulation of PILS proteins at the endoplasmic reticulum, thereby increasing nuclear abundance and signaling of auxin. This alternative phytohormonal crosstalk mechanism integrates BR signaling into auxin-dependent organ growth rates and likely has widespread importance for plant development. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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12. The F-box Protein KIB1 Mediates Brassinosteroid-Induced Inactivation and Degradation of GSK3-like Kinases in Arabidopsis.
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Zhu, Jia-Ying, Li, Yuyao, Cao, Dong-Mei, Yang, Hongjuan, Oh, Eunkyoo, Bi, Yang, Zhu, Shengwei, and Wang, Zhi-Yong
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BRASSINOSTEROIDS , *GLYCOGEN synthase kinase-3 , *KINASES , *ARABIDOPSIS , *EUKARYOTES , *UBIQUITIN , *PHENOTYPES - Abstract
Summary The glycogen synthase kinase-3 (GSK3) family kinases are central cellular regulators highly conserved in all eukaryotes. In Arabidopsis , the GSK3-like kinase BIN2 phosphorylates a range of proteins to control broad developmental processes, and BIN2 is degraded through unknown mechanism upon receptor kinase-mediated brassinosteroid (BR) signaling. Here we identify KIB1 as an F-box E3 ubiquitin ligase that promotes the degradation of BIN2 while blocking its substrate access. Loss-of-function mutations of KIB1 and its homologs abolished BR-induced BIN2 degradation and caused severe BR-insensitive phenotypes. KIB1 directly interacted with BIN2 in a BR-dependent manner and promoted BIN2 ubiquitination in vitro. Expression of an F-box-truncated KIB1 caused BIN2 accumulation but dephosphorylation of its substrate BZR1 and activation of BR responses because KIB1 blocked BIN2 binding to BZR1. Our study demonstrates that KIB1 plays an essential role in BR signaling by inhibiting BIN2 through dual mechanisms of blocking substrate access and promoting degradation. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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13. Photoregulatory protein kinases fine-tune plant photomorphogenesis by directing a bifunctional phospho-code on HY5 in Arabidopsis.
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Zhang N, Wei CQ, Xu DJ, Deng ZP, Zhao YC, Ai LF, Sun Y, Wang ZY, and Zhang SW
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- Phosphorylation, Ubiquitin-Protein Ligases metabolism, Ubiquitin-Protein Ligases genetics, Nuclear Proteins metabolism, Nuclear Proteins genetics, Morphogenesis radiation effects, Protein Kinases metabolism, Protein Kinases genetics, Repressor Proteins, Arabidopsis Proteins metabolism, Arabidopsis Proteins genetics, Arabidopsis metabolism, Arabidopsis growth & development, Arabidopsis genetics, Basic-Leucine Zipper Transcription Factors metabolism, Basic-Leucine Zipper Transcription Factors genetics, Gene Expression Regulation, Plant, Light
- Abstract
Photomorphogenesis is a light-dependent plant growth and development program. As the core regulator of photomorphogenesis, ELONGATED HYPOCOTYL 5 (HY5) is affected by dynamic changes in its transcriptional activity and protein stability; however, little is known about the mediators of these processes. Here, we identified PHOTOREGULATORY PROTEIN KINASE 1 (PPK1), which interacts with and phosphorylates HY5 in Arabidopsis, as one such mediator. The phosphorylation of HY5 by PPK1 is essential to establish high-affinity binding with B-BOX PROTEIN 24 (BBX24) and CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1), which inhibit the transcriptional activity and promote the degradation of HY5, respectively. As such, PPKs regulate not only the binding of HY5 to its target genes under light conditions but also HY5 degradation when plants are transferred from light to dark. Our data identify a PPK-mediated phospho-code on HY5 that integrates the molecular mechanisms underlying the regulation of HY5 to precisely control plant photomorphogenesis., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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14. The BAS chromatin remodeler determines brassinosteroid-induced transcriptional activation and plant growth in Arabidopsis.
