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Fagus sylvatica L. is widely distributed across Europe thanks to its high adaptability in a wide variety of soils and climate. Microbial communities are essential for maintaining forest soil quality and are responsible for forest ecosystem functioning; the ability of soil microorganisms to respond to abiotic stressors (e.g., organic carbon losses, water scarcity, temperature changes) is crucial under ongoing environmental changes and also supports tree health. In this study, soil samples were collected from pure beech plots as part of the COST Action project CLIMO to find differences in microbial community characteristics and evaluate the effects of soil properties on microbial communities across gradients of elevation, latitude, and longitude. Positive relationships were found between organic carbon content and both microbial abundance and dehydrogenase activity. Dehydrogenase and catalase activities were elevation-correlated and microbial activities were longitude-correlated. In the most southern beech plot, the microbial community was abundant and displayed high activities. This shows that microbial communities could help tree populations to better adapt to predicted changes in environmental conditions in the future. We suggest that research into forest health and beech performance should also test soil microbial enzymatic activity, particularly under changing climate conditions, to assist in identifying adaptation strategies.