283 results on '"So-won Kim"'
Search Results
2. Gram-negative bacteria and their lipopolysaccharides in Alzheimer’s disease: pathologic roles and therapeutic implications
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Hyeon soo Kim, Sujin Kim, Soo Jung Shin, Yong Ho Park, Yunkwon Nam, Chae won Kim, Kang won Lee, Sung-Min Kim, In Duk Jung, Hyun Duk Yang, Yeong-Min Park, and Minho Moon
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Lipopolysaccharides ,Exotoxin ,Amyloid beta-Peptides ,Cognitive Neuroscience ,Amyloid beta ,Neurodegenerative Diseases ,Lipopolysaccharide ,Review ,Cellular and Molecular Neuroscience ,Alzheimer Disease ,Gram-negative bacteria ,Humans ,Neurology. Diseases of the nervous system ,Neurology (clinical) ,Tau ,RC346-429 ,Alzheimer’s disease - Abstract
Alzheimer’s disease (AD) is the most serious age-related neurodegenerative disease and causes destructive and irreversible cognitive decline. Failures in the development of therapeutics targeting amyloid-β (Aβ) and tau, principal proteins inducing pathology in AD, suggest a paradigm shift towards the development of new therapeutic targets. The gram-negative bacteria and lipopolysaccharides (LPS) are attractive new targets for AD treatment. Surprisingly, an altered distribution of gram-negative bacteria and their LPS has been reported in AD patients. Moreover, gram-negative bacteria and their LPS have been shown to affect a variety of AD-related pathologies, such as Aβ homeostasis, tau pathology, neuroinflammation, and neurodegeneration. Moreover, therapeutic approaches targeting gram-negative bacteria or gram-negative bacterial molecules have significantly alleviated AD-related pathology and cognitive dysfunction. Despite multiple evidence showing that the gram-negative bacteria and their LPS play a crucial role in AD pathogenesis, the pathogenic mechanisms of gram-negative bacteria and their LPS have not been clarified. Here, we summarize the roles and pathomechanisms of gram-negative bacteria and LPS in AD. Furthermore, we discuss the possibility of using gram-negative bacteria and gram-negative bacterial molecules as novel therapeutic targets and new pathological characteristics for AD. Supplementary Information The online version contains supplementary material available at 10.1186/s40035-021-00273-y.
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- 2021
3. Anti-senescence ion-delivering nanocarrier for recovering therapeutic properties of long-term-cultured human adipose-derived stem cells
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Yeong Hwan Kim, Taekyung Yu, Soong Ho Um, Yoon Ki Joung, Yu-Jin Kim, Sung-Won Kim, Ju-Ro Lee, Suk Ho Bhang, and Gwang-Bum Im
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Intracellular ion delivery ,medicine.medical_treatment ,Cell ,Biomedical Engineering ,Ischemic disease ,Pharmaceutical Science ,Medicine (miscellaneous) ,Mice, Nude ,Bioengineering ,Endocytosis ,Senescence ,Applied Microbiology and Biotechnology ,Cell Line ,Paracrine signalling ,Mice ,Drug Delivery Systems ,Tissue engineering ,Downregulation and upregulation ,Functionality restoring ,Medical technology ,medicine ,Animals ,Humans ,R855-855.5 ,Cells, Cultured ,Cell Proliferation ,Ions ,Stem cell therapy ,Drug Carriers ,Mice, Inbred BALB C ,Chemistry ,Research ,Stem Cells ,Cell Differentiation ,Stem-cell therapy ,Cell biology ,medicine.anatomical_structure ,Adipose Tissue ,Cell culture ,Molecular Medicine ,Blood Vessels ,Angiogenesis Inducing Agents ,Angiogenesis ,Stem cell ,Reactive Oxygen Species ,TP248.13-248.65 ,Biotechnology - Abstract
Background Human adipose-derived stem cells (hADSCs) have been used in various fields of tissue engineering because of their promising therapeutic efficacy. However, the stemness of hADSCs cannot be maintained for long durations, and their therapeutic cellular functions, such as paracrine factor secretion decrease during long-term cell culture. To facilitate the use of long-term-cultured hADSCs (L-ADSCs), we designed a novel therapeutic anti-senescence ion-delivering nanocarrier (AIN) that is capable of recovering the therapeutic properties of L-ADSCs. In the present study, we introduced a low-pH-responsive ion nanocarrier capable of delivering transition metal ions that can enhance angiogenic paracrine factor secretion from L-ADSCs. The AINs were delivered to L-ADSCs in an intracellular manner through endocytosis. Results Low pH conditions within the endosomes induced the release of transition metal ions (Fe) into the L-ADSCs that in turn caused a mild elevation in the levels of reactive oxygen species (ROS). This mild elevation in ROS levels induced a downregulation of senescence-related gene expression and an upregulation of stemness-related gene expression. The angiogenic paracrine factor secretion from L-ADSCs was significantly enhanced, and this was evidenced by the observed therapeutic efficacy in response to treatment of a wound-closing mouse model with conditioned medium obtained from AIN-treated L-ADSCs that was similar to that observed in response to treatment with short-term-cultured adipose-derived stem cells. Conclusions This study suggests a novel method and strategy for cell-based tissue regeneration that can overcome the limitations of the low stemness and therapeutic efficacy of stem cells that occurs during long-term cell culture. Graphical Abstract
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- 2021
4. Potential application of human neural crest-derived nasal turbinate stem cells for the treatment of neuropathology and impaired cognition in models of Alzheimer’s disease
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Jung-Min Yon, Jung Yeon Lim, Sin-Soo Jeun, Jung Ho Jeon, Sung Won Kim, Sang In Park, Ho Yong Jung, Hyun Kook Lim, and Soon A Park
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0301 basic medicine ,Genetically modified mouse ,Adult ,Pathology ,medicine.medical_specialty ,Medicine (General) ,Medicine (miscellaneous) ,Morris water navigation task ,Mice, Transgenic ,QD415-436 ,Mesenchymal Stem Cell Transplantation ,Turbinates ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,Biochemistry ,03 medical and health sciences ,Mice ,0302 clinical medicine ,R5-920 ,Cognition ,Alzheimer Disease ,Positron Emission Tomography Computed Tomography ,medicine ,Animals ,Humans ,5 × FAD mice ,Microglia ,business.industry ,Research ,Stem Cells ,Mesenchymal stem cell ,Neural crest ,Cell Biology ,Transplantation ,Disease Models, Animal ,030104 developmental biology ,medicine.anatomical_structure ,Neural Crest ,Molecular Medicine ,Neurogenic property ,Stem cell ,Cell transplantation ,business ,Alzheimer’s disease ,030217 neurology & neurosurgery ,Adult stem cell ,hNTSCs - Abstract
Background Stem cell transplantation is a fascinating therapeutic approach for the treatment of many neurodegenerative disorders; however, clinical trials using stem cells have not been as effective as expected based on preclinical studies. The aim of this study is to validate the hypothesis that human neural crest-derived nasal turbinate stem cells (hNTSCs) are a clinically promising therapeutic source of adult stem cells for the treatment of Alzheimer’s disease (AD). Methods hNTSCs were evaluated in comparison with human bone marrow-derived mesenchymal stem cells (hBM-MSCs) according to the effect of transplantation on AD pathology, including PET/CT neuroimaging, immune status indicated by microglial numbers and autophagic capacity, neuronal survival, and cognition, in a 5 × FAD transgenic mouse model of AD. Results We demonstrated that hNTSCs showed a high proliferative capacity and great neurogenic properties in vitro. Compared with hBM-MSC transplantation, hNTSC transplantation markedly reduced Aβ42 levels and plaque formation in the brains of the 5 × FAD transgenic AD mice on neuroimaging, concomitant with increased survival of hippocampal and cortex neurons. Moreover, hNTSCs strongly modulated immune status by reducing the number of microglia and the expression of the inflammatory cytokine IL-6 and upregulating autophagic capacity at 7 weeks after transplantation in AD models. Notably, compared with transplantation of hBM-MSCs, transplantation of hNTSCs significantly enhanced performance on the Morris water maze, with an increased level of TIMP2, which is necessary for spatial memory in young mice and neurons; this difference could be explained by the high engraftment of hNTSCs after transplantation. Conclusion The reliable evidence provided by these findings reveals a promising therapeutic effect of hNTSCs and indicates a step forward the clinical application of hNTSCs in patients with AD.
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- 2021
5. Immuno-genomic classification of colorectal cancer organoids reveals cancer cells with intrinsic immunogenic properties associated with patient survival
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Eun Jeong Cho, Ji-Hye Oh, Jihye Kim, Hyeonjin Lee, Deokhoon Kim, Daum Jo, Minsuh Kim, Hee Chul Chung, Tae Won Kim, Sun-Hye Lee, Se Jin Jang, Jihun Kim, Chang Sik Yu, Sung-Min Chun, and Chang Ohk Sung
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0301 basic medicine ,Male ,Cancer Research ,Microenvironment ,Colorectal cancer ,Biology ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,RC254-282 ,Mutation ,Research ,Wnt signaling pathway ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,Prognosis ,Phenotype ,Primary tumor ,Survival Analysis ,Immune checkpoint ,Organoids ,030104 developmental biology ,Oncology ,Intrinsic ,Cancer cell ,Cancer research ,HLA-II, Immuno-genomic ,Female ,KRAS ,Gene expression ,Colorectal Neoplasms ,030217 neurology & neurosurgery - Abstract
Background The intrinsic immuno-ge7nomic characteristics of colorectal cancer cells that affect tumor biology and shape the tumor immune microenvironment (TIM) are unclear. Methods We developed a patient-derived colorectal cancer organoid (CCO) model and performed pairwise analysis of 87 CCOs and their matched primary tumors. The TIM type of the primary tumor was classified as immuno-active, immuno-exhausted, or immuno-desert. Results The gene expression profiles, signaling pathways, major oncogenic mutations, and histology of the CCOs recapitulated those of the primary tumors, but not the TIM of primary tumors. Two distinct intrinsic molecular subgroups of highly proliferative and mesenchymal phenotypes with clinical significance were identified in CCOs with various cancer signaling pathways. CCOs showed variable expression of cancer-specific immune-related genes such as those encoding HLA-I and HLA-II, and molecules involved in immune checkpoint activation/inhibition. Among these genes, the expression of HLA-II in CCOs was associated with favorable patient survival. K-means clustering analysis based on HLA-II expression in CCOs revealed a subgroup of patients, in whom cancer cells exhibited Intrinsically Immunogenic Properties (Ca-IIP), and were characterized by high expression of signatures associated with HLA-I, HLA-II, antigen presentation, and immune stimulation. Patients with the Ca-IIP phenotype had an excellent prognosis, irrespective of age, disease stage, intrinsic molecular type, or TIM status. Ca-IIP was negatively correlated with intrinsic E2F/MYC signaling. Analysis of the correlation between CCO immuno-genotype and TIM phenotype revealed that the TIM phenotype was associated with microsatellite instability, Wnt/β-catenin signaling, APC/KRAS mutations, and the unfolded protein response pathway linked to the FBXW7 mutation in cancer cells. However, Ca-IIP was not associated with the TIM phenotype. Conclusions We identified a Ca-IIP phenotype from a large set of CCOs. Our findings may provide an unprecedented opportunity to develop new strategies for optimal patient stratification in this era of immunotherapy.
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- 2021
6. Development of a novel nannochloropsis strain with enhanced violaxanthin yield for large‐scale production
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Ae Jin Ryu, Dae-Hyun Cho, Joohyun Yun, Jin-Ho Yun, Sujin Lee, Su-Bin Park, Saehae Choi, Dong Yun Choi, Ji Won Kim, Hee-Sik Kim, and Yong Jae Lee
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0106 biological sciences ,Mutant ,lcsh:QR1-502 ,Bioengineering ,Gamma‐ray irradiation ,Xanthophylls ,01 natural sciences ,Applied Microbiology and Biotechnology ,lcsh:Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,Pigment ,Bioreactor ,Microalgae ,Food science ,Biomass ,Carotenoid ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,biology ,Strain (chemistry) ,Random mutagenesis ,Research ,biology.organism_classification ,chemistry ,Yield (chemistry) ,visual_art ,Mutation ,visual_art.visual_art_medium ,Nannochloropsis oceanica ,Violaxanthin ,Transcriptome ,Nannochloropsis ,Stramenopiles ,010606 plant biology & botany ,Biotechnology - Abstract
Background Nannochloropsis is a marine microalga that has been extensively studied. The major carotenoid produced by this group of microalgae is violaxanthin, which exhibits anti-inflammatory, anti-photoaging, and antiproliferative activities. Therefore, it has a wide range of potential applications. However, large-scale production of this pigment has not been much studied, thereby limiting its industrial application. Results To develop a novel strain producing high amount of violaxanthin, various Nannochloropsis species were isolated from seawater samples and their violaxanthin production potential were compared. Of the strains tested, N. oceanica WS-1 exhibited the highest violaxanthin productivity; to further enhance the violaxanthin yield of WS-1, we performed gamma-ray-mediated random mutagenesis followed by colorimetric screening. As a result, Mutant M1 was selected because of its significant higher violaxanthin content and biomass productivity than WS-1 (5.21 ± 0.33 mg g− 1 and 0.2101 g L− 1 d− 1, respectively). Subsequently, we employed a 10 L-scale bioreactor to confirm the large-scale production potential of M1, and the results indicated a 43.54 % increase in violaxanthin production compared with WS-1. In addition, comparative transcriptomic analysis performed under normal light condition identified possible mechanisms associated with remediating photo-inhibitory damage and other key responses in M1, which seemed to at least partially explain enhanced violaxanthin content and delayed growth. Conclusions Nannochloropsis oceanica mutant (M1) with enhanced violaxanthin content was developed and its physiological characteristics were investigated. In addition, enhanced production of violaxanthin was demonstrated in the large-scale cultivation. Key transcriptomic responses that are seemingly associated with different physiological responses of M1 were elucidated under normal light condition, the details of which would guide ongoing efforts to further maximize the industrial potential of violaxanthin producing strains.