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Zhu T, Wei C, Yu Y, Zhang Z, Zhu J, Liang Z, Song X, Fu W, Cui Y, Wang ZY, and Li C
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- Brassinosteroids metabolism, Chromatin genetics, Chromatin metabolism, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Transcriptional Activation, Nuclear Proteins genetics, Nuclear Proteins metabolism, Gene Expression Regulation, Plant, Arabidopsis metabolism, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism
- Abstract
Brassinosteroid (BR) signaling leads to the nuclear accumulation of the BRASSINAZOLE-RESISTANT 1 (BZR1) transcription factor, which plays dual roles in activating or repressing the expression of thousands of genes. BZR1 represses gene expression by recruiting histone deacetylases, but how it activates transcription of BR-induced genes remains unclear. Here, we show that BR reshapes the genome-wide chromatin accessibility landscape, increasing the accessibility of BR-induced genes and reducing the accessibility of BR-repressed genes in Arabidopsis. BZR1 physically interacts with the BRAHMA-associated SWI/SNF (BAS)-chromatin-remodeling complex on the genome and selectively recruits the BAS complex to BR-activated genes. Depletion of BAS abrogates the capacities of BZR1 to increase chromatin accessibility, activate gene expression, and promote cell elongation without affecting BZR1's ability to reduce chromatin accessibility and expression of BR-repressed genes. Together, these data identify that BZR1 recruits the BAS complex to open chromatin and to mediate BR-induced transcriptional activation of growth-promoting genes., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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15. CTLA-4 blockade induces tumor pyroptosis via CD8 + T cells in head and neck squamous cell carcinoma.
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Wang S, Wu ZZ, Zhu SW, Wan SC, Zhang MJ, Zhang BX, Yang QC, Xiao Y, Li H, Mao L, Wang ZY, Gutkind JS, and Sun ZJ
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- Mice, Animals, Squamous Cell Carcinoma of Head and Neck therapy, Squamous Cell Carcinoma of Head and Neck metabolism, CTLA-4 Antigen, Tumor Necrosis Factor-alpha metabolism, Pyroptosis, Gasdermins, Cytokines metabolism, Interferon-gamma metabolism, Tumor Microenvironment, CD8-Positive T-Lymphocytes, Head and Neck Neoplasms metabolism
- Abstract
Immune checkpoint blockade (ICB) treatment has demonstrated excellent medical effects in oncology, and it is one of the most sought after immunotherapies for tumors. However, there are several issues with ICB therapy, including low response rates and a lack of effective efficacy predictors. Gasdermin-mediated pyroptosis is a typical inflammatory death mode. We discovered that increased expression of gasdermin protein was linked to a favorable tumor immune microenvironment and prognosis in head and neck squamous cell carcinoma (HNSCC). We used the mouse HNSCC cell lines 4MOSC1 (responsive to CTLA-4 blockade) and 4MOSC2 (resistant to CTLA-4 blockade) orthotopic models and demonstrated that CTLA-4 blockade treatment induced gasdermin-mediated pyroptosis of tumor cells, and gasdermin expression positively correlated to the effectiveness of CTLA-4 blockade treatment. We found that CTLA-4 blockade activated CD8
+ T cells and increased the levels of interferon γ (IFN-γ) and tumor necrosis factor α (TNF-α) cytokines in the tumor microenvironment. These cytokines synergistically activated the STAT1/IRF1 axis to trigger tumor cell pyroptosis and the release of large amounts of inflammatory substances and chemokines. Collectively, our findings revealed that CTLA-4 blockade triggered tumor cells pyroptosis via the release of IFN-γ and TNF-α from activated CD8+ T cells, providing a new perspective of ICB., Competing Interests: Declaration of interests No potential conflicts of interest were disclosed., (Copyright © 2023 The American Society of Gene and Cell Therapy. Published by Elsevier Inc. All rights reserved.)- Published
- 2023
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16. Activation of TOR signaling by diverse nitrogen signals in plants.
- Author
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Tulin F, Zhang Z, and Wang ZY
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- Plant Leaves metabolism, Plants metabolism, TOR Serine-Threonine Kinases metabolism, Nitrogen, Signal Transduction
- Abstract
Growth control in eukaryotes depends on the TOR kinase, which integrates energy and nutrient signals. In this issue of Developmental Cell, Liu et al. demonstrate that, in plants, inorganic nitrogen and amino acids activate TOR via the GTPase ROP2 to promote cell proliferation and leaf growth in the shoot., Competing Interests: Declaration of interests The authors declare no competing interests. Z.-Y.W. is a professor by courtesy at Stanford University., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
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17. Spatiotemporal brassinosteroid signaling and antagonism with auxin pattern stem cell dynamics in Arabidopsis roots.
