36 results on '"Rodríguez Carmen"'
Search Results
2. Adjusted D-dimer cutoff levels to rule out pulmonary embolism in patients hospitalized for COPD exacerbation: results from the SLICE trial
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Rodríguez, Carmen, Jara-Palomares, Luis, Tabernero, Eva, Tenes, Andrés, González, Sara, Briceño, Winnifer, Lobo, José Luis, Morillo, Raquel, Bikdeli, Behnood, and Jiménez, David
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- 2022
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3. Chronic diseases in the geriatric population: morbidity and use of primary care services according to risk level
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Barrio-Cortes, Jaime, Castaño-Reguillo, Almudena, Beca-Martínez, María Teresa, Bandeira-de Oliveira, Mariana, López-Rodríguez, Carmen, and Jaime-Sisó, María Ángeles
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- 2021
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4. Biosafety steps in the manufacturing process of spray-dried plasma: a review with emphasis on the use of ultraviolet irradiation as a redundant biosafety procedure
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Blázquez, Elena, Rodríguez, Carmen, Ródenas, Jesús, Segalés, Joaquim, Pujols, Joan, and Polo, Javier
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- 2020
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5. Tolerability of IM penicillin G benzathine diluted or not with local anesthetics, or different gauge needles for syphilis treatment: a randomized clinical trial
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Estrada, Vicente, Santiago, Eva, Cabezas, Inmaculada, Cotano, Juan Luis, Carrió, Juan Carlos, Fuentes-Ferrer, Manuel, Vera, Mar, Ayerdi, Oskar, Rodríguez, Carmen, López, Laura, Cabello, Noemí, Núñez, María José, Puerta, Teresa, Sagastagoitia, Iñigo, and Del Romero, Jorge
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- 2019
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6. DBP rs16846876 and rs12512631 polymorphisms are associated with progression to AIDS naïve HIV-infected patients: a retrospective study
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JIMÉNEZ-SOUSA, María Ángeles, JIMÉNEZ, José Luis, FERNÁNDEZ-RODRÍGUEZ, Amanda, BELLÓN, José María, RODRÍGUEZ, Carmen, RIERA, Melchor, PORTILLA, Joaquín, CASTRO, Ángeles, MUÑOZ-FERNÁNDEZ, María Ángeles, and RESINO, Salvador
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- 2019
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7. Extent of third-order linkage disequilibrium in a composite line of Iberian pigs
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Gomez-Raya, Luis, Silio, Luis, Rauw, Wendy M., Gracia-Cortés, Luis Alberto, and Rodríguez, Carmen
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- 2018
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8. Adjusted D-dimer cutoff levels to rule out pulmonary embolism in patients hospitalized for COPD exacerbation: results from the SLICE trial
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Instituto de Salud Carlos III, Chest Foundation, Sociedad Española de Neumología y Cirugía Torácica, Asociación de Neumología y Cirugía Torácica del Sur (España), Daiichi-Sankyo, Rodríguez, Carmen, Jara Palomares, Luis, Tabernero, Eva, Tenes, Andrés, González, Sara, Briceño. Winnifer, Lobo, José Luis, Morillo-Guerrero, Raquel, Bikdeli, Behnood, Jiménez, David, Instituto de Salud Carlos III, Chest Foundation, Sociedad Española de Neumología y Cirugía Torácica, Asociación de Neumología y Cirugía Torácica del Sur (España), Daiichi-Sankyo, Rodríguez, Carmen, Jara Palomares, Luis, Tabernero, Eva, Tenes, Andrés, González, Sara, Briceño. Winnifer, Lobo, José Luis, Morillo-Guerrero, Raquel, Bikdeli, Behnood, and Jiménez, David
- Abstract
[Background] For patients with suspected pulmonary embolism (PE), age- or clinically-adjusted D-dimer threshold level can be used to define a negative test that safely excludes PE and reduces the use of imaging. However, the utility of this approach in patients hospitalized for chronic obstructive pulmonary disease (COPD) exacerbation is undefined., [Methods] We ran an analysis of the patients hospitalized for COPD exacerbation and randomized to the intervention in the SLICE trial. Using the conventional strategy as the reference, we compared the proportion of patients with a negative D-dimer result, and the negative predictive value and sensitivity of three D-dimer threshold strategies for initial PE or subsequent diagnosis of venous thromboembolism (VTE): the age-adjusted strategy, the Wells-adjusted strategy, and the YEARS-adjusted strategy., [Results] We included 368 patients. Using a conventional threshold, 182 (49.5%) patients had negative D-dimer values, of whom 1 (0.6%) had PE (sensitivity, 94.1%). The use of an age-adjusted threshold increased the number of patients in whom PE could be excluded from 182 to 233 patients (63.3%), and the proportion of false-negative findings increased from 0.5% to 1.7% (sensitivity, 76.5%). With the use of the Wells or YEARS strategies, 64.4% and 71.5% had negative values, and the proportion of false-negative findings was 2.5% (sensitivity, 64.7%) and 2.7% (sensitivity, 58.8%), respectively., [Conclusions] In patients hospitalized for COPD exacerbation, compared with the conventional strategy, age- or clinically-adjusted strategies of D-dimer interpretation were associated with a larger proportion of patients in whom PE was ruled out with a higher failure rate., [Trial Registration] ClinicalTrials.gov number: NCT02238639.