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- 2021
7. Post-COVID-19 encephalomyelitis
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Ji-Won Kim, Janina Neuneier, Helmar C. Lehmann, Nuran Abdullayev, and Gereon R. Fink
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Pathology ,medicine.medical_specialty ,Neuromyelitis optica ,business.industry ,Encephalomyelitis ,Myelitis ,Splenium ,Autoimmunity ,medicine.disease ,Corpus callosum ,lcsh:RC346-429 ,lcsh:RC321-571 ,Acute Transverse Myelitis ,Sensory ataxia ,Postinfectious ,medicine ,ddc:610 ,medicine.symptom ,Immunoadsorption ,business ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Letter to the Editor ,lcsh:Neurology. Diseases of the nervous system - Abstract
Since the outbreak of coronavirus disease 2019 (COVID-19), a growing number of cases of acute transverse myelitis associated with COVID-19 have been reported. Here, we present the case of a patient who developed sensory ataxia after COVID-19 with MR lesions suggestive for longitudinal myelitis and in the splenium of the corpus callosum. The patient was successfully treated with immunoadsorption.
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- 2021
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8. Association between triglyceride glucose index and obstructive sleep apnea risk in Korean adults: a cross-sectional cohort study
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Hyeon Hui Kang, Sei Won Kim, and Sang Haak Lee
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Adult ,Blood Glucose ,Male ,medicine.medical_specialty ,Triglyceride glucose index ,Endocrinology, Diabetes and Metabolism ,Oxygen saturation ,Clinical Biochemistry ,030209 endocrinology & metabolism ,030204 cardiovascular system & hematology ,Logistic regression ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Insulin resistance ,Asian People ,Risk Factors ,Internal medicine ,medicine ,Prevalence ,Humans ,Obesity ,lcsh:RC620-627 ,Triglycerides ,Retrospective Studies ,Sleep Apnea, Obstructive ,business.industry ,Research ,Biochemistry (medical) ,Area under the curve ,Odds ratio ,Middle Aged ,medicine.disease ,Obstructive sleep apnea ,Confidence interval ,respiratory tract diseases ,lcsh:Nutritional diseases. Deficiency diseases ,Apnea-hypopnea index ,Cross-Sectional Studies ,Logistic Models ,Apnea–hypopnea index ,ROC Curve ,Female ,business - Abstract
Background Triglyceride glucose (TyG) index is a reliable marker of insulin resistance, which is linked to obstructive sleep apnea (OSA). However, the relationship between TyG index and OSA has not been adequately assessed. This study aimed to evaluate the association between TyG index and OSA. Methods TyG index was assessed in 180 (mean age: 48.6 ± 13.8 years; 73.9% male) consecutive Korean adults with suspected OSA admitted to the sleep clinic at St. Paul’s Hospital between 2010 and 2012. The occurrence of more than 5 apnea-hypopnea index (AHI) events/h was used to define OSA. TyG index was calculated using the following equation: In [fasting triglycerides (mg/dL) × fasting glucose (mg/dL)/2]. All participants were grouped according to TyG index tertiles. Multivariate logistic regression analysis was used to determine factors associated with increased OSA risk. Results The overall prevalence of OSA in study participants was determined to be 83.9%. The prevalence of OSA increased (I [lowest]: 71.6%; II: 88.7%; III [highest]: 91.4%), and lowest peripheral oxygen saturation (SpO2) levels decreased (I: 83.3 ± 8.5%; II: 79.9 ± 8.7%; III: 79.0 ± 8.3%), as TyG index tertile increased (P
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- 2020
9. LOX family and ZFPM2 as novel diagnostic biomarkers for malignant pleural mesothelioma
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Mirae Jang, Yangsik Jeong, Suk-Joong Yong, Hyun-Won Kim, Sung Soo Oh, Minkyu Kim, Soon-Hee Jung, and Jong-Whan Choi
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0301 basic medicine ,ZFPM2 ,Clinical Biochemistry ,Malignant pleural mesothelioma ,Lysyl oxidase ,03 medical and health sciences ,0302 clinical medicine ,SULF1 ,Medicine ,Diagnostic biomarker ,Mesothelin ,Zinc finger ,LOXL2 ,biology ,business.industry ,Cadherin ,Research ,lcsh:RM1-950 ,Biochemistry (medical) ,LOX ,lcsh:Therapeutics. Pharmacology ,030104 developmental biology ,Real-time polymerase chain reaction ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,Molecular Medicine ,business - Abstract
BackgroundMalignant pleural mesothelioma (MPM) is a rare and aggressive cancer that develops in the pleural and outer layer of tissues surrounding the lungs. MPM is primarily caused by occupational exposure to asbestos and results in a poor prognosis. Effective therapeutics as well as early diagnostics for the MPM are still lacking. To identify potential diagnostic biomarkers for MPM, we performed bioinformatics analysis of public database.MethodsUtilizing databases from Cancer Cell Line Encyclopedia (CCLE) and Gene Expression Omnibus (GEO), we identified several potential candidates that could act as MPM biomarkers. We carried out additional molecular analyses of these potential markers using MPM patient tissue samples via quantitative polymerase chain reaction.ResultsWe identified Lysyl oxidase (LOX), Lysyl oxidase homologs 1&2 (LOXL1& LOXL2) Zinc Finger Protein, FOG Family Member 2 (ZFPM2) as potential diagnostic biomarkers for MPM. In this study, we found that the LOX family and ZFPM2 showed comparable diagnostic ability to Fibulin-3 or mesothelin (MSLN) and would be better potential biomarkers than Sulfatase 1 (SULF1), Thrombospondin 2 (THBS2) and Cadherin 11 (CDH11).ConclusionsLOX family and ZPFM2 were identified as novel MPM diagnostic biomarkers which could strengthen MPM clinical diagnostic capabilities.
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- 2020
10. Metformin improves salivary gland inflammation and hypofunction in murine Sjögren’s syndrome
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Sun-Hee Hwang, Mi-La Cho, KyungAh Jung, Jin-Sil Park, JeongWon Choi, Seon-Yeong Lee, Sung-Hwan Park, Seung-Ki Kwok, Sung-Min Kim, Jun-Geol Ryu, and Ji-Won Kim
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medicine.medical_specialty ,lcsh:Diseases of the musculoskeletal system ,endocrine system diseases ,Regulatory T cell ,Administration, Oral ,Inflammation ,T-Lymphocytes, Regulatory ,Salivary Glands ,Sialadenitis ,STAT3 ,B-lymphocyte ,Mice ,Mice, Inbred NOD ,Internal medicine ,TOR serine-threonine kinase ,medicine ,Animals ,Hypoglycemic Agents ,Th17 cells ,B cell ,B-Lymphocytes ,Microscopy, Confocal ,Salivary gland ,AMP-activated protein kinase ,business.industry ,Interleukin ,Germinal center ,Cell Differentiation ,Flow Cytometry ,Immunohistochemistry ,Metformin ,Immunity, Innate ,Disease Models, Animal ,Endocrinology ,medicine.anatomical_structure ,Sjogren's Syndrome ,Sjögren’s syndrome ,Cytokines ,Tumor necrosis factor alpha ,Female ,lcsh:RC925-935 ,medicine.symptom ,business ,medicine.drug ,Research Article - Abstract
Background Activated T and B cells participate in the development and progression of Sjögren’s syndrome (SS). Metformin, a first-line anti-diabetic drug, exerts anti-inflammatory and immunomodulatory effects by activating AMPK. We investigated the therapeutic effect of metformin in non-obese diabetic (NOD)/ShiLtJ mice, an animal model of SS. Methods Metformin or vehicle was administered orally to the mice for 9 weeks. The salivary flow rate was measured at 11, 13, 15, 17, and 20 weeks. Histological analysis of the salivary glands from vehicle- and metformin-treated mice was conducted. CD4+ T and B cell differentiation in the peripheral blood and/or spleen was determined by flow cytometry. Serum total IgG, IgG1, and IgG2a levels were determined by enzyme-linked immunosorbent assay. Results Metformin reduced salivary gland inflammation and restored the salivary flow rate. Moreover, metformin reduced the interleukin (IL)-6, tumor necrosis factor-α, IL-17 mRNA, and protein levels in the salivary glands. Metformin reduced the Th17 and Th1 cell populations and increased the regulatory T cell population in the peripheral blood and spleen and modulated the balance between Tfh and follicular regulatory T cells. In addition, metformin reduced B cell differentiation into germinal center B cells, decreased the serum immunoglobulin G level, and maintained the balance between IL-10- and IL-17-producing B cells. Conclusion Metformin suppresses effector T cells, induces regulatory T cells, and regulates B cell differentiation in an animal model of SS. In addition, metformin ameliorates salivary gland inflammation and hypofunction, suggesting that it has potential for the treatment of SS. Electronic supplementary material The online version of this article (10.1186/s13075-019-1904-0) contains supplementary material, which is available to authorized users.
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- 2019
11. Is there an association between vitamin D deficiency and adenotonsillar hypertrophy in children with sleep-disordered breathing?
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Soo Whan Kim, Byung Guk Kim, Boo-Young Kim, Ji-Hyeon Shin, Hojong Kim, and Sung Won Kim
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Male ,medicine.medical_specialty ,Palatine Tonsil ,Adenoid ,Gastroenterology ,vitamin D deficiency ,Body Mass Index ,03 medical and health sciences ,0302 clinical medicine ,Sleep Apnea Syndromes ,Internal medicine ,medicine ,Vitamin D and neurology ,otorhinolaryngologic diseases ,Hypersensitivity ,Humans ,030212 general & internal medicine ,Adenotonsillar hypertrophy ,Vitamin D ,Sleep-disordered breathing ,Child ,Sensitization ,Retrospective Studies ,business.industry ,lcsh:RJ1-570 ,Age Factors ,lcsh:Pediatrics ,Hypertrophy ,Organ Size ,respiratory system ,medicine.disease ,Tonsils ,Vitamin D Deficiency ,stomatognathic diseases ,medicine.anatomical_structure ,Cross-Sectional Studies ,Tonsil ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Adenoids ,Sleep disordered breathing ,Female ,business ,Body mass index ,030217 neurology & neurosurgery ,Research Article - Abstract
Background Low vitamin D levels have been linked to the risk of sleep-disordered breathing (SDB) in children. Although adenotonsillar hypertrophy (ATH) is the major contributor to childhood SDB, the relationship between ATH and serum vitamin D is uncertain. We therefore investigated the relationship between vitamin D levels and associated factors in children with ATH. Methods We reviewed data from all children with SDB symptoms who were treated from December 2013 to February 2014. Of these, 88 children whose serum vitamin D levels were measured were enrolled in the study. We divided the children into four groups based on adenoidal and/or tonsillar hypertrophy. We conducted a retrospective chart review to analyze demographic data, the sizes of tonsils and adenoids, serum 25-hydroxy-vitamin D [25(OH)D] level, body mass index (BMI), and allergen sensitization patterns. Results Children in the ATH group had a lower mean 25(OH)D level than did those in the control group (p
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- 2018
12. Global DNA methylation changes spanning puberty are near predicted estrogen-responsive genes and enriched for genes involved in endocrine and immune processes
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Kyung Won Kim, Robert F. Lemanske, Carole Ober, James E. Gern, Daniel J. Jackson, Emma E. Thompson, and Jessie Nicodemus-Johnson
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0301 basic medicine ,Male ,medicine.medical_specialty ,lcsh:QH426-470 ,Adolescent ,medicine.drug_class ,lcsh:Medicine ,Endocrine System ,Biology ,Androgen ,Epigenesis, Genetic ,03 medical and health sciences ,Internal medicine ,Gene expression ,Genetics ,medicine ,Humans ,Gene Regulatory Networks ,Epigenetics ,Differential methylation ,Immune response ,Child ,Molecular Biology ,Gene ,Genetics (clinical) ,Oligonucleotide Array Sequence Analysis ,Sex Characteristics ,Research ,lcsh:R ,Puberty ,Immunity ,Estrogens ,DNA Methylation ,Estrogen ,Androgen receptor ,lcsh:Genetics ,030104 developmental biology ,Endocrinology ,Gene Expression Regulation ,DNA methylation ,Leukocytes, Mononuclear ,Female ,Developmental Biology ,Hormone ,Genome-Wide Association Study - Abstract
Background The changes that occur during puberty have been implicated in susceptibility to a wide range of diseases later in life, many of which are characterized by sex-specific differences in prevalence. Both genetic and environmental factors have been associated with the onset or delay of puberty, and recent evidence has suggested a role for epigenetic changes in the initiation of puberty as well. Objective To identify global DNA methylation changes that arise across the window of puberty in girls and boys. Methods Genome-wide DNA methylation levels were measured using the Infinium 450K array. We focused our studies on peripheral blood mononuclear cells (PBMCs) from 30 girls and 25 boys pre- and post-puberty (8 and 14 years, respectively), in whom puberty status was confirmed by Tanner staging. Results Our study revealed 347 differentially methylated probes (DMPs) in females and 50 DMPs in males between the ages of 8 and 14 years (FDR 5%). The female DMPs were in or near 312 unique genes, which were over-represented for having high affinity estrogen response elements (permutation P
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- 2018
13. Clinical implications of the BRAF mutation in papillary thyroid carcinoma and chronic lymphocytic thyroiditis
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Woon Won Kim, Tae Kwun Ha, and Sung Kwon Bae
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Male ,Multivariate analysis ,endocrine system diseases ,Gastroenterology ,Cohort Studies ,0302 clinical medicine ,Chronic lymphocytic thyroiditis ,030212 general & internal medicine ,Original Research Article ,Thyroid cancer ,Total thyroidectomy ,Incidence (epidemiology) ,Incidence ,Biopsy, Needle ,Middle Aged ,Prognosis ,Immunohistochemistry ,Treatment Outcome ,Thyroid Cancer, Papillary ,030220 oncology & carcinogenesis ,Mutation (genetic algorithm) ,Thyroidectomy ,Female ,Adult ,Proto-Oncogene Proteins B-raf ,medicine.medical_specialty ,lcsh:Surgery ,Hashimoto Disease ,Risk Assessment ,Thyroid carcinoma ,03 medical and health sciences ,Internal medicine ,medicine ,Humans ,Genetic Predisposition to Disease ,Thyroid Neoplasms ,Aged ,Retrospective Studies ,business.industry ,Significant difference ,lcsh:RD1-811 ,medicine.disease ,Carcinoma, Papillary ,BRAF mutation ,Otorhinolaryngology ,Papillary thyroid carcinoma ,Mutation ,Surgery ,business ,Lymphocytic Thyroiditis - Abstract
Background The purpose of this study was to examine the possible prognostics and clinicopathologic characteristics underlying the BRAFV600E mutation and papillary thyroid carcinoma (PTC) coexisting or in absence of chronic lymphocytic thyroiditis (CLT). Methods This study was conducted on 172 patients who had undergone total thyroidectomy or unilateral total thyroidectomy for PTC; the patients were then examined for the BRAFV600E mutation using specimens obtained after their surgery from January 2013 to August 2015. Results BRAF mutations were found in 130 of 172 patients (75.6%). CLT was present in 27.9% of patients (48/172). The incidence of the BRAFV600E mutation was significantly increased in the group with no CLT (P = 0.001). The findings of the multivariate analysis pertaining to the coexistence of CLT and PTC showed no significant correlation other than the BRAFV600E mutation. No significant difference was noted in the clinicopathologic factors between the two groups based on the coexistence of CLT in univariate and multivariate analyses. Conclusions The BRAFV600E mutation is less frequent in PTC coexisting with CLT presumably because CLT and the BRAFV600E mutation operate independently in the formation and progression of thyroid cancer.