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Chaiwanon J and Wang ZY
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- Arabidopsis cytology, Arabidopsis growth & development, Arabidopsis Proteins genetics, DNA-Binding Proteins, Gene Expression Regulation, Plant genetics, Plant Development, Plant Roots growth & development, Plant Roots metabolism, Signal Transduction genetics, Stem Cells physiology, Arabidopsis Proteins metabolism, Brassinosteroids metabolism, Indoleacetic Acids metabolism, Nuclear Proteins metabolism, Plant Roots cytology, Stem Cells cytology
- Abstract
The spatiotemporal balance between stem cell maintenance, proliferation, and differentiation determines the rate of root growth and is controlled by hormones, including auxin and brassinosteroid (BR). However, the spatial actions of BR and its interactions with auxin remain unclear in roots. Here, we show that oppositely patterned and antagonistic actions of BR and auxin maintain the stem cell balance and optimal root growth. We discover a pattern of low levels of nuclear-localized BR-activated transcription factor BZR1 in the stem cell niche and high BZR1 levels in the transition-elongation zone. This BZR1 pattern requires local BR catabolism and auxin synthesis, as well as BR signaling. Cell-type-specific expression of a constitutively active form of BZR1 confirms that the high and low levels of BZR1 are required for the normal cell behaviors in the elongation zone and quiescent center (QC), respectively. Comparison between BR-responsive, BZR1-targeted, auxin-responsive, and developmental zone-specific transcriptomes indicates that BZR1 mostly activates its target genes expressed in the transition-elongation zone, but represses genes in the QC and surrounding stem cells, and that BR and auxin have overall opposite effects on gene expression. Genetic and physiological interactions support that a balance between the antagonistic actions of BR and auxin is required for optimal root growth. These results demonstrate that the level and output specificity of BR signaling are spatially patterned and that, in contrast to their synergism in shoots, BR and auxin interact antagonistically in roots to control the spatiotemporal balance of stem cell dynamics required for optimal root growth., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2015
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18. New insights into aluminum tolerance in rice: the ASR5 protein binds the STAR1 promoter and other aluminum-responsive genes.
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Arenhart RA, Bai Y, de Oliveira LF, Neto LB, Schunemann M, Maraschin Fdos S, Mariath J, Silverio A, Sachetto-Martins G, Margis R, Wang ZY, and Margis-Pinheiro M
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- Gene Expression Regulation, Plant drug effects, Gene Expression Regulation, Plant genetics, Plant Proteins genetics, Protein Binding drug effects, Protein Binding genetics, Aluminum toxicity, Oryza drug effects, Oryza metabolism, Plant Proteins metabolism, Promoter Regions, Genetic genetics
- Abstract
Aluminum (Al) toxicity in plants is one of the primary constraints in crop production. Al³⁺, the most toxic form of Al, is released into soil under acidic conditions and causes extensive damage to plants, especially in the roots. In rice, Al tolerance requires the ASR5 gene, but the molecular function of ASR5 has remained unknown. Here, we perform genome-wide analyses to identify ASR5-dependent Al-responsive genes in rice. Based on ASR5_RNAi silencing in plants, a global transcriptome analysis identified a total of 961 genes that were responsive to Al treatment in wild-type rice roots. Of these genes, 909 did not respond to Al in the ASR5_RNAi plants, indicating a central role for ASR5 in Al-responsive gene expression. Under normal conditions, without Al treatment, the ASR5_RNAi plants expressed 1.756 genes differentially compared to the wild-type plants, and 446 of these genes responded to Al treatment in the wild-type plants. Chromatin immunoprecipitation followed by deep sequencing identified 104 putative target genes that were directly regulated by ASR5 binding to their promoters, including the STAR1 gene, which encodes an ABC transporter required for Al tolerance. Motif analysis of the binding peak sequences revealed the binding motif for ASR5, which was confirmed via in vitro DNA-binding assays using the STAR1 promoter. These results demonstrate that ASR5 acts as a key transcription factor that is essential for Al-responsive gene expression and Al tolerance in rice.