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- 2022
9. DALBACEN cohort: dalbavancin as consolidation therapy in patients with endocarditis and/or bloodstream infection produced by gram-positive cocci
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Hidalgo-Tenorio, Carmen, Vinuesa García, David, Plata-Ciezar, Antonio, Martín-Dávila, Pilar, Iftimie, Simona, Sequera, Sergio, Loeches, Belén, López-Cortés, Luis Eduardo, Fariñas, María del Carmen, Fernández-Roldán, Concepción, Javier-Martinez, Rosario, Muñoz García, Patricia, Arenas-Miras, Maria del Mar, Martínez-Marcos, Francisco Javier, Miró, José María, Herrero-Rodríguez, Carmen, Bereciartúa, Elena, De Jesus, Samantha E., Pasquau-Liaño, Juan, Hidalgo-Tenorio, Carmen, Vinuesa García, David, Plata-Ciezar, Antonio, Martín-Dávila, Pilar, Iftimie, Simona, Sequera, Sergio, Loeches, Belén, López-Cortés, Luis Eduardo, Fariñas, María del Carmen, Fernández-Roldán, Concepción, Javier-Martinez, Rosario, Muñoz García, Patricia, Arenas-Miras, Maria del Mar, Martínez-Marcos, Francisco Javier, Miró, José María, Herrero-Rodríguez, Carmen, Bereciartúa, Elena, De Jesus, Samantha E., and Pasquau-Liaño, Juan
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[Objectives] To analyse the effectiveness of dalbavancin (DBV) in clinical practice as consolidation therapy in patients with bloodstream infection (BSI) and/or infective endocarditis (IE) produced by gram-positive cocci (GPC), as well as its safety and pharmacoeconomic impact. [Methods] A multicentre, observational and retrospective study was conducted of hospitalised patients with IE and/or BSI produced by GPC who received at least one dose of DBV. Clinical response was assessed during hospitalization, at 3 months and at 1 year. [Results] Eighty-three patients with median age of 73 years were enrolled; 73.5% were male; 59.04% had BSI and 49.04% IE (44.04% prosthetic valve IE, 32.4% native IE, 23.5% pacemaker lead). The most frequently isolated microorganism was Staphylococcus aureus in BSI (49%) and coagulase-negative staphylococci in IE (44.1%). All patients with IE were clinically cured in hospital; at 12 months, there was 2.9% loss to follow-up, 8.8% mortality unrelated to IE, and 2.9% therapeutic failure rate. The percentage effectiveness of DBV to treat IE was 96.7%. The clinical cure rate for BSI was 100% during hospital stay and at 3 months; there were no recurrences or deaths during the follow-up. No patient discontinued treatment for adverse events. The saving in hospital stay was 636 days for BSI (315,424.20€) and 557 days for IE (283,187.45€). [Conclusions] DBV is an effective consolidation antibiotic therapy in clinically stabilized patients with IE and/or BSI. It proved to be a cost-effective treatment, reducing the hospital stay, thanks to the pharmacokinetic/pharmacodynamic profile of this drug.
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- 2019
10. Sexualized drug injection among men who have sex with men in Madrid and Barcelona as the first episode of drug injecting.