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- 2018
14. Does chemotherapy or radiotherapy affect the postoperative complication in breast cancer patients who underwent immediate breast reconstruction with tissue expander?
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Sung Mi Jung, Byung-Joon Jeon, Jinsun Woo, Jai Min Ryu, Se Kyung Lee, Byung-Joo Chae, Jonghan Yu, Seok Won Kim, Seok Jin Nam, Jai-Kyong Pyon, Goo-Hyun Mun, Sa Ik Bang, Jeong Eon Lee, Jung, Sung Mi, Jeon, Byung-Joon, Woo, Jinsun, Ryu, Jai Min, Lee, Se Kyung, Chae, Byung-Joo, and Yu, Jonghan
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SURGICAL complications ,MAMMAPLASTY ,PREOPERATIVE risk factors ,CANCER patients ,BREAST cancer ,INTRAOPERATIVE radiotherapy ,RETROSPECTIVE studies ,PROGNOSIS ,MASTECTOMY ,RADIOTHERAPY ,COMBINED modality therapy ,TISSUE expansion ,BREAST tumors ,LONGITUDINAL method - Abstract
Background: Immediate breast reconstruction with tissue expander in breast cancer patients who were expected to receive adjuvant therapy, such as chemotherapy or radiotherapy, has been a topic of debate. Postoperative complications from tissue expander procedures can delay the timing of adjuvant treatment and subsequently increase the probability of recurrence. The purpose of this study was to identify the impact of chemotherapy and radiotherapy on postoperative complications in patients who underwent immediate reconstruction (IR) using tissue expander.Methods: We conducted a retrospective study of 1081 breast cancer patients who underwent mastectomy and IR using tissue expander insertion between 2012 and 2017 in Samsung Medical Center. The patients were divided into two groups based on complications (complication group vs. no complication group). Complication group was regarded to have surgical removal or conservative treatment based on clinical findings such as infection, capsular contracture, seroma, hematoma, rupture, malposition, tissue viability, or cosmetic problem. The complication group had 59 patients (5.5%) and the no complication group had 1022 patients (94.5%).Results: In univariate analysis, adjuvant radiotherapy and adjuvant chemotherapy were significantly associated with postoperative complications. In multivariate analysis, however, only higher pathologic N stage was significantly associated with postoperative complications (p < 0.001). Chemotherapy (p = 0.775) or radiotherapy (p = 0.825) were not risk factors for postoperative complications.Conclusions: IR with tissue expander after mastectomy may be a treatment option even when the patients are expected to receive adjuvant chemotherapy or radiotherapy. These results will aid patients who are concerned about the complications of IR caused by chemotherapy or radiotherapy determine whether or not to have IR.Trial Registration: Patients were selected and registered retrospectively, and medical records were evaluated. [ABSTRACT FROM AUTHOR]- Published
- 2021
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15. Comparative genomic analysis and characteristics of NCCP15740, the major type of enterotoxigenic Escherichia coli in Korea
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Seung-Hak Cho, Cheorl-Ho Kim, Su-Jin Jung, Won Kim, Taesoo Kwon, Younghee Jung, Si-yun Chung, Young-Seok Bak, Je-Seop Park, and Sang-Gyun Roh
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0301 basic medicine ,Serotype ,030106 microbiology ,Multilocus sequence typing ,Virulence ,Enterotoxin ,Biology ,medicine.disease_cause ,Microbiology ,03 medical and health sciences ,Virology ,Enterotoxigenic Escherichia coli ,medicine ,ORFS ,lcsh:RC799-869 ,Colonization factor genes ,Gene ,Whole genome sequencing ,Whole-genome sequencing ,Gastroenterology ,Enterotoxigenic Escherichia coli O6 ,Genome Report ,030104 developmental biology ,Infectious Diseases ,Parasitology ,lcsh:Diseases of the digestive system. Gastroenterology - Abstract
Background Enterotoxigenic Escherichia coli (ETEC) cause infectious diarrhea and diarrheal death. However, the genetic properties of pathogenic strains vary spatially and temporally, making prevention and treatment difficult. In this study, the genomic features of the major type of ETEC in Korea from 2003 to 2011 were examined by whole-genome sequencing of strain NCCP15740, and a comparative genomic analysis was performed with O6 reference strains. Results The assembled genome size of NCCP15740 was 4,795,873 bp with 50.54% G+C content. Using rapid annotation using subsystem technology analysis, we predicted 4492 ORFs and 17 RNA genes. NCCP15740 was investigated for enterotoxin genes, colonization factor (CF) genes, serotype, multilocus sequence typing (MLST) profiles, and classical and nonclassical virulence factors. NCCP15740 belonged to the O6:H16 serotype and possessed enterotoxin genes encoding heat-stable toxin (STh) and heat-labile toxin (LT); 87.5% of the O6 serotype strains possessed both toxin types. NCCP15740 carried the colonization factors CS2 and CS3, whereas most O6 strains carried CS2-CS3-CS21 (79.2%). NCCP15740 harbored fewer virulence factors (59.4%) than the average observed in other O6 strains (62.0%). Interestingly, NCCP15740 did not harbor any nonclassical virulence genes. Conclusions The major type of ETEC in Korea had the same MLST sequence type as that of isolates from the USA obtained in 2011 and 2014, but had different colonization factor types and virulence profiles. These results provide important information for the development of an ETEC vaccine candidate. Electronic supplementary material The online version of this article (doi:10.1186/s13099-017-0204-y) contains supplementary material, which is available to authorized users.
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- 2017
16. Factors affecting survival after concurrent chemoradiation therapy for advanced hepatocellular carcinoma: a retrospective study
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Ja Kyung Kim, Jun Won Kim, Seung-Moon Joo, Kwan Sik Lee, Eun-Suk Cho, Yonsoo Kim, Jeong-Sik Yu, Ik Jae Lee, Kwang Hun Lee, Jung Il Lee, and Tae Joo Jeon
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lcsh:Medical physics. Medical radiology. Nuclear medicine ,Oncology ,Adult ,Male ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Hepatocellular carcinoma ,lcsh:R895-920 ,medicine.medical_treatment ,Kaplan-Meier Estimate ,lcsh:RC254-282 ,Disease-Free Survival ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Progression-free survival ,Chemoembolization, Therapeutic ,Prospective cohort study ,Aged ,Proportional Hazards Models ,Retrospective Studies ,Radiotherapy ,business.industry ,Research ,Hazard ratio ,Liver Neoplasms ,Hepatitis C ,Chemoradiotherapy ,Middle Aged ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,medicine.disease ,Portal vein thrombosis ,Radiation therapy ,Treatment Outcome ,030220 oncology & carcinogenesis ,030211 gastroenterology & hepatology ,Chemoembolization ,Female ,business - Abstract
Background Concurrent chemoradiation therapy (CCRT) followed by hepatic arterial infusional chemotherapy (HAIC) was reported to be effective for advanced hepatocellular carcinoma (HCC) with portal vein thrombosis. However, transarterial chemoembolization (TACE) is not preferred in this setting. The aim of this study was to assess the factors affecting survival after CCRT, including additional TACE during repeated HAIC. Methods Thirty-eight patients who underwent CCRT as the initial treatment for Barcelona Clinic Liver Cancer stage C HCC with vascular invasion between 2009 and 2016 were reviewed retrospectively. During CCRT, 5-fluorouracil (5-FU) was infused via chemoport during the first and last five days of five weeks of external beam radiation therapy. After CCRT, repeated HAIC with cisplatin and 5-FU was performed monthly. Nineteen patients (50%) underwent additional TACE between repeated HAICs. Factors related to overall survival and progression free survival (PFS) were analyzed. Results The mean age of patients was 55 years (male:female, 33:5). Underlying liver diseases were hepatitis B, hepatitis C and non-B/C in 29, 1 and 8 patients, respectively. The median radiation dose was 4500 cGy. The objective response (OR) rate at one months after CCRT was 36.8%. The median PFS was 7.4 (range, 1.8 − 32.1) months. The median overall survival was 11.6 (range 2.8-65.7) months. Achieving an OR after CCRT (hazard ratio [HR], 0.028; P
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- 2017
17. Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea
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Won Kim, Seung-Hak Cho, and Taesoo Kwon
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0301 basic medicine ,Shiga-like toxin-producing Escherichia coli O157 ,030106 microbiology ,Virulence ,Biology ,medicine.disease_cause ,Microbiology ,Genome ,DNA sequencing ,03 medical and health sciences ,Plasmid ,Virology ,medicine ,Gene ,Escherichia coli ,Prophage ,Comparative genomics ,Gastroenterology ,Non-Shiga-like toxin-producing Escherichia coli O157 ,Genome Report ,Alpha-hemolysin ,030104 developmental biology ,Infectious Diseases ,Draft genome ,Parasitology - Abstract
Background The Shiga toxin-producing Escherichia coli (STEC) O157 strain NCCP15739 and non-STEC O157 strain NCCP15738 were isolated from outbreaks in Korea. We characterized NCCP15739 and NCCP15738 by genome sequencing and a comparative genomic analysis using two additional strains, E. coli K-12 substr. MG1655 and O157:H7 EDL933. Results Using the Illumina HiSeq 2000 platform and the RAST server, the whole genomes of NCCP15739 and NCCP15738 were obtained and annotated. NCCP15739 and NCCP15738 clustered with different E. coli strains based on a whole-genome phylogeny and multi-locus sequence typing analysis. Functional annotation clustering indicated enrichment for virulence plasmid and hemolysis-related genes in NCCP15739 and conjugation- and flagellum-related genes in NCCP15738. Defense mechanism- and pathogenicity-related pathways were enriched in NCCP15739 and pathways related to the assimilation of energy sources were enriched in NCCP15738. We identified 66 and 18 virulence factors from the NCCP15739 and NCCP15738 genome, respectively. Five and eight antibiotic resistance genes were identified in the NCCP15739 and NCCP15738 genomes, respectively. Based on a comparative analysis of phage-associated regions, NCCP15739 and NCCP15738 had specific prophages. The prophages in NCCP15739 carried virulence factors, but those in NCCP15738 did not, and no antibiotic resistance genes were found in the phage-associated regions. Conclusions Our whole-genome sequencing and comparative genomic analysis revealed that NCCP15739 and NCCP15738 have specific genes and pathways. NCCP15739 had more genes (410), virulence factors (48), and phage-related regions (11) than NCCP15738. However, NCCP15738 had three more antibiotic resistance genes than NCCP15739. These differences may explain differences in pathogenicity and biological characteristics. Electronic supplementary material The online version of this article (doi:10.1186/s13099-017-0156-2) contains supplementary material, which is available to authorized users.
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- 2017
18. Tat-HSP22 inhibits oxidative stress-induced hippocampal neuronal cell death by regulation of the mitochondrial pathway
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Duk Soo Kim, Jinseu Park, Eun Ji Yeo, Eun Jeong Sohn, Chi Hern Lee, Dae Won Kim, Min Jea Shin, Su Bin Cho, Won Sik Eum, Yeon Hee Yu, Soo Young Choi, Ora Son, Yeon Joo Choi, Hyo Sang Jo, Keun Wook Lee, Jung Hwan Park, Hyeon Ji Yeo, and Sung-Woo Cho
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0301 basic medicine ,Male ,Programmed cell death ,Tat-HSP22 ,Cell Membrane Permeability ,DNA damage ,Recombinant Fusion Proteins ,Apoptosis ,Protein therapy ,Oxidative phosphorylation ,Biology ,Hippocampal formation ,Protein Serine-Threonine Kinases ,medicine.disease_cause ,Hippocampus ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Ischemia ,Transduction, Genetic ,Heat shock protein ,medicine ,Animals ,Molecular Biology ,Heat-Shock Proteins ,Membrane Potential, Mitochondrial ,Neurons ,030102 biochemistry & molecular biology ,Cell Death ,Cytochrome c ,Research ,Hydrogen Peroxide ,HSP22 ,Oxidative stress ,Cell biology ,Mitochondria ,Oxidative Stress ,030104 developmental biology ,Neuroprotective Agents ,Gene Products, tat ,biology.protein ,Gerbillinae ,Molecular Chaperones ,Signal Transduction - Abstract
Oxidative stress plays an important role in the progression of various neuronal diseases including ischemia. Heat shock protein 22 (HSP22) is known to protect cells against oxidative stress. However, the protective effects and mechanisms of HSP22 in hippocampal neuronal cells under oxidative stress remain unknown. In this study, we determined whether HSP22 protects against hydrogen peroxide (H2O2)-induced oxidative stress in HT-22 using Tat-HSP22 fusion protein. We found that Tat-HSP22 transduced into HT-22 cells and that H2O2-induced cell death, oxidative stress, and DNA damage were significantly reduced by Tat-HSP22. In addition, Tat-HSP22 markedly inhibited H2O2-induced mitochondrial membrane potential, cytochrome c release, cleaved caspase-3, and Bax expression levels, while Bcl-2 expression levels were increased in HT-22 cells. Further, we showed that Tat-HSP22 transduced into animal brain and inhibited cleaved-caspase-3 expression levels as well as significantly inhibited hippocampal neuronal cell death in the CA1 region of animals in the ischemic animal model. In the present study, we demonstrated that transduced Tat-HSP22 attenuates oxidative stress-induced hippocampal neuronal cell death through the mitochondrial signaling pathway and plays a crucial role in inhibiting neuronal cell death, suggesting that Tat-HSP22 protein may be used to prevent oxidative stress-related brain diseases including ischemia.