- Published
- 2014
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19. A brassinosteroid-signaling kinase interacts with multiple receptor-like kinases in Arabidopsis.
- Author
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Xu P, Xu SL, Li ZJ, Tang W, Burlingame AL, and Wang ZY
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- Arabidopsis genetics, Arabidopsis metabolism, Arabidopsis Proteins genetics, Brassinosteroids metabolism, Protein Binding, Protein Serine-Threonine Kinases genetics, Signal Transduction, Arabidopsis enzymology, Arabidopsis Proteins metabolism, Protein Serine-Threonine Kinases metabolism
- Published
- 2014
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20. BR signal influences Arabidopsis ovule and seed number through regulating related genes expression by BZR1.
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Huang HY, Jiang WB, Hu YW, Wu P, Zhu JY, Liang WQ, Wang ZY, and Lin WH
- Subjects
- Arabidopsis cytology, Arabidopsis growth & development, Arabidopsis metabolism, Arabidopsis Proteins genetics, DNA-Binding Proteins, Homeodomain Proteins genetics, Homeodomain Proteins metabolism, Mutation, Nuclear Proteins genetics, Phenotype, Phosphorylation, Arabidopsis genetics, Arabidopsis Proteins metabolism, Brassinosteroids metabolism, Gene Expression Regulation, Plant, Nuclear Proteins metabolism, Ovule growth & development, Seeds growth & development, Signal Transduction
- Abstract
Ovule and seed developments are crucial processes during plant growth, which are affected by different signaling pathways. In this paper, we demonstrate that the brassinosteroid (BR) signal is involved in ovule initiation and development. Ovule and seed numbers are significantly different when comparing BR-related mutants to wild-type controls. Detailed observation indicates that BR regulates the expression level of genes related to ovule development, including HLL, ANT, and AP2, either directly by targeting the promoter sequences or indirectly via regulation by BR-induced transcription factor BZR1. Also, Western blot demonstrates that the dephosphorylation level of BZR1 is consistent with ovule and seed number. The intragenic bzr1-1D suppressors bzs247 and bzs248 have much fewer ovules and seeds than bzr1-1D, which are similar to wild-type, suggesting that the phenotype can be rescued. The molecular and genetic experiments confirm that BZR1 and AP2 probably affect Arabidopsis ovule number determination antagonistically.
- Published
- 2013
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21. BZS1, a B-box protein, promotes photomorphogenesis downstream of both brassinosteroid and light signaling pathways.
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Fan XY, Sun Y, Cao DM, Bai MY, Luo XM, Yang HJ, Wei CQ, Zhu SW, Sun Y, Chong K, and Wang ZY
- Subjects
- Arabidopsis genetics, Arabidopsis Proteins genetics, Gene Expression Regulation, Plant radiation effects, Genes, Plant genetics, Genes, Suppressor, Morphogenesis genetics, Mutation genetics, Phenotype, Signal Transduction genetics, Transcription Factors genetics, Arabidopsis growth & development, Arabidopsis radiation effects, Arabidopsis Proteins metabolism, Brassinosteroids metabolism, Light, Morphogenesis radiation effects, Signal Transduction radiation effects, Transcription Factors metabolism
- Abstract
Photomorphogenesis is controlled by multiple signaling pathways, including the light and brassinosteroid (BR) pathways. BR signaling activates the BZR1 transcription factor, which is required for suppressing photomorphogenesis in the dark. We identified a suppressor of the BR hypersensitive mutant bzr1-1D and named it bzr1-1D suppressor1-Dominant (bzs1-D). The bzs1-D mutation was caused by overexpression of a B-box zinc finger protein BZS1, which is transcriptionally repressed by BZR1. Overexpression of BZS1 causes de-etiolation in the dark, short hypocotyls in the light, reduced sensitivity to BR treatment, and repression of many BR-activated genes. Knockdown of BZS1 by co-suppression partly suppressed the short hypocotyl phenotypes of BR-deficient or insensitive mutants. These results support that BZS1 is a negative regulator of BR response. BZS1 overexpressors are hypersensitive to different wavelengths of light and loss of function of BZS1 reduces plant sensitivity to light and partly suppresses the constitutive photomorphogenesis 1 (cop1) mutant in the dark, suggesting a positive role in light response. BZS1 protein accumulates at an increased level after light treatment of dark-grown BZS1-OX plants and in the cop1 mutants, and BZS1 interacts with COP1 in vitro, suggesting that light regulates BZS1 through COP1-mediated ubiquitination and proteasomal degradation. These results demonstrate that BZS1 mediates the crosstalk between BR and light pathways.
