1. Gene panel for Mendelian strokes
- Author
-
Wei Li, Yongjun Wang, Yue Suo, Si Cheng, Fang Fang, Hao Li, Hui Wang, and Zhe Xu
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Heredity ,Genetic counseling ,Genomics ,Computational biology ,Biology ,lcsh:RC346-429 ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,Predictive Value of Tests ,Gene panel ,Protocol ,medicine ,Humans ,Genetic Predisposition to Disease ,Gene ,lcsh:Neurology. Diseases of the nervous system ,Ischemic Stroke ,Genetic testing ,Sanger sequencing ,medicine.diagnostic_test ,Gene Expression Profiling ,Genetic Variation ,High-Throughput Nucleotide Sequencing ,Reproducibility of Results ,stroke ,Pedigree ,030104 developmental biology ,technology ,symbols ,Mendelian inheritance ,Medical genetics ,Neurology (clinical) ,Transcriptome ,Cardiology and Cardiovascular Medicine ,030217 neurology & neurosurgery - Abstract
BackgroundMendelian stroke causes nearly 7% of ischaemic strokes and is also an important aetiology of cryptogenic stroke. Identifying the genetic abnormalities in Mendelian strokes is important as it would facilitate therapeutic management and genetic counselling. Next-generation sequencing makes large-scale sequencing and genetic testing possible.MethodsA systematic literature search was conducted to identify causal genes of Mendelian strokes, which were used to construct a hybridization-based gene capture panel. Genetic variants for target genes were detected using Illumina HiSeq X10 and the Novaseq platform. The sensitivity and specificity were evaluated by comparing the results with Sanger sequencing.Results53 suspected patients of Mendelian strokes were analysed using the panel of 181 causal genes. According to the American College of Medical Genetics and Genomics standard, 16 likely pathogenic/variants of uncertain significance genetic variants were identified. Diagnostic testing was conducted by comparing the consistency between the results of panel and Sanger sequencing. Both the sensitivity and specificity were 100% for the panel.ConclusionThis panel provides an economical, time-saving and labour-saving method to detect causal mutations of Mendelian strokes.
- Published
- 2020