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- 2017
19. PHKA2 mutation spectrum in Korean patients with glycogen storage disease type IX: prevalence of deletion mutations
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Hyung Doo Park, Yon Ho Choe, Rihwa Choi, Ben Kang, Jong-Won Kim, Soo-Youn Lee, So Yoon Choi, Junghan Song, and Chang-Seok Ki
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0301 basic medicine ,Glycogen Storage Disease Type IX ,Male ,medicine.medical_specialty ,Sequence analysis ,Phosphorylase Kinase ,Molecular Sequence Data ,Aspartate transaminase ,Korean ,medicine.disease_cause ,PHKA2 ,Inherited metabolic diseases ,Glycogen storage disease ,Hepatomegaly ,03 medical and health sciences ,Exon ,0302 clinical medicine ,Asian People ,Republic of Korea ,Genetics ,medicine ,Humans ,Genetics(clinical) ,Amino Acid Sequence ,Aspartate Aminotransferases ,Child ,Genetics (clinical) ,Sequence Deletion ,Mutation ,biology ,Cytogenetics ,Alanine Transaminase ,Exons ,Sequence Analysis, DNA ,medicine.disease ,030104 developmental biology ,Alanine transaminase ,Case-Control Studies ,Child, Preschool ,biology.protein ,030217 neurology & neurosurgery ,Research Article - Abstract
Background: Molecular diagnosis of glycogen storage diseases (GSDs) is important to enable accurate diagnoses and make appropriate therapeutic plans. The aim of this study was to evaluate the PHKA2 mutation spectrum in Korean patients with GSD type IX. Methods: Thirteen Korean patients were tested for PHKA2 mutations using direct sequencing and a multiplex polymerase chain reaction method. A comprehensive review of the literature on previously reported PHKA2 mutations in other ethnic populations was conducted for comparison. Results: Among 13 patients tested, six unrelated male patients with GSD IX aged 2 to 6 years at the first diagnostic work-up for hepatomegaly with elevated aspartate transaminase (AST) and alanine transaminase (ALT) were found to have PHKA2 mutations. These patients had different PHKA2 mutations: five were known mutations (c.537 + 5G > A, c.884G > A [p.Arg295His], c.3210_3212delGAG [p.Arg1072del], exon 8 deletion, and exons 27-33 deletion) and one was a novel mutation (exons 18-33 deletion). Notably, the most common type of mutation was gross deletion, in contrast to other ethnic populations in which the most common mutation type was sequence variant. Conclusions: This study expands our knowledge of the PHKA2 mutation spectrum of GSD IX. Considering the PHKA2 mutation spectrum in Korean patients with GSD IX, molecular diagnostic methods for deletions should be conducted in conjunction with direct sequence analysis to enable accurate molecular diagnosis of this disease in the Korean population.
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- 2016
20. Impact of uncontrolled hypertension on 12-month clinical outcomes following below-the-knee arteries (BTK) interventions in patients with critical limb ischemia
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Chang Gyu Park, Hong Seog Seo, Eung Ju Kim, Jae Joong Lee, Jin Won Kim, Cheol Ung Choi, Ji Bak Kim, Sung Il Im, Hong Euy Lim, Se Yeon Choi, Byoung Geol Choi, Seung-Woon Rha, Sun Ki Lee, Dong Joo Oh, and Jin Oh Na
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medicine.medical_specialty ,business.industry ,medicine.medical_treatment ,Research ,Uncontrolled hypertension ,Diastole ,Critical limb ischemia ,Revascularization ,Peripheral angioplasty ,Surgery ,Blood pressure ,Amputation ,Internal medicine ,Below-the-knee artery (BTK) lesion ,Internal Medicine ,medicine ,Cardiology ,Clinical significance ,cardiovascular diseases ,medicine.symptom ,Risk factor ,Cardiology and Cardiovascular Medicine ,business ,Angiology - Abstract
Background Despite intensive anti-hypertensive treatment, overall control rates of only 30 ~ 50 % have been reported in patients with hypertension (HTN). However, clinical significance and angiographic characteristics of patients with uncontrolled HTN following Below-the-knee arteries (BTK) interventions in patients with critical limb ischemia (CLI) are not clarified yet as compared to those with controlled HTN. Methods A total 165 consecutive hypertensive patients with BTK lesions from August 2004 to November 2012 were enrolled for this study. Uncontrolled HTN was defined as a blood pressure of > 140 mmHg systolic and 90 mmHg diastolic under anti-hypertensive treatment. A total of 112 patients (67.8 %) had uncontrolled HTN. We compared the clinical and angiographic characteristics of patients with uncontrolled HTN following BTK interventions to those with controlled HTN at 12-month follow-up. Results The baseline characteristics are well balanced between the two groups. At 12 months, there was no difference in the incidence of mortality, target lesion revascularization (TLR), target extremity revascularization (TER), and limb salvage rate in both groups. However, amputation rates were higher in patients with controlled HTN (33.9 vs. 19.6 %, P = 0.045). Conclusion Regardless of blood pressure control, HTN itself was an independent risk factor for BTK lesions, suggesting more intensive medical therapy with close clinical follow up will be required for all BTK patients with HTN.
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- 2016
21. Prognostic value of ERBB4 expression in patients with triple negative breast cancer
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Se Kyung Lee, Young-Hyuck Im, Jin Seok Ahn, Sooyoun Bae, Ji-Yeon Kim, In-Gu Do, Jeong Eon Lee, Yeon Hee Park, Seok Jin Nam, Hae Hyun Jung, and Seok Won Kim
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0301 basic medicine ,Oncology ,Adult ,medicine.medical_specialty ,Cancer Research ,Receptor, ErbB-4 ,Receptor, ErbB-3 ,Receptor, ErbB-2 ,Estrogen receptor ,Triple Negative Breast Neoplasms ,03 medical and health sciences ,0302 clinical medicine ,Breast cancer ,Surgical oncology ,Internal medicine ,Genetics ,Biomarkers, Tumor ,Medicine ,Humans ,ERBB3 ,Triple negative breast cancer ,Epidermal growth factor receptor ,nCounter expression assay ,Survival analysis ,Triple-negative breast cancer ,ERBB4 ,biology ,business.industry ,Gene Expression Profiling ,Estrogen Receptor alpha ,Middle Aged ,medicine.disease ,Prognosis ,Survival Analysis ,ErbB Receptors ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,030220 oncology & carcinogenesis ,biology.protein ,Female ,business ,Research Article - Abstract
Background Triple-negative breast cancer (TNBC) is known for aggressive biologic features and poor prognosis. Epidermal growth factor receptor (EGFR) overexpression in TNBC indicates poor prognosis. However, there is no previous study of the relationship between expression of the entire human epidermal growth factor receptor (HER) family genes and patient prognosis in TNBC. Accordingly, we investigated the expression profiles of HER family genes in patients with TNBC to determine the prognostic value and clinical implications of HER family expression. Methods We used the nCounter expression assay (NanoString®) to measure the expression of EGFR, erb-B2 receptor tyrosine kinase 2 (ERBB2), ERBB3, ERBB4, and estrogen receptor 1 (ESR1) genes using mRNA extracted from paraffin-embedded tumor tissues from 203 patients diagnosed with TNBC. Our data were validated using a separate cohort of 84 TNBC patients. Results A total of 203 TNBC patients who received adjuvant chemotherapy after curative surgery from 2000 to 2004 formed the training set. The 84 TNBC patients in the validation consort were selected from breast cancer patients who received curative surgery since 2005 to 2010. Analysis of the expression profiles of the HER family genes in TNBC tissue specimens revealed that increased expression of ERBB4 was associated with poor prognosis according to survival analysis (5-year distant relapse free survival [5Y DRFS], low vs. high expression [cut-off: median]: 90.1 % vs. 80.2 %; p = 0.022). This trend was also observed in the validation set of TNBC patients (5Y DRFS, low vs. high: 69.4 % vs. 44.7 %; p = 0.053). In a multivariate Cox regression model, ERBB4 expression was identified as a indicator of long-term prognosis in patients with TNBC. Conclusions The expression profile of ERBB4, a member of the HER family, might serve as a prognostic marker in patients with TNBC. Electronic supplementary material The online version of this article (doi:10.1186/s12885-016-2195-3) contains supplementary material, which is available to authorized users.
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- 2016
22. Impact of ranolazine on myocardial metabolic ischemia detected by phosphorus-31 magnetic resonance spectroscopy
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Hooman Madyoon, Gabriel Vorobiof, Norman E. Lepor, Gerald M. Pohost, Jeffrey Helfenstein, Hee-Won Kim, and Laurn Contreras
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medicine.medical_specialty ,Radiological and Ultrasound Technology ,business.industry ,Ischemia ,Ranolazine ,Nuclear magnetic resonance spectroscopy ,medicine.disease ,Internal medicine ,Poster Presentation ,Cardiology ,Medicine ,Radiology, Nuclear Medicine and imaging ,Cardiology and Cardiovascular Medicine ,business ,Angiology ,medicine.drug - Published
- 2016
23. Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43T isolated from fermented seafood
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Young-Do Nam, Jong-Soon Choi, Hae-Won Lee, Myung-Ji Seo, Hye Seon Song, Dong-Gi Lee, Seong Woon Roh, Yong-Joon Cho, Hak Jong Choi, Changmann Yoon, Byung-Yong Kim, Dae Won Kim, Kyung June Yim, Jin Kyu Rhee, and Mi-Hwa Lee
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Genetics ,Whole genome sequencing ,biology ,Trehalose ,Ribosomal RNA ,16S ribosomal RNA ,biology.organism_classification ,Genome ,Halophile ,Short Genome Report ,Extremely halophilic archaea ,Haladaptatus cibarius ,Genome sequence ,Salt-fermented seafood ,Glycine betaine ,Transfer RNA ,Gene ,Archaea - Abstract
An extremely halophilic archaeon, Haladaptatus cibarius D43(T), was isolated from traditional Korean salt-rich fermented seafood. Strain D43(T) shows the highest 16S rRNA gene sequence similarity (98.7 %) with Haladaptatus litoreus RO1-28(T), is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain D43(T). The 3,926,724 bp genome includes 4,092 protein-coding and 57 RNA genes (including 6 rRNA and 49 tRNA genes) with an average G + C content of 57.76 %.
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- 2015
24. Analysis of Mechanical Loading after Anatomic Anterior Cruciate Ligament Reconstruction Using Combined Single-Photon Emission Computerized Tomography and Conventional Computerized Tomography.
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Byung Kag Kim, Tae Won Kim, Chul Ho Hwang, Hong Ki Park, Kyung Hoon Hwang, Jae Ang Sim, Yong Seuk Lee, and Beom Koo Lee
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ANTERIOR cruciate ligament , *SINGLE-photon emission computed tomography , *COMPUTED tomography - Abstract
Purpose: This study was to evaluate changes of the mechanical loading pattern after anatomic anterior cruciate ligament (ACL) reconstruction by analyzing uptake patterns using combined single-photon emission computerized tomography and conventional computerized tomography (SPECT/CT). Materials and Methods: On SPECT/CT, high signal intensity of the articular surface which shows biological activity and mean increase of mechanical loading was compared with that of the tibiofemoral shaft as a comparative signal. The proportion of positive signals was evaluated in all compartments of the operated knee. Analysis was performed according to combined injury. Results: A relatively high proportion of positive signals was detected in the posterior zone of the lateral tibial plateau (23.5%) and trochlear groove (23.5%) although increased signal intensity was detected in all compartments. There was no statistical difference depending on the presence of combined injury and between single-bundle and double-bundle ACL reconstruction. Conclusions: Following anatomic ACL reconstruction, higher signal intensity was detected, particularly in the posterior part of the lateral tibial plateau and trochlear groove. Close observation for further signal changes or osteoarthritic changes would be required even if there was no combined injury and anatomic reconstruction was performed. [ABSTRACT FROM AUTHOR]
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- 2019
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25. The role of the brain-derived neurotrophic factor genotype and parenting in early life in predicting externalizing and internalizing symptoms in children with attention-deficit hyperactivity disorder
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Bung Nyun Kim, Jin Lee, Soo-Churl Cho, Yeon-Kyung Jung, Jae Won Kim, Subin Park, Hee Jeong Yoo, and Min-Sup Shin
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Male ,medicine.medical_specialty ,Neurology ,Adolescent ,Genotype ,Cognitive Neuroscience ,media_common.quotation_subject ,Mothers ,Anxiety ,Polymorphism, Single Nucleotide ,Behavioral Neuroscience ,Neurotrophic factors ,medicine ,Attention deficit hyperactivity disorder ,ADHD ,Humans ,Psychiatry ,Child ,Biological Psychiatry ,Depression (differential diagnoses) ,media_common ,Brain-derived neurotrophic factor ,Psychiatric Status Rating Scales ,Parenting ,Depression ,Research ,Brain-Derived Neurotrophic Factor ,General Medicine ,medicine.disease ,Diagnostic and Statistical Manual of Mental Disorders ,BDNF ,Feeling ,Socioeconomic Factors ,Attention Deficit Disorder with Hyperactivity ,Personal Autonomy ,Educational Status ,Female ,medicine.symptom ,Psychology ,Clinical psychology - Abstract
Background We aimed to determine whether early parenting is associated with externalizing and internalizing symptoms in children with attention-deficit hyperactivity disorder (ADHD) and whether such an association is affected by the brain-derived neurotrophic factor (BDNF) val66met polymorphism. Methods The participants included 92 patients with ADHD aged 6–15 years. Measures of parenting in early life and externalizing and internalizing symptoms and the genotype of the BDNF Val66Met polymorphism were obtained. Results The degree to which the baby’s autonomy was allowed was significantly and negatively correlated with the CDI scores in ADHD children (r = −0.38, p = 0.005). After adjusting for the child’s gender, the child’s age, the family’s gross annual income, and the maternal education level, there was a significant interaction for the BDNF genotype and mother’s positive feelings about caring in relation to the development of childhood anxiety/depression in ADHD children (F = 2.51, p = 0.011). Conclusions Our results provide evidence of an interaction between the BDNF met allele and early parenting on the development of depression/anxiety symptoms.