- Published
- 2012
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22. Interactions between HLH and bHLH factors modulate light-regulated plant development.
- Author
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Hao Y, Oh E, Choi G, Liang Z, and Wang ZY
- Subjects
- Arabidopsis cytology, Arabidopsis genetics, DNA, Plant metabolism, Gibberellins pharmacology, Hypocotyl growth & development, Hypocotyl metabolism, Models, Biological, Morphogenesis drug effects, Morphogenesis radiation effects, Plants, Genetically Modified, Protein Binding drug effects, Protein Binding radiation effects, Temperature, Transcriptional Activation drug effects, Transcriptional Activation genetics, Transcriptional Activation radiation effects, Arabidopsis growth & development, Arabidopsis radiation effects, Arabidopsis Proteins administration & dosage, Arabidopsis Proteins metabolism, Basic Helix-Loop-Helix Transcription Factors administration & dosage, Basic Helix-Loop-Helix Transcription Factors metabolism, Light, Transcription Factors metabolism
- Abstract
Phytochromes (Phy) and phytochrome-interacting factor (PIF) transcription factors constitute a major signaling module that controls plant development in response to red and far-red light. A low red:far-red ratio is interpreted as shading by neighbor plants and induces cell elongation-a phenomenon called shade-avoidance syndrome (SAS). PAR1 and its closest homolog PAR2 are negative regulators of SAS; they belong to the HLH transcription factor family that lacks a typical basic domain required for DNA binding, and they are believed to regulate gene expressions through DNA binding transcription factors that are yet to be identified. Here, we show that light signal stabilizes PAR1 protein and PAR1 interacts with PIF4 and inhibits PIF4-mediated gene activation. DNA pull-down and chromatin immunoprecipitation (ChIP) assays showed that PAR1 inhibits PIF4 DNA binding in vitro and in vivo. Transgenic plants overexpressing PAR1 (PAR1OX) are insensitive to gibberellin (GA) or high temperature in hypocotyl elongation, similarly to the pifq mutant. In addition to PIF4, PAR1 also interacts with PRE1, a HLH transcription factor activated by brassinosteroid (BR) and GA. Overexpression of PRE1 largely suppressed the dwarf phenotype of PAR1OX. These results indicate that PAR1-PRE1 and PAR1-PIF4 heterodimers form a complex HLH/bHLH network regulating cell elongation and plant development in response to light and hormones.
- Published
- 2012
- Full Text
- View/download PDF
23. Proteomics analysis reveals post-translational mechanisms for cold-induced metabolic changes in Arabidopsis.
- Author
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Li T, Xu SL, Oses-Prieto JA, Putil S, Xu P, Wang RJ, Li KH, Maltby DA, An LH, Burlingame AL, Deng ZP, and Wang ZY
- Subjects
- Arabidopsis genetics, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Gene Expression Regulation, Plant genetics, Gene Expression Regulation, Plant physiology, Two-Dimensional Difference Gel Electrophoresis, Arabidopsis metabolism, Cold Temperature, Proteomics methods
- Abstract
Cold-induced changes of gene expression and metabolism are critical for plants to survive freezing. Largely by changing gene expression, exposure to a period of non-freezing low temperatures increases plant tolerance to freezing-a phenomenon known as cold acclimation. Cold also induces rapid metabolic changes, which provide instant protection before temperature drops below freezing point. The molecular mechanisms for such rapid metabolic responses to cold remain largely unknown. Here, we use two-dimensional difference gel electrophoresis (2-D DIGE) analysis of sub-cellular fractions of Arabidopsis thaliana proteome coupled with spot identification by tandem mass spectrometry to identify early cold-responsive proteins in Arabidopsis. These proteins include four enzymes involved in starch degradation, three HSP100 proteins, several proteins in the tricarboxylic acid cycle, and sucrose metabolism. Upon cold treatment, the Disproportionating Enzyme 2 (DPE2), a cytosolic transglucosidase metabolizing maltose to glucose, increased rapidly in the centrifugation pellet fraction and decreased in the soluble fraction. Consistent with cold-induced inactivation of DPE2 enzymatic activity, the dpe2 mutant showed increased freezing tolerance without affecting the C-repeat binding transcription factor (CBF) transcriptional pathway. These results support a model that cold-induced inactivation of DPE2 leads to rapid accumulation of maltose, which is a cold-induced compatible solute that protects cells from freezing damage. This study provides evidence for a key role of rapid post-translational regulation of carbohydrate metabolic enzymes in plant protection against sudden temperature drop.