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- 2014
26. A mutation in Ampd2 is associated with nephrotic syndrome and hypercholesterolemia in mice
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Patrick A Cosgrove, William G. Richards, Chi Ming Li, George A. Carlson, Connie A. Cummings, Mark Chhoa, Tibor Gyuris, Todd Juan, Will Baron, James R. Turk, Murielle M. Véniant, Jim Busby, David Lloyd, Stephen Kaufman, Jeff Lawrence, Ki Won Kim, and Joan Helmering
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medicine.medical_specialty ,Nephrotic Syndrome ,HDL ,Endocrinology, Diabetes and Metabolism ,Mutant ,Clinical Biochemistry ,Hypercholesterolemia ,Kidney Glomerulus ,ENU ,Mutation, Missense ,Gene Expression ,Podocyte foot ,Biology ,medicine.disease_cause ,LDL ,AMP Deaminase ,Endocrinology ,Internal medicine ,medicine ,Animals ,C3 ,Genetic Association Studies ,Biochemistry, medical ,Mutation ,Research ,Biochemistry (medical) ,Cholesterol, HDL ,Wild type ,AMP deaminase ,medicine.disease ,Gene expression profiling ,Mice, Inbred C57BL ,Proteinuria ,LDL receptor ,B6 ,lipids (amino acids, peptides, and proteins) ,Nephrotic syndrome - Abstract
Background Previously, we identified three loci affecting HDL-cholesterol levels in a screen for ENU-induced mutations in mice and discovered two mutated genes. We sought to identify the third mutated gene and further characterize the mouse phenotype. Methods We engaged, DNA sequencing, gene expression profiling, western blotting, lipoprotein characterization, metabolomics assessment, histology and electron microscopy in mouse tissues. Results We identify the third gene as Ampd2, a liver isoform of AMP Deaminase (Ampd), a central component of energy and purine metabolism pathways. The causative mutation was a guanine-to-thymine transversion resulting in an A341S conversion in Ampd2. Ampd2 homozygous mutant mice exhibit a labile hypercholesterolemia phenotype, peaking around 9 weeks of age (251 mg/dL vs. wildtype control at 138 mg/dL), and was evidenced by marked increases in HDL, VLDL and LDL. In an attempt to determine the molecular connection between Ampd2 dysfunction and hypercholesterolemia, we analyzed hepatic gene expression and found the downregulation of Ldlr, Hmgcs and Insig1 and upregulation of Cyp7A1 genes. Metabolomic analysis confirmed an increase in hepatic AMP levels and a decrease in allantoin levels consistent with Ampd2 deficiency, and increases in campesterol and β-sitosterol. Additionally, nephrotic syndrome was observed in the mutant mice, through proteinuria, kidney histology and effacement and blebbing of podocyte foot processes by electron microscopy. Conclusion In summary we describe the discovery of a novel genetic mouse model of combined transient nephrotic syndrome and hypercholesterolemia, resembling the human disorder. Electronic supplementary material The online version of this article (doi:10.1186/1476-511X-13-167) contains supplementary material, which is available to authorized users.
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- 2014
27. Comparative genomic analysis of Klebsiella pneumoniae subsp. pneumoniae KP617 and PittNDM01, NUHL24835, and ATCC BAA-2146 reveals unique evolutionary history of this strain.
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Taesoo Kwon, Young-Hee Jung, Sanghyun Lee, Mi-ran Yun, Won Kim, and Dae-Won Kim
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KLEBSIELLA pneumoniae ,BACTERIAL genomes ,COMPARATIVE genomics ,NUCLEOTIDE sequence ,BACTERIA phylogeny - Abstract
Background: Klebsiella pneumoniae subsp. pneumoniae KP617 is a pathogenic strain that coproduces OXA-232 and NDM-1 carbapenemases. We sequenced the genome of KP617, which was isolated from the wound of a Korean burn patient, and performed a comparative genomic analysis with three additional strains: PittNDM01, NUHL24835 and ATCC BAA-2146. Results: The complete genome of KP617 was obtained via multi-platform whole-genome sequencing. Phylogenetic analysis along with whole genome and multi-locus sequence typing of genes of the Klebsiella pneumoniae species showed that KP617 belongs to the WGLW2 group, which includes PittNDM01 and NUHL24835. Comparison of annotated genes showed that KP617 shares 98.3% of its genes with PittNDM01. Nineteen antibiotic resistance genes were identiied in the KP617 genome: bla
OXA-1 and blaSHV-28 in the chromosome, blaNDM-1 in plasmid 1, and blaOXA-232 in plasmid 2 conferred resistance to beta-lactams; however, colistin- and tetracycline-resistance genes were not found. We identiied 117 virulence factors in the KP617 genome, and discovered that the genes encoding these factors were also harbored by the reference strains; eight genes were lipopolysaccharide-related and four were capsular polysaccharide-related. A comparative analysis of phage-associated regions indicated that two phage regions are speciic to the KP617 genome and that prophages did not act as a vehicle for transfer of antimicrobial resistance genes in this strain. Conclusions: Whole-genome sequencing and bioinformatics analysis revealed similarity in the genome sequences and content, and diferences in phage-related genes, plasmids and antimicrobial resistance genes between KP617 and the references. In order to elucidate the precise role of these factors in the pathogenicity of KP617, further studies are required. [ABSTRACT FROM AUTHOR]- Published
- 2016
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28. Pilot study of intratumoral (IT) cryoablation (cryo) in combination with systemic checkpoint blockade in patients with metastatic melanoma (MM)
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Scott E. Woodman, Isabella C. Glitza, Wen-Jen Hwu, Cassian Yee, Dae Won Kim, Christine N. Spencer, Chantale Bernatchez, Jennifer A. Wargo, Alda L. Tam, Patrick Hwu, James P. Allison, Rodabe N. Amaria, Elizabeth Sirmans, Padmanee Sharma, Michael Davies, Natalie McQuail, Cara Haymaker, Sapna Pradyuman Patel, and Adi Diab
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Cancer Research ,Metastatic melanoma ,viruses ,medicine.medical_treatment ,Immunology ,Ipilimumab ,macromolecular substances ,Bioinformatics ,environment and public health ,Pain palliation ,Immune system ,medicine ,Immunology and Allergy ,In patient ,Pharmacology ,business.industry ,Soft tissue ,Cryoablation ,diagnosis ,Blockade ,Oncology ,Poster Presentation ,Cancer research ,Molecular Medicine ,business ,medicine.drug - Abstract
Meeting abstracts Cryo is an effective modality for pain palliation and local control of soft tissue and bone metastases. Cryo induces necrotic cell death, and combination cryo with anti-CTLA-4 generates potent systemic anti-tumor immune responses in preclinical models and small clinical studies.
- Published
- 2015
29. Primary tumor location predicts poor clinical outcome with cetuximab in RAS wild-type metastatic colorectal cancer.
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Dalyong Kim, Sun Young Kim, Ji Sung Lee, Yong Sang Hong, Jeong Eun Kim, Kyu-pyo Kim, Jihun Kim, Se Jin Jang, Young-Kwang Yoon, Tae Won Kim, Kim, Dalyong, Kim, Sun Young, Lee, Ji Sung, Hong, Yong Sang, Kim, Jeong Eun, Kim, Kyu-Pyo, Kim, Jihun, Jang, Se Jin, Yoon, Young-Kwang, and Kim, Tae Won
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TUMOR diagnosis ,TUMOR treatment ,CETUXIMAB ,RECTAL cancer treatment ,COLON cancer treatment ,PROGRESSION-free survival - Abstract
Background: In metastatic colorectal cancer, the location of the primary tumor has been suggested to have biological significance. In this study, we investigated whether primary tumor location affects cetuximab efficacy in patients with RAS wild-type metastatic colorectal cancer.Methods: Genotyping by the SequenomMassARRAY technology platform (OncoMap) targeting KRAS, NRAS, PIK3CA, and BRAF was performed in tumors from 307 patients who had been given cetuximab as salvage treatment. Tumors with mutated RAS (KRAS or NRAS; n = 127) and those with multiple primary location (n = 10) were excluded. Right colon cancer was defined as a tumor located in the proximal part to splenic flexure.Results: A total of 170 patients were included in the study (right versus left, 23 and 147, respectively). Patients with right colon cancer showed more mutated BRAF (39.1% vs. 5.4%), mutated PIK3CA (13% vs. 1.4%), poorly differentiated tumor (17.4% vs. 3.4%), and peritoneal involvement (26.1% vs. 8.8%) than those with left colon and rectal cancer. Right colon cancer showed poorer progression-free survival (2.0 vs.5.0 months, P = 0.002) and overall survival (4.1 months and 13.0 months, P < 0.001) than the left colon and rectal cancer. By multivariable analysis, BRAF mutation, right colon primary, poorly differentiated histology, and peritoneal involvement were associated with risk of death.Conclusions: In RAS wild-type colon cancer treated with cetuximab as salvage treatment, right colon primary was associated with poorer survival outcomes than left colon and rectal cancer. [ABSTRACT FROM AUTHOR]- Published
- 2017
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30. Evaluation of cardiopulmonary and inflammatory markers in dogs with heartworm infection during treatment with the 2014 American Heartworm Society recommended treatment protocol.
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Won-Kyoung Yoon, Ye-Won Kim, Sang-I L Suh, Ran Choi, Seung-Gon Lee, and Changbaig Hyun
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CARDIOPULMONARY bypass , *PARASITIC diseases , *INTERLEUKIN-6 , *ONCOSTATIN M , *DIAGNOSIS - Abstract
Background: Heartworm disease in dogs is a life-threatening parasitic disease. Although adulticide treatment with melarsomine has been proven to be the most effective, complications associated with adulticide treatment are major concerns for clinicians. Methods: This study evaluated the change in levels of D-dimer, interleukin-6, C-reactive protein and cardiac troponin I in 12 dogs with different severities of heartworm infection treated by the American Heartworm Society (AHS) recommended protocol during the treatment period. The serum levels of several markers were measured on the day of diagnosis (T-60), before the initiation of melarsomine therapy (T0), 1 day after the first injection (T1), 1 week after the first injection (T7), 1 month after the first injection (T30), 1 day after the second injection (T31), 1 day after the third injection (T32), 1 week after the third injection (T39), 1 month after the third injection (T62), 2 months after the third injection (T92), 3 months after the third injection (T122), and 6 months after the third injection (T182). Results: The serum levels of these markers were significantly different at the test time point after melarsomine treatment and also differed significantly according to the stage of heartworm disease in the dogs. Conclusion: This study found that monitoring of inflammatory and hemostatic markers in dogs with heartworm disease being treated with melarsomine might be beneficial in predicting the clinical outcomes and complications associated with melarsomine treatment. [ABSTRACT FROM AUTHOR]
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- 2017
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31. Comparative genomic analysis and characteristics of NCCP15740, the major type of enterotoxigenic Escherichia coli in Korea.
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Taesoo Kwon, Si-yun Chung, Young-Hee Jung, Su-Jin Jung, Sang-Gyun Roh, Je-Seop Park, Cheorl-Ho Kim, Won Kim, Young-Seok Bak, and Seung-Hak Cho
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COMPARATIVE genomics ,ESCHERICHIA coli ,DIARRHEA ,NUCLEOTIDE sequencing ,ENTEROTOXINS ,PUBLIC health - Abstract
Background: Enterotoxigenic Escherichia coli (ETEC) cause infectious diarrhea and diarrheal death. However, the genetic properties of pathogenic strains vary spatially and temporally, making prevention and treatment difficult. In this study, the genomic features of the major type of ETEC in Korea from 2003 to 2011 were examined by wholegenome sequencing of strain NCCP15740, and a comparative genomic analysis was performed with O6 reference strains. Results: The assembled genome size of NCCP15740 was 4,795,873 bp with 50.54% G+C content. Using rapid annotation using subsystem technology analysis, we predicted 4492 ORFs and 17 RNA genes. NCCP15740 was investigated for enterotoxin genes, colonization factor (CF) genes, serotype, multilocus sequence typing (MLST) profiles and classical and nonclassical virulence factors. NCCP15740 belonged to the O6:H16 serotype and possessed enterotoxin genes encoding heat-stable toxin (STh) and heat-labile toxin (LT); 87.5% of the O6 serotype strains possessed both toxin types. NCCP15740 carried the colonization factors CS2 and CS3, whereas most O6 strains carried CS2-CS3-CS21 (79.2%). NCCP15740 harbored fewer virulence factors (59.4%) than the average observed in other O6 strains (62.0%). Interestingly, NCCP15740 did not harbor any nonclassical virulence genes. Conclusions: The major type of ETEC in Korea had the same MLST sequence type as that of isolates from the USA obtained in 2011 and 2014, but had different colonization factor types and virulence profiles. These results provide important information for the development of an ETEC vaccine candidate. [ABSTRACT FROM AUTHOR]
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- 2017
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32. Breastfeeding is associated with enhanced learning abilities in school-aged children.
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Inhyang Kim, Johanna, Bung-Nyun Kim, Jae-Won Kim, Soon-Beom Hong, Min-Sup Shin, Hee Jeong Yoo, and Soo-Churl Cho
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BREASTFEEDING ,LEARNING ,INTELLECT ,LEARNING disabilities ,CHILDREN - Abstract
Objective: The majority of studies on the associations between breastfeeding and cognitive functioning have focused on IQ, with only a few investigating learning skills, and none of the latter adjusting for maternal IQ. We examined the association between breastfeeding and learning abilities in school-aged children using a cross-sectional design. Methods: We recruited 868 children, aged 8-11 years and parents completed the Learning Disability Evaluation Scale (LDES). Multivariable linear regression models were used and age, gender, area of residence, annual family income, maternal education, and maternal age at delivery, were included as covariates. Maternal IQ was added to further adjust for the effects of maternal cognitive ability. Path analysis was conducted to investigate the mediation effect of maternal IQ between breastfeeding and learning skills. Results: Children who were ever-breastfed had higher learning quotient scores on the LDES (p = 0.001) as well as higher scores on subscales related to speaking (p = 0.001), reading (p = 0.005), writing (p = 0.004), spelling (p = 0.003), and mathematical calculation (p = 0.003) than the never-breastfed participants. All of these variables remained significant after adjusting for gestational and socioeconomic factors and for maternal IQ as covariates. The path analysis showed that breastfeeding had both indirect and direct effects on the learning quotient. Conclusions: The results suggest that breastfeeding is positively associated with learning skills in school-aged children. [ABSTRACT FROM AUTHOR]
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- 2017
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33. The clinical and virological features of the first imported case causing MERS-CoV outbreak in South Korea, 2015.
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Ji Yeon Lee, You-Jin Kim, Eun Hee Chung, Dae-Won Kim, Ina Jeong, Yeonjae Kim, Mi-ran Yun, Sung Soon Kim, Gayeon Kim, Joon-Sung Joh, Lee, Ji Yeon, Kim, You-Jin, Chung, Eun Hee, Kim, Dae-Won, Jeong, Ina, Kim, Yeonjae, Yun, Mi-Ran, Kim, Sung Soon, Kim, Gayeon, and Joh, Joon-Sung
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MERS coronavirus ,MIDDLE East respiratory syndrome ,MYALGIA ,RESPIRATORY distress syndrome ,INFECTION prevention ,CHRONIC fatigue syndrome ,PUBLIC health - Abstract
Background: In 2015, the largest outbreak of Middle East respiratory syndrome coronavirus (MERS-CoV) infection outside the Middle East occurred in South Korea. We summarized the epidemiological, clinical, and laboratory findings of the first Korean case of MERS-CoV and analyzed whole-genome sequences of MERS-CoV derived from the patient.Case Presentation: A 68-year-old man developed fever and myalgia 7 days after returning to Korea, following a 10-day trip to the Middle East. Before diagnosis, he visited 4 hospitals, potentially resulting in secondary transmission to 28 patients. On admission to the National Medical Center (day 9, post-onset of clinical illness), he presented with drowsiness, hypoxia, and multiple patchy infiltrations on the chest radiograph. He was intubated (day 12) because of progressive acute respiratory distress syndrome (ARDS) and INF-α2a and ribavirin treatment was commenced. The treatment course was prolonged by superimposed ventilator associated pneumonia. MERS-CoV PCR results converted to negative from day 47 and the patient was discharged (day 137), following rehabilitation therapy. The complete genome sequence obtained from a sputum sample (taken on day 11) showed the highest sequence similarity (99.59%) with the virus from an outbreak in Riyadh, Saudi Arabia, in February 2015.Conclusions: The first case of MERS-CoV infection had high transmissibility and was associated with a severe clinical course. The patient made a successful recovery after early treatment with antiviral agents and adequate supportive care. This first case in South Korea became a super-spreader because of improper infection control measures, rather than variations of the virus. [ABSTRACT FROM AUTHOR]- Published
- 2017
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34. Risk factors of suicide attempt among people with suicidal ideation in South Korea: a cross-sectional study.
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Soo Beom Choi, Wanhyung Lee, Jin-Ha Yoon, Jong-Uk Won, Deok Won Kim, Choi, Soo Beom, Lee, Wanhyung, Yoon, Jin-Ha, Won, Jong-Uk, and Kim, Deok Won
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SUICIDE risk factors ,SELF-destructive behavior ,PUBLIC health ,SUICIDAL ideation ,KOREANS ,DEMOGRAPHY ,MENTAL depression ,EXERCISE ,SMOKING ,PSYCHOLOGICAL stress ,SUICIDAL behavior ,SURVEYS ,LOGISTIC regression analysis ,ACTIVITIES of daily living ,SOCIOECONOMIC factors ,CROSS-sectional method - Abstract
Background: Suicide is a serious public health concern worldwide, and the fourth leading cause of death in Korea. Few studies have focused on risk factors for suicide attempt among people with suicidal ideation. The aim of the present study was to investigate the risk factors and develop prediction models for suicide attempt among people with suicidal ideation in the Korean population.Method: This study included 1567 men and 3726 women aged 20 years and older who had suicidal ideation from the Korea National Health and Nutrition Examination Survey from 2007 to 2012. Among them, 106 men and 188 women attempted suicide. Multivariate logistic regression analysis with backward stepwise elimination was performed to find risk factors for suicide attempt. Sub-group analysis, dividing participants into under 50 and at least 50 years old was also performed.Results: Among people with suicidal ideation, age, education, cancer, and depressive disorder were selected as risk factors for suicide attempt in men. Age, education, national basic livelihood security, daily activity limitation, depressive disorder, stress, smoking, and regular exercise were selected in women. Area under curves of our prediction models in men and women were 0.728 and 0.716, respectively.Conclusions: It is important to pay attention to populations with suicidal ideation and the risk factors mentioned above. Prediction models using the determined risk factors could be useful to detect high-risk groups early for suicide attempt among people with suicidal ideation. It is necessary to develop specific action plans for these high-risk groups to prevent suicide. [ABSTRACT FROM AUTHOR]- Published
- 2017
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35. Increased fragility fracture risk in Korean women who snore: a 10-year population-based prospective cohort study.
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Soo Beom Choi, Il Suk Lyu, Wanhyung Lee, Deok Won Kim, Choi, Soo Beom, Lyu, Il Suk, Lee, Wanhyung, and Kim, Deok Won
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WOMEN ,SNORING ,WOMEN'S health ,BONE fractures ,CONFIDENCE intervals ,PHYSIOLOGY - Abstract
Background: Snoring is frequently associated with obstructive sleep apnea (OSA). Previous studies have shown that bone mineral density was significantly lower in patients with OSA than in controls; however, these studies did not focus on fractures. Fragility fractures can lead to long-term disabilities and a decrease in quality of life. The present study aimed to investigate the association between snoring and fragility fractures.Methods: This study included 2969 men and 3220 women aged 40 years and older from the Ansung and Ansan cohort studies in Korea. During a 10-year follow-up period, 129 and 273 fracture cases were reported in men and women, respectively.Results: Severe snoring (6-7 nights per week or sleep disturbance by snoring in the next room) was a statistically significant risk factor for fracture (p = 0.006, hazard ratio 1.68, 95% confidence interval 1.16-2.43) after adjusting for covariates related to fragility fracture in women. However, both snoring and severe snoring groups did not show significant associations with the fracture risk in men.Conclusions: Thus, information on the frequency of snoring in women may improve the accuracy of fragility fracture risk prediction, which can help in deciding whether intervention or treatment is necessary. [ABSTRACT FROM AUTHOR]- Published
- 2017
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36. Long-term results of early adjuvant concurrent chemoradiotherapy for high-risk, early stage uterine cervical cancer patients after radical hysterectomy.
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Sang-Won Kim, Mison Chun, Hee-Sug Ryu, Suk-Joon Chang, Tae Wook Kong, Young-Taek Oh, Seung Hee Kang, Kim, Sang-Won, Chun, Mison, Ryu, Hee-Sug, Chang, Suk-Joon, Kong, Tae Wook, Oh, Young-Taek, and Kang, Seung Hee
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ADJUVANT treatment of cancer , *CANCER treatment , *CHEMORADIOTHERAPY , *CANCER chemotherapy , *CANCER radiotherapy , *DIARRHEA , *HYSTERECTOMY , *LEUCOPENIA , *METASTASIS , *MULTIVARIATE analysis , *HEALTH outcome assessment , *TIME , *TUMOR classification , *KAPLAN-Meier estimator , *TUMOR treatment ,CERVIX uteri tumors - Abstract
Background: The aim of the present study was to investigate the long-term survival outcomes and toxicities associated with our experienced early administration of adjuvant concurrent chemoradiotherapy (CCRT).Methods: Ninety-eight patients with pelvic lymph node metastasis, positive resection margin, and/or parametrial invasion who received adjuvant CCRT between 1995 and 2011 were analyzed retrospectively. The first cycle of platinum-based adjuvant chemotherapy was initiated within 2-3 weeks after surgery (median, 12 days) and continued every 4 weeks for a total of 4 cycles. Adjuvant radiotherapy was performed during the second and third cycles of chemotherapy.Results: After a median follow-up period of 119 months for survivors, 13 patients (13.3%) experienced recurrence and 11 patients died of cancer during the follow-up period. The 5-year recurrence-free survival and cancer specific survival rates were 87.6% and 90.6%, respectively. Ninety-four patients (95.9%) received ≥3 cycles of chemotherapy. Total radiation dose of ≥45 Gy was delivered in 91 patients (92.9%). Grade 3-4 hematologic and gastrointestinal toxicities developed in 37 (37.8%) and 14 (14.3%) patients during CCRT, respectively.Conclusion: The present study confirmed the long-term safety and encouraging survival outcomes of early administration of adjuvant CCRT, suggesting the benefits of early time to initiation of adjuvant treatments. [ABSTRACT FROM AUTHOR]- Published
- 2017
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37. Is adjuvant chemotherapy necessary in pT1N1 gastric cancer?
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Hyun Beak Shin, Ji Yeong An, Seung Hyoung Lee, Yoon Young Choi, Jong Won Kim, Soo Sang Sohn, Sung Hoon Noh, Shin, Hyun Beak, An, Ji Yeong, Lee, Seung Hyoung, Choi, Yoon Young, Kim, Jong Won, Sohn, Soo Sang, and Noh, Sung Hoon
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GASTROINTESTINAL cancer treatment ,CANCER chemotherapy ,GASTRECTOMY complications ,TUMOR risk factors ,PROGRESSION-free survival ,ANTINEOPLASTIC agents ,CANCER relapse ,COMBINED modality therapy ,COMPARATIVE studies ,GASTRECTOMY ,RESEARCH methodology ,MEDICAL cooperation ,RESEARCH ,STOMACH tumors ,SURVIVAL analysis (Biometry) ,TUMOR classification ,EVALUATION research ,BODY mass index ,TREATMENT effectiveness - Abstract
Background: Due to a lack of consensus on adjuvant treatments for pT1N1 gastric cancer, surgeons face a dilemma when deciding treatments for patients with pT1N1 gastric cancer after gastrectomy. The objective of this study was to determine survival benefits of adjuvant chemotherapy and risk factors for tumor recurrence in gastric cancer patients with pT1N1.Methods: Between 1996 and 2010, 510 patients who underwent curative resection for pT1N1 gastric cancer at three institutes were divided into two groups: adjuvant chemotherapy group (N = 150) and surgery-only group (N = 360). Disease-free survival rates and risk factors for tumor recurrence were analyzed.Results: During the median follow-up of 78 months, 7.5% of patients experienced tumor recurrence (7.3% in adjuvant chemotherapy group and 7.5% in surgery-only group). The 5-year disease-free survival rate was 91.8% in the adjuvant chemotherapy group and 94.6% in the surgery-only group without significant difference between the two. In univariate analysis, older age (>65 years), male gender, body mass index <25 kg/m2, elevated gross type, and differentiated histology were associated with tumor recurrence. Multivariate analysis showed that advanced age and male gender were independent risk factors for tumor recurrence. In addition, adjuvant chemotherapy showed no benefitial effect on tumor recurrence in pT1N1 gastric cancer.Conclusions: Adjuvant chemotherapy did not show any oncologically benefitial effect on tumor recurrence, it might be unnecessary for pT1N1 gastric cancer after curative surgery. [ABSTRACT FROM AUTHOR]- Published
- 2017
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38. Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea.
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Taesoo Kwon, Won Kim, and Seung-Hak Cho
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VEROCYTOTOXINS , *ESCHERICHIA coli , *COMPARATIVE genomics , *HEMOLYSIS & hemolysins , *MICROBIAL virulence , *DISEASE outbreaks , *GENOMES - Abstract
Background: The Shiga toxin-producing Escherichia coli (STEC) O157 strain NCCP15739 and non-STEC O157 strain NCCP15738 were isolated from outbreaks in Korea. We characterized NCCP15739 and NCCP15738 by genome sequencing and a comparative genomic analysis using two additional strains, E. coli K-12 substr. MG1655 and O157:H7 EDL933. Results: Using the Illumina HiSeq 2000 platform and the RAST server, the whole genomes of NCCP15739 and NCCP15738 were obtained and annotated. NCCP15739 and NCCP15738 clustered with different E. coli strains based on a whole-genome phylogeny and multi-locus sequence typing analysis. Functional annotation clustering indicated enrichment for virulence plasmid and hemolysis-related genes in NCCP15739 and conjugation- and flagellum-related genes in NCCP15738. Defense mechanism- and pathogenicity-related pathways were enriched in NCCP15739 and pathways related to the assimilation of energy sources were enriched in NCCP15738. We identified 66 and 18 virulence factors from the NCCP15739 and NCCP15738 genome, respectively. Five and eight antibiotic resistance genes were identified in the NCCP15739 and NCCP15738 genomes, respectively. Based on a comparative analysis of phageassociated regions, NCCP15739 and NCCP15738 had specific prophages. The prophages in NCCP15739 carried virulence factors, but those in NCCP15738 did not, and no antibiotic resistance genes were found in the phage-associated regions. Conclusions: Our whole-genome sequencing and comparative genomic analysis revealed that NCCP15739 and NCCP15738 have specific genes and pathways. NCCP15739 had more genes (410), virulence factors (48), and phage-related regions (11) than NCCP15738. However, NCCP15738 had three more antibiotic resistance genes than NCCP15739. These differences may explain differences in pathogenicity and biological characteristics. [ABSTRACT FROM AUTHOR]
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- 2017
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39. Nuclear and structural dynamics during the establishment of a specialized effector secreting cell by Magnaporthe oryzae in living rice cells.