- Published
- 2011
- Full Text
- View/download PDF
24. Integration of light- and brassinosteroid-signaling pathways by a GATA transcription factor in Arabidopsis.
- Author
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Luo XM, Lin WH, Zhu S, Zhu JY, Sun Y, Fan XY, Cheng M, Hao Y, Oh E, Tian M, Liu L, Zhang M, Xie Q, Chong K, and Wang ZY
- Subjects
- Arabidopsis genetics, Arabidopsis radiation effects, Base Sequence, Binding Sites genetics, DNA Primers genetics, DNA-Binding Proteins, GATA2 Transcription Factor genetics, Gene Expression Regulation, Plant, Genes, Plant, Light, MicroRNAs genetics, Models, Biological, Mutation, Phototrophic Processes genetics, Phototrophic Processes physiology, Phototrophic Processes radiation effects, Plant Growth Regulators metabolism, Plants, Genetically Modified, Promoter Regions, Genetic, RNA, Plant genetics, Signal Transduction, Steroids, Heterocyclic metabolism, Ubiquitin-Protein Ligases metabolism, Arabidopsis metabolism, Arabidopsis Proteins metabolism, GATA2 Transcription Factor metabolism, Nuclear Proteins metabolism
- Abstract
Light and brassinosteroid (BR) antagonistically regulate the developmental switch from etiolation in the dark to photomorphogenesis in the light in plants. Here, we identify GATA2 as a key transcriptional regulator that mediates the crosstalk between BR- and light-signaling pathways. Overexpression of GATA2 causes constitutive photomorphogenesis in the dark, whereas suppression of GATA2 reduces photomorphogenesis caused by light, BR deficiency, or the constitutive photomorphogenesis mutant cop1. Genome profiling and chromatin immunoprecipitation experiments show that GATA2 directly regulates genes that respond to both light and BR. BR represses GATA2 transcription through the BR-activated transcription factor BZR1, whereas light causes accumulation of GATA2 protein and feedback inhibition of GATA2 transcription. Dark-induced proteasomal degradation of GATA2 is dependent on the COP1 E3 ubiquitin ligase, and COP1 can ubiquitinate GATA2 in vitro. This study illustrates a molecular framework for antagonistic regulation of gene expression and seedling photomorphogenesis by BR and light., (Copyright © 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
25. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis.
- Author
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Sun Y, Fan XY, Cao DM, Tang W, He K, Zhu JY, He JX, Bai MY, Zhu S, Oh E, Patil S, Kim TW, Ji H, Wong WH, Rhee SY, and Wang ZY
- Subjects
- Arabidopsis cytology, Arabidopsis genetics, Arabidopsis growth & development, Arabidopsis Proteins genetics, Binding Sites, Chromatin Immunoprecipitation, DNA-Binding Proteins, Genome, Plant, Light, Nuclear Proteins genetics, Oligonucleotide Array Sequence Analysis, Plant Growth Regulators genetics, Plants, Genetically Modified, Transcription Factors genetics, Transcription Factors metabolism, Arabidopsis physiology, Arabidopsis Proteins metabolism, Gene Expression Regulation, Plant, Gene Regulatory Networks, Nuclear Proteins metabolism, Plant Growth Regulators metabolism, Signal Transduction physiology, Steroids metabolism
- Abstract
Brassinosteroids (BRs) regulate a wide range of developmental and physiological processes in plants through a receptor-kinase signaling pathway that controls the BZR transcription factors. Here, we use transcript profiling and chromatin-immunoprecipitation microarray (ChIP-chip) experiments to identify 953 BR-regulated BZR1 target (BRBT) genes. Functional studies of selected BRBTs further demonstrate roles in BR promotion of cell elongation. The BRBT genes reveal numerous molecular links between the BR-signaling pathway and downstream components involved in developmental and physiological processes. Furthermore, the results reveal extensive crosstalk between BR and other hormonal and light-signaling pathways at multiple levels. For example, BZR1 not only controls the expression of many signaling components of other hormonal and light pathways but also coregulates common target genes with light-signaling transcription factors. Our results provide a genomic map of steroid hormone actions in plants that reveals a regulatory network that integrates hormonal and light-signaling pathways for plant growth regulation., (Copyright © 2010 Elsevier Inc. All rights reserved.)
- Published
- 2010
- Full Text
- View/download PDF
26. Chemical genetic dissection of brassinosteroid-ethylene interaction.
- Author
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Gendron JM, Haque A, Gendron N, Chang T, Asami T, and Wang ZY
- Subjects
- Arabidopsis drug effects, Arabidopsis Proteins drug effects, Brassinosteroids, Ethylenes metabolism, Genes, Reporter, Glucuronidase genetics, Hypocotyl drug effects, Hypocotyl genetics, Plant Growth Regulators metabolism, Seedlings drug effects, Seedlings genetics, Arabidopsis genetics, Arabidopsis Proteins genetics, Cholestanols metabolism, Ethylenes pharmacology, Plant Growth Regulators genetics, Steroids, Heterocyclic metabolism
- Abstract
We undertook a chemical genetics screen to identify chemical inhibitors of brassinosteroid (BR) action. From a chemical library of 10,000 small molecules, one compound was found to inhibit hypocotyl length and activate the expression of a BR-repressed reporter gene (CPD::GUS) in Arabidopsis, and it was named brassinopride (BRP). These effects of BRP could be reversed by co-treatment with brassinolide, suggesting that BRP either directly or indirectly inhibits BR biosynthesis. Interestingly, the compound causes exaggerated apical hooks, similar to that caused by ethylene treatment. The BRP-induced apical hook phenotype can be blocked by a chemical inhibitor of ethylene perception or an ethylene-insensitive mutant, suggesting that, in addition to inhibiting BR, BRP activates ethylene response. Analysis of BRP analogs provided clues about structural features important for its effects on two separate targets in the BR and ethylene pathways. Analyses of the responses of various BR and ethylene mutants to BRP, ethylene, and BR treatments revealed modes of cross-talk between ethylene and BR in dark-grown seedlings. Our results suggest that active downstream BR signaling, but not BR synthesis or a BR gradient, is required for ethylene-induced apical hook formation. The BRP-related compounds can be useful tools for manipulating plant growth and studying hormone interactions.
- Published
- 2008
- Full Text
- View/download PDF
27. An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis.
- Author
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Gampala SS, Kim TW, He JX, Tang W, Deng Z, Bai MY, Guan S, Lalonde S, Sun Y, Gendron JM, Chen H, Shibagaki N, Ferl RJ, Ehrhardt D, Chong K, Burlingame AL, and Wang ZY
- Subjects
- Amino Acid Sequence, Arabidopsis drug effects, Arabidopsis Proteins chemistry, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Binding Sites, Cell Nucleus drug effects, Cell Nucleus metabolism, DNA, Plant metabolism, DNA-Binding Proteins, Down-Regulation drug effects, Models, Biological, Molecular Sequence Data, Mutation genetics, Nuclear Proteins chemistry, Nuclear Proteins genetics, Nuclear Proteins metabolism, Phosphorylation drug effects, Plant Leaves cytology, Plant Leaves drug effects, Protein Binding drug effects, Protein Kinases metabolism, Protein Transport drug effects, Steroids, Heterocyclic pharmacology, 14-3-3 Proteins metabolism, Arabidopsis metabolism, Signal Transduction drug effects, Steroids, Heterocyclic metabolism
- Abstract
Brassinosteroids (BRs) are essential hormones for plant growth and development. BRs regulate gene expression by inducing dephosphorylation of two key transcription factors, BZR1 and BZR2/BES1, through a signal transduction pathway that involves cell-surface receptors (BRI1 and BAK1) and a GSK3 kinase (BIN2). How BR-regulated phosphorylation controls the activities of BZR1/BZR2 is not fully understood. Here, we show that BIN2-catalyzed phosphorylation of BZR1/BZR2 not only inhibits DNA binding, but also promotes binding to the 14-3-3 proteins. Mutations of a BIN2-phosphorylation site in BZR1 abolish 14-3-3 binding and lead to increased nuclear localization of BZR1 protein and enhanced BR responses in transgenic plants. Further, BR deficiency increases cytoplasmic localization, and BR treatment induces rapid nuclear localization of BZR1/BZR2. Thus, 14-3-3 binding is required for efficient inhibition of phosphorylated BR transcription factors, largely through cytoplasmic retention. This study demonstrates that multiple mechanisms are required for BR regulation of gene expression and plant growth.