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Shipman, Emma N., Jones, Kiersun, Jenkinson, Cory B., Dong Won Kim, Jie Zhu, and Chang Hyun Khang
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PYRICULARIA grisea ,RICE blast disease ,MITOSIS ,HYPHAE of fungi ,PLANT-fungus relationships - Abstract
Background: To cause an economically important blast disease on rice, the filamentous fungus Magnaporthe oryzae forms a specialized infection structure, called an appressorium, to penetrate host cells. Once inside host cells, the fungus produces a filamentous primary hypha that differentiates into multicellular bulbous invasive hyphae (IH), which are surrounded by a host-derived membrane. These hyphae secrete cytoplasmic effectors that enter host cells presumably via the biotrophic interfacial complex (BIC). The first IH cell, also known as the side BIC-associated cell, is a specialized effector-secreting cell essential for a successful infection. This study aims to determine cellular processes that lead to the development of this effector-secreting first IH cell inside susceptible rice cells. Results: Using live-cell confocal imaging, we determined a series of cellular events by which the appressorium gives rise to the first IH cell in live rice cells. The filamentous primary hypha extended from the appressorium and underwent asymmetric swelling at its apex. The single nucleus in the appressorium divided, and then one nucleus migrated into the swollen apex. Septation occurred in the filamentous region of the primary hypha, establishing the first IH cell. The tip BIC that was initially associated with the primary hypha became the side BIC on the swollen apex prior to nuclear division in the appressorium. The average distance between the early side BIC and the nearest nucleus in the appressorium was estimated to be more than 32 µm. These results suggest an unknown mechanism by which effectors that are expressed in the appressorium are transported through the primary hypha for their secretion into the distantly located BIC. When M. oryzae was inoculated on heat-killed rice cells, penetration proceeded as normal, but there was no differentiation of a bulbous IH cell, suggesting its specialization for establishment of biotrophic infection. Conclusions: Our studies reveal cellular dynamics associated with the development of the effector-secreting first IH cell. Our data raise new mechanistic questions concerning hyphal differentiation in response to host environmental cues and effector trafficking from the appressorium to the BIC. [ABSTRACT FROM AUTHOR]
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- 2017
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40. Clinical, biochemical and molecular characterization of Korean patients with mucolipidosis II/III and successful prenatal diagnosis.
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Mina Yang, Sung Yun Cho, Hyung-Doo Park, Rihwa Choi, Young-Eun Kim, Jinsup Kim, Soo-Youn Lee, Chang-Seok Ki, Jong-Won Kim, Young Bae Sohn, Junghan Song, Dong-Kyu Jin, Yang, Mina, Cho, Sung Yun, Park, Hyung-Doo, Choi, Rihwa, Kim, Young-Eun, Kim, Jinsup, Lee, Soo-Youn, and Ki, Chang-Seok
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PRENATAL diagnosis ,AUTOSOMAL recessive polycystic kidney ,MOLECULAR genetics ,LYSOSOMAL storage diseases ,GENETIC carriers ,INBORN errors of metabolism diagnosis ,INBORN errors of metabolism ,GENETIC mutation ,POLYMERASE chain reaction ,TRANSFERASES ,PHENOTYPES ,GENOTYPES - Abstract
Background: Mucolipidosis types II and III (ML II/III) are autosomal recessive disorders caused by a deficiency in the lysosomal enzyme N-acetylglucosamine-1-phosphotransferase. We investigated the molecular genetic characteristics of the GNPTAB gene, which codes for the alpha/beta subunits of a phosphotransferase, in Korean ML II/III patients. We included prenatal tests and evaluated the spectrum of mutations in East Asian populations with ML II/III through a literature review.Methods: Seven patients from six families were enrolled in the study including two prenatal tests using chorionic villi samples. A diagnosis of ML II/III was made based on clinical findings and increases in serum lysosomal enzyme levels. PCR and direct sequencing were performed to identify GNPTAB mutations.Results: We found 14 mutant alleles including seven known mutations of c.2189delT (p.Leu730fs*7), c.1090C > T (p.Arg364*), c.2681G > A (p.Trp894*), c.3565C > T (p.Arg1189*), c.310C > T (p.Gln104*), c.1071G > A (p.Trp357*) and c.2574_2575delGA (p.Asn859Glnfs*2). Four were novel variants of unknown significance: c.992A > G (p.Tyr331Cys), c.2666 T > A (p.Leu889*), c.637-6 T > G (p.Thr213Phefs*11), and c.471_472delTT (p.Tyr158Serfs*8). Family studies revealed the probands to be compound heterozygotes. The fetuses carried the same GNPTAB mutations as the mucolipidosis II/III probands in the prenatal diagnosis.Conclusions: We identified GNPTAB mutations in all patients with ML II/III, but did not identify a hot spot in Korean patients. We successfully performed prenatal diagnosis using molecular investigation. [ABSTRACT FROM AUTHOR]- Published
- 2017
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41. Tenosynovitis caused by Scedosporium apiospermum infection misdiagnosed as an Alternaria species: a case report.
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Choon-Mee Kim, Sung-Chul Lim, Joa Kim, Hoe-Soo Jang, Jong-Hun Chung, Na-Ra Yun, Dong-Min Kim, Piyush Jha, Babita Jha, Seok Won Kim, Sook Jin Jang, Jong Hee Shin, Kim, Choon-Mee, Lim, Sung-Chul, Kim, Joa, Jang, Hoe-Soo, Chung, Jong-Hun, Yun, Na-Ra, Kim, Dong-Min, and Jha, Piyush
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ALTERNARIA ,TENOSYNOVITIS ,HOST plants ,MYCETOMA ,NUCLEOTIDE sequencing ,DIAGNOSIS ,COMMUNICABLE disease treatment ,ANTIFUNGAL agents ,TYPE 2 diabetes complications ,FLUCONAZOLE ,DEBRIDEMENT ,DIAGNOSTIC errors ,DNA ,FUNGI ,HAND ,JOINTS (Anatomy) ,MAGNETIC resonance imaging ,MYCOSES ,TYPE 2 diabetes ,IMMUNOCOMPROMISED patients ,SEQUENCE analysis ,DISEASE complications ,THERAPEUTICS - Abstract
Background: Scedosporium apiospermum, which can usually be isolated from soil, polluted stream water and decaying vegetation, is increasingly recognized as an opportunistic dematiaceous fungus. The mortality rate of infection in immunocompromised hosts is over 50%. S. apiospermum is commonly responsible for dermal and epidermal infections (i.e., mycetoma) after traumatic penetration.Case Presentation: A 73-year-old woman was admitted to our hospital complaining of painful swelling and tenderness on the dorsum of the proximal left wrist and hand. The symptoms had persisted for approximately 2 months. A physical examination revealed a 4 x 3 cm, poorly defined, erythematous papule, which was fluctuant, with pustules and crusts on the dorsum of the left hand.Conclusions: We report a very rare case of tenosynovitis caused by S. apiospermum infection. We identified the infectious agent via molecular DNA sequencing. The infectious agent was initially misidentified as an Alternaria species by microscopic examination with lactophenol cotton blue (LPCB) staining. The infection was successfully treated with debridement and adjuvant fluconazole therapy. [ABSTRACT FROM AUTHOR]- Published
- 2017
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42. Quadriplegia caused by an epidural abscess occurring at the same level of cervical destructive spondyloarthropathy: a case report.
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Jun-Seok Lee, Ji-Hyun Ryu, Jong-Tae Park, Ki-Won Kim, Lee, Jun-Seok, Ryu, Ji-Hyun, Park, Jong-Tae, and Kim, Ki-Won
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QUADRIPLEGIA ,EPIDURAL abscess ,SPONDYLOARTHROPATHIES ,CERVICAL vertebrae diseases ,SURGICAL decompression - Abstract
Background: Destructive spondyloarthropathy (DSA) is one of the major complications in patients undergoing long-term hemodialysis. To the best of our knowledge, an epidural abscess occurring at the level of preexisting cervical DSA has not been well described in the literature. We report a unique case of quadriplegia caused by an epidural abscess occurring at the same level of preexisting cervical DSA.Case Presentation: A 49-year-old woman was transferred to our emergency department with 5 days of sepsis, drowsy mental status, and quadriplegia below the C5 level. The patient had a medical history of hemodialysis for 10 years. Magnetic resonance imaging showed spinal cord compression by an epidural abscess at the level of preexisting cervical DSA. Blood culture revealed methicillin-sensitive Staphylococcus aureus. Infection of the arteriovenous (AV) shunt was considered as the primary focus of sepsis and pyogenic spondylitis. We performed an emergent open door laminoplasty and the vascular team debrided the infected AV shunt site. Approximately 8 months after surgery, the patient was able to perform activities of daily living somewhat independently.Conclusions: Emergent surgical decompression and intensive medical care led to successful recovery from a septic and quadriplegic state in this patient. When diagnosing a patient who has undergone long-term hemodialysis presenting with neurologic deficits, the possibility of infectious spondylitis at the same level as DSA should be considered. [ABSTRACT FROM AUTHOR]- Published
- 2017
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43. Tat-HSP22 inhibits oxidative stress-induced hippocampal neuronal cell death by regulation of the mitochondrial pathway.
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Hyo Sang Jo, Dae Won Kim, Min Jea Shin, Su Bin Cho, Jung Hwan Park, Chi Hern Lee, Eun Ji Yeo, Yeon Joo Choi, Hyeon Ji Yeo, Eun Jeong Sohn, Ora Son, Sung-Woo Cho, Duk-Soo Kim, Yeon Hee Yu, Keun Wook Lee, Jinseu Park, Won Sik Eum, and Soo Young Choi
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OXIDATIVE stress , *CELL death , *CELLULAR control mechanisms , *MITOCHONDRIA , *NEURONS , *HYDROGEN peroxide , *CHIMERIC proteins , *DISEASES - Abstract
Oxidative stress plays an important role in the progression of various neuronal diseases including ischemia. Heat shock protein 22 (HSP22) is known to protect cells against oxidative stress. However, the protective effects and mechanisms of HSP22 in hippocampal neuronal cells under oxidative stress remain unknown. In this study, we determined whether HSP22 protects against hydrogen peroxide (H2O2)-induced oxidative stress in HT-22 using Tat-HSP22 fusion protein. We found that Tat-HSP22 transduced into HT-22 cells and that H2O2-induced cell death, oxidative stress, and DNA damage were significantly reduced by Tat-HSP22. In addition, Tat-HSP22 markedly inhibited H2O2-induced mitochondrial membrane potential, cytochrome c release, cleaved caspase-3, and Bax expression levels, while Bcl-2 expression levels were increased in HT-22 cells. Further, we showed that Tat-HSP22 transduced into animal brain and inhibited cleaved-caspase-3 expression levels as well as significantly inhibited hippocampal neuronal cell death in the CA1 region of animals in the ischemic animal model. In the present study, we demonstrated that transduced Tat-HSP22 attenuates oxidative stress-induced hippocampal neuronal cell death through the mitochondrial signaling pathway and plays a crucial role in inhibiting neuronal cell death, suggesting that Tat-HSP22 protein may be used to prevent oxidative stress-related brain diseases including ischemia. [ABSTRACT FROM AUTHOR]
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- 2017
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44. The Cohort for Childhood Origin of Asthma and allergic diseases (COCOA) study: design, rationale and methods
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Hyeon Jong Yang, Kyung-Sook Lee, Ho Kim, Joo Shil Lee, Yee-Jin Shin, Kang Mo Ahn, Youn Ho Shin, Jong Han Leem, Byoung Ju Kim, Kyung Won Kim, Soo Jong Hong, Ju Hee Seo, Eun Jin Kim, Dong In Suh, So-Yeon Lee, Hwan-Cheol Kim, Cheol Min Lee, Se Young Oh, and Hyoung Yoon Chang
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Research design ,Hypersensitivity, Immediate ,Male ,Pediatrics ,Allergy ,Urban Population ,Epigenesis, Genetic ,Study Protocol ,Pregnancy ,Longitudinal Studies ,Prospective Studies ,Prospective cohort study ,Child ,Skin ,Air Pollutants ,medicine.diagnostic_test ,Microbiota ,food and beverages ,Environmental exposure ,Fetal Blood ,Maternal Exposure ,Research Design ,Child, Preschool ,Prenatal Exposure Delayed Effects ,Cohort ,Paternal Exposure ,Female ,Disease Susceptibility ,Cohort study ,Food Hypersensitivity ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Nutritional Status ,Dermatitis, Atopic ,Environmental health ,Republic of Korea ,medicine ,Humans ,Respiratory sounds ,Asthma ,Respiratory Sounds ,business.industry ,Infant, Newborn ,Infant ,DNA ,Environmental Exposure ,medicine.disease ,Rhinitis, Allergic ,Gene-environment interaction ,Nutrition Assessment ,Psychologic stress ,business ,Stress, Psychological - Abstract
Background This paper describes the background, aim, and design of a prospective birth-cohort study in Korea called the COhort for Childhood Origin of Asthma and allergic diseases (COCOA). COCOA objectives are to investigate the individual and interactive effects of genetics, perinatal environment, maternal lifestyle, and psychosocial stress of mother and child on pediatric susceptibility to allergic diseases. Methods/Design The participants in COCOA represents a Korean inner-city population. Recruitment started on 19 November, 2007 and will continue until 31 December, 2015. Recruitment is performed at five medical centers and eight public-health centers for antenatal care located in Seoul. Participating mother-baby pairs are followed from before birth to adolescents. COCOA investigates whether the following five environmental variables contribute causally to the development and natural course of allergic diseases: (1) perinatal indoor factors (i.e. house-dust mite, bacterial endotoxin, tobacco smoking, and particulate matters 2.5 and 10), (2) perinatal outdoor pollutants, (3) maternal prenatal psychosocial stress and the child’s neurodevelopment, (4) perinatal nutrition, and (5) perinatal microbiome. Cord blood and blood samples from the child are used to assess whether the child’s genes and epigenetic changes influence allergic-disease susceptibility. Thus, COCOA aims to investigate the contributions of genetics, epigenetics, and various environmental factors in early life to allergic-disease susceptibility in later life. How these variables interact to shape allergic-disease susceptibility is also a key aim. The COCOA data collection schedule includes 11 routine standardized follow-up assessments of all children at 6 months and every year until 10 years of age, regardless of allergic-disease development. The mothers will complete multiple questionnaires to assess the baseline characteristics, the child’s exposure to environmental factors, maternal pre- and post-natal psychological stress, and the child’s neurodevelopment, nutritional status, and development of allergic and respiratory illnesses. The child’s microbiome, genes, epigenetics, plasma cytokine levels, and neuropsychological status, the microbiome of the residence, and the levels of indoor and outdoor pollutants are measured by standard procedures. Discussion The COCOA study will improve our understanding of how individual genetic or environmental risk factors influence susceptibility to allergic disease and how these variables interact to shape the phenotype of allergic diseases.