- Published
- 2007
- Full Text
- View/download PDF
28. BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation.
- Author
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Yin Y, Wang ZY, Mora-Garcia S, Li J, Yoshida S, Asami T, and Chory J
- Subjects
- Amino Acid Sequence genetics, Arabidopsis genetics, Arabidopsis metabolism, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Cell Nucleus genetics, DNA-Binding Proteins, Down-Regulation genetics, Molecular Sequence Data, Mutation genetics, Nuclear Proteins genetics, Nuclear Proteins metabolism, Plant Stems genetics, Plant Stems metabolism, Protein Kinases genetics, Protein Kinases metabolism, Up-Regulation genetics, Arabidopsis growth & development, Arabidopsis Proteins isolation & purification, Cell Differentiation genetics, Cell Nucleus metabolism, Gene Expression Regulation, Plant genetics, Nuclear Proteins isolation & purification, Phytosterols metabolism, Plant Stems growth & development
- Abstract
Plant steroid hormones, known as brassinosteroids (BRs), signal through a plasma membrane localized receptor kinase BRI1. We identified bes1, a semidominant suppressor of bri1, which exhibits constitutive BR response phenotypes including long and bending petioles, curly leaves, accelerated senescence, and constitutive expression of BR-response genes. BES1 accumulates in the nucleus in response to BRs. BES1 is phosphorylated and appears to be destabilized by the glycogen synthase kinase-3 (GSK-3) BIN2, a negative regulator of the BR pathway. These results establish a signaling cascade for BRs with similarities to the Wnt pathway, in which signaling through cell surface receptors leads to inactivation of a GSK-3 allowing accumulation of a nuclear protein that regulates target gene expression.
- Published
- 2002
- Full Text
- View/download PDF
29. Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis.
- Author
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Wang ZY, Nakano T, Gendron J, He J, Chen M, Vafeados D, Yang Y, Fujioka S, Yoshida S, Asami T, and Chory J
- Subjects
- Arabidopsis metabolism, Cell Nucleus metabolism, DNA-Binding Proteins, Feedback, Physiological physiology, Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant, Hypocotyl cytology, Hypocotyl metabolism, Molecular Sequence Data, Mutation physiology, Phenotype, Plant Cells, Plants metabolism, Sequence Homology, Amino Acid, Arabidopsis genetics, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Nuclear Proteins genetics, Nuclear Proteins metabolism, Steroids biosynthesis
- Abstract
Plant steroid hormones, brassinosteroids (BRs), are perceived by a cell surface receptor kinase, BRI1, but how BR binding leads to regulation of gene expression in the nucleus is unknown. Here we describe the identification of BZR1 as a nuclear component of the BR signal transduction pathway. A dominant mutation bzr1-1D suppresses BR-deficient and BR-insensitive (bri1) phenotypes and enhances feedback inhibition of BR biosynthesis. BZR1 protein accumulates in the nucleus of elongating cells of dark-grown hypocotyls and is stabilized by BR signaling and the bzr1-1D mutation. Our results demonstrate that BZR1 is a positive regulator of the BR signaling pathway that mediates both downstream BR responses and feedback regulation of BR biosynthesis.
- Published
- 2002
- Full Text
- View/download PDF
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