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- 2014
45. GNAQ mutation in a patient with metastatic mucosal melanoma
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Kevin B. Kim, Jonathan L. Curry, Carlos A. Torres-Cabala, Dae Won Kim, Sapna Pradyuman Patel, and Chung-Young Kim
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Neuroblastoma RAS viral oncogene homolog ,Male ,Pathology ,medicine.medical_specialty ,Cancer Research ,medicine.medical_treatment ,Case Report ,medicine.disease_cause ,Targeted therapy ,GNAQ ,Surgical oncology ,Genetics ,Medicine ,Humans ,Neoplasm Metastasis ,neoplasms ,Melanoma ,Mutation ,Mucous Membrane ,GNA11 ,business.industry ,Mucosal melanoma ,Middle Aged ,medicine.disease ,GTP-Binding Protein alpha Subunits ,Oncology ,Cancer research ,GTP-Binding Protein alpha Subunits, Gq-G11 ,business - Abstract
Background Mucosal melanomas represent about 1% of all melanoma cases and classically have a worse prognosis than cutaneous melanomas. Due to the rarity of mucosal melanomas, only limited clinical studies with metastatic mucosal melanoma are available. Mucosal melanomas most commonly contain mutations in the gene CKIT, and treatments have been investigated using targeted therapy for this gene. Mutations in mucosal melanoma are less common than in cutaneous or uveal melanomas and occur in descending order of frequency as: CKIT (20%), NRAS (5%) or BRAF (3%). Mutations in G-alpha proteins, which are associated with activation of the mitogen-activated protein kinase pathway, have not been reported in mucosal melanomas. These G-alpha protein mutations occur in the genes GNAQ and GNA11 and are seen at a high frequency in uveal melanomas, those melanomas that begin in the eye. Case presentation A 59-year old Caucasian male was diagnosed with a mucosal melanoma after evaluation for what was thought to be a hemorrhoid. Molecular analysis of the tumor revealed a GNAQ mutation. Ophthalmologic exam did not disclose a uveal melanoma. Conclusion Here we report, to our knowledge, the first known case of GNAQ mutation in a patient with metastatic mucosal melanoma.
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- 2014
46. Association between the GRM7 rs3792452 polymorphism and attention deficit hyperacitiveity disorder in a Korean sample.
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Park, Subin, Sun-Woo Jung, Boong-Nyun Kim, Soo-Churl Cho, Min-Sup Shin, Jae-Won Kim, Hee Jeong Yoo, Dae-Yeon Cho, Un-Sun Chung, Jung-Woo Son, and Hyo-Won Kim
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ATTENTION-deficit hyperactivity disorder ,GENETIC polymorphisms ,GLUTAMATE receptors ,GENOTYPE-environment interaction ,STATE-Trait Anxiety Inventory for Children - Abstract
Background: The purpose of this study was to investigate the association between the ionotropic and glutamate receptors, N-methyl D-asparate 2A (GRIN2A) and 2B (GRIN2B), and the metabotropic glutamate receptor mGluR7 (GRM7) gene polymorphisms and attention-deficit hyperactivity disorder (ADHD) in Korean population. Methods: We conducted a case-control analysis of 202 ADHD subjects and 159 controls, performed a transmission disequilibrium test (TDT) on 149 trios, and compared scores from the continuous performance test (CPT), the Children's Depression Inventory (CDI), and the State-Trait Anxiety Inventory for Children (STAIC) according to the genotype of the glutamate receptor genes. Results: There were no significant differences in the genotype or allele frequencies of the GRIN2A rs8049651, GRIN2B rs2284411, or GRM7 rs37952452 polymorphisms between the ADHD and control groups. For 148 ADHD trios, the TDT analysis also showed no preferential transmission of the GRIN2A rs8049651 or GRIN2B rs2284411 polymorphisms. However, the TDT analysis of the GRM7 rs3792452 polymorphism showed biased transmission of the G allele (?2 = 4.67, p = 0.031). In the ADHD probands, the subjects with GG genotype in the GRM7 rs37952452 polymorphism had higher mean T-scores for omission errors on the CPT than did those with the GA or AA genotype (t = 3.38, p = 0.001). In addition, the ADHD subjects who were homozygous for the G allele in the GRM7 rs37952452 polymorphism had higher STAIC-T (t = 5.52, p < 0.001) and STAIC-S (t = 2.74, p = 0.007) scores than did those with the GA or AA genotype. Conclusions: These results provide preliminary evidence of an association between the GRM7 rs37952452 polymorphism and selective attention deficit and anxiety found within the Korean ADHD population. [ABSTRACT FROM AUTHOR]
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- 2013
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47. Neogenin expression may be inversely correlated to the tumorigenicity of human breast cancer.
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Jeong Eon Lee, Hee Joung Kim, Ji Yeon Bae, Seok Won Kim, Joon-Suk Park, Hyuk Jai Shin, Wonshik Han, Sung-Won Kim, Kyung-Sun Kang, and Dong-Young Noh
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ONCOGENIC viruses ,BREAST cancer ,MORPHOGENESIS ,CARCINOGENESIS ,EPITHELIAL cells - Abstract
Background: Neogenin is expressed in cap cells that have been suggested to be mammary stem or precursor cells. Neogenin is known to play an important role in mammary morphogenesis; however its relationship to tumorigenesis remains to be elucidated. Methods: To compare the expression levels of neogenin in cells with different tumorigenicity, the expression levels in M13SV1, M13SV1R2 and M13SV1R2N1 cells, which are immortalized derivatives of type I human breast epithelial cells, were evaluated. Then we measured the expression level of neogenin in paired normal and cancer tissues from eight breast cancer patients. Tissue array analysis was performed for 54 human breast tissue samples with different histology, and the results were divided into four categories (none, weak, moderate, strong) by a single well-trained blinded pathologist and statistically analyzed. Results: The nontumorigenic M13SV1 cells and normal tissues showed stronger expression of neogenin than the M13SV1R2N1 cells and the paired cancer tissues. In the tissue array, all (8/8) of the normal breast tissues showed strong neogenin expression, while 93.5% (43/46) of breast cancer tissues had either no expression or only moderate levels of neogenin expression. There was a significant difference, in the expression level of neogenin, in comparisons between normal and infiltrating ductal carcinoma (p < 0.001). Conclusion: Neogenin may play a role in mammary carcinogenesis as well as morphogenesis, and the expression may be inversely correlated with mammary carcinogenicity. The value of neogenin as a potential prognostic factor needs further evaluation. [ABSTRACT FROM AUTHOR]
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- 2005
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48. Young age: an independent risk factor for disease-free survival in women with operable breast cancer.
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Wonshik Han, Seok Won Kim, In Ae Park, Daehee Kang, Sung-Won Kim, Yeo-Kyu Youn, Seung Keun Oh, Kuk Jin Choe, and Dong-Young Noh
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BREAST cancer , *CANCER risk factors , *YOUNG women , *CANCER patients , *TUMORS , *DISEASES - Abstract
Background: The incidence of breast cancer in young women (age < 35) is low. The biology of the disease in this age group is poorly understood, and there are conflicting data regarding the prognosis for these women compared to older patients. Methods: We retrospectively analyzed 2040 consecutive primary invasive breast cancer patients who underwent surgical procedures at our institution between 1990 and 1999. The younger age group was defined as patients aged <35 years at the time of diagnosis. The clinicopathological characteristics and treatment outcomes were compared between younger and older age groups. Results: A total of 256 (12.5%) patients were aged <35. There was a significantly higher incidence of nuclear grade 3 and medullary histological-type tumors in younger patients compared to older patients. Axillary lymph node status, T stage, histological grade, c-erbB2 expression and estrogen receptor status did not differ significantly between the two age groups. Younger patients had a greater probability of recurrence and death at all time periods. Although there was no significant difference in disease-free survival between the two age groups in lymph node-negative patients, the younger group showed worse prognosis among lymph node-positive patients (p < 0.001). In multivariate analysis, young age remained a significant predictor of recurrence (p = 0.010). Conclusion: Young age (<35) is an independent risk factor for relapse in operable breast cancer patients. [ABSTRACT FROM AUTHOR]
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- 2004
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49. Isoprene production by Escherichia coli through the exogenous mevalonate pathway with reduced formation of fermentation byproducts.
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Jung-Hun Kim, Chonglong Wang, Hui-Jung Jang, Myeong-Seok Cha, Ju-Eon Park, Seon-Yeong Jo, Eui-Sung Choi, and Seon-Won Kim
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ESCHERICHIA coli enzymes ,ISOPRENE ,GENE expression ,FERMENTATION ,ARTIFICIAL rubber ,ELASTOMERS - Abstract
Background: Isoprene, a volatile C5 hydrocarbon, is an important platform chemical used in the manufacturing of synthetic rubber for tires and various other applications, such as elastomers and adhesives. Results: In this study, Escherichia coli MG1655 harboring Populus trichocarpa isoprene synthase (PtispS) and the exogenous mevalonate (MVA) pathway produced 80 mg/L isoprene. Codon optimization and optimal expression of the ispS gene via adjustment of the RBS strength and inducer concentration increased isoprene production to 199 and 337 mg/L, respectively. To augment expression of MVA pathway genes, the MVA pathway was cloned on a high-copy plasmid (pBR322 origin) with a strong promoter (P
trc ), which resulted in an additional increase in isoprene production up to 956 mg/L. To reduce the formation of byproducts derived from acetyl-CoA (an initial substrate of the MVA pathway), nine relevant genes were deleted to generate the E. coli AceCo strain (E. coli MG1655 ΔackA-pta, poxB, ldhA, dld, adhE, pps, and atoDA). The AceCo strain harboring the ispS gene and MVA pathway showed enhanced isoprene production of 1832 mg/L in flask culture with reduced accumulation of byproducts. Conclusions: We achieved a 23-fold increase in isoprene production by codon optimization of PtispS, augmentation of the MVA pathway, and deletion of genes involved in byproduct formation. [ABSTRACT FROM AUTHOR]- Published
- 2016
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50. Coordinated inhibition of C/EBP by Tribbles in multiple tissues is essential for Caenorhabditis elegans development.
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Kyung Won Kim, Thakur, Nishant, Piggott, Christopher A., Shizue Omi, Polanowska, Jolanta, Yishi Jin, and Pujol, Nathalie
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TRANSCRIPTION factors , *CAENORHABDITIS elegans genetics , *MITOGEN-activated protein kinases , *PROTEIN kinase inhibitors , *GENETIC transcription , *SUPPRESSOR mutation , *GENETIC regulation , *CELLULAR signal transduction - Abstract
Background: Tribbles proteins are conserved pseudokinases that function to control kinase signalling and transcription in diverse biological processes. Abnormal function in human Tribbles has been implicated in a number of diseases including leukaemia, metabolic syndromes and cardiovascular diseases. Caenorhabditis elegans Tribbles NIPI-3 was previously shown to activate host defense upon infection by promoting the conserved PMK-1/p38 mitogen-activated protein kinase (MAPK) signalling pathway. Despite the prominent role of Tribbles proteins in many species, our knowledge of their mechanism of action is fragmented, and the in vivo functional relevance of their interactions with other proteins remains largely unknown. Results: Here, by characterizing nipi-3 null mutants, we show that nipi-3 is essential for larval development and viability. Through analyses of genetic suppressors of nipi-3 null mutant lethality, we show that NIPI-3 negatively controls PMK-1/p38 signalling via transcriptional repression of the C/EBP transcription factor CEBP-1. We identified CEBP-1's transcriptional targets by ChIP-seq analyses and found them to be enriched in genes involved in development and stress responses. Unlike its cell-autonomous role in innate immunity, NIPI-3 is required in multiple tissues to control organismal development. Conclusions: Together, our data uncover an unprecedented crosstalk involving multiple tissues, in which NIPI-3 acts as a master regulator to inhibit CEBP-1 and the PMK-1/p38 MAPK pathway. In doing so, it keeps innate immunity in check and ensures proper organismal development. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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