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Guerras, Juan-Miguel, García de Olalla, Patricia, Belza, María José, de la Fuente, Luis, Palma, David, del Romero, Jorge, García-Pérez, Jorge-Néstor, Hoyos, Juan, the Methysos Project Group, Donat, Marta, del Carmen Burgos, María, Romero, César Pérez, Bueno, José Antonio San Juan, Urrestarazu, Francisca Román, Ospina, Jesus E, Gutiérrez, Miguel Alarcón, Ayerdi, Oskar, Rodríguez, Carmen, del Corral Del Campo, Sonsoles, and Zamora, Natividad Jerez
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INJECTIONS ,HIV infection transmission ,RISK-taking behavior ,POISSON regression ,HEPATITIS B ,BLOODBORNE infections ,HARM reduction - Abstract
Background: We estimate the prevalence of drug injection, the variables associated with having ever injected and the proportion of ever injectors whose first drug injection was for having sex; we describe the first drug injection episode, analyze the drugs most frequently injected and estimate the prevalence of risky injecting behaviors. Methods: The participants were 3387 MSM without a previous HIV diagnosis attending four HIV/STI diagnosis services in Madrid and Barcelona. Lifetime prevalence and prevalence ratios (PRs) by different factors were calculated using Poisson regression models with robust variance. We compared the characteristics of first drug injection episode, lifetime injection and risky injecting behaviors of those whose first injection was for sex (FIS) with those whose was not (non-FIS). Results: Lifetime prevalence of injection was 2.1% (CI 1.7–2.7). In the multivariate analysis, it was strongly associated with having been penetrated by more than five men in the last 12 months (aPR = 10.4; CI 2.5–43.4) and having met most of their partners at private parties (aPR = 7.5; CI 4.5–12.3), and less strongly with other factors. Of those who had ever injected drugs, 81.9% injected for sex the first time they injected drugs (FIS). At first injection, FIS participants had a mean age of 31 years, 62.7% used mephedrone and 32.2% methamphetamine on that occasion. Of this FIS group 39.0% had ever shared drugs or equipment and 82.6% had always shared for sex. Some 30.8% of non-FIS reported having also injected drugs for sex later on. Conclusions: Only two out of a hundred had ever injected, most to have sex and with frequent drug or injecting equipment sharing. Injecting for sex is the most common first episode of drug injection and is the most efficient risky behavior for the transmission of HIV, hepatitis B or C and other blood-borne infections. MSM participating in private parties should be considered a priority group for prevention policies. [ABSTRACT FROM AUTHOR]
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- 2021
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11. Class-modeling analysis reveals T-cell homeostasis disturbances involved in loss of immune control in elite controllers
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Benito, José M., Ortiz, María C., León García, Agathe, Sarabia, Luis A., Ligos, José M., Montoya, María, García, Marcial, Ruiz Mateos, Ezequiel, Palacios, Rosario, Cabello, Alfonso, Restrepo, Clara, Rodríguez, Carmen, del Romero, Jorge, Leal, Manuel, Munoz Fernández, María A., Alcamí, José, García Alcaide, Felipe, Górgolas, Miguel, Rallón, Norma, ECRIS integrated in the Spanish AIDS Research Netw, Instituto de Salud Carlos III, Unión Europea. Fondo Europeo de Desarrollo Regional (FEDER/ERDF), Instituto de Investigación Sanitaria de la Fundación Jiménez Díaz, Ministerio de Economía y Competitividad (España), European Regional Development Fund (ERDF/FEDER), and Instituto de Investigacion Sanitaria Fundacion Jimenez Diaz
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0301 basic medicine ,CD4-Positive T-Lymphocytes ,Male ,FUNCTIONAL CURE ,Matemáticas ,lcsh:Medicine ,HIV Infections ,CD8-Positive T-Lymphocytes ,ACTIVATION ,ANTIRETROVIRAL THERAPY ,Medicine ,Homeostasis ,IMMUNODEFICIENCY ,Effector ,CD8 exhaustion ,CD4 T-cell loss ,General Medicine ,Química ,Middle Aged ,ABSENCE ,Chemistry ,Cèl·lules T ,T cell homeostatic parameters ,Disease Progression ,Female ,Elite controllers ,Research Article ,Adult ,Recent Thymic Emigrant ,T cells ,Immune control ,NATURAL VIRAL SUPPRESSORS ,MECHANISMS ,03 medical and health sciences ,Immune system ,Class modeling ,HIV-INFECTION ,T-cell homeostatic parameters ,VIH (Virus) ,Humans ,business.industry ,HIV (Viruses) ,lcsh:R ,MEMORY STEM-CELLS ,030104 developmental biology ,ATHEROSCLEROSIS ,Case-Control Studies ,Immunology ,business ,CD8 ,CD4 T cell loss ,Mathematics - Abstract
Despite long-lasting HIV replication control, a significant proportion of elite controller (EC) patients may experience CD4 T-cell loss. Discovering perturbations in immunological parameters could help our understanding of the mechanisms that may be operating in those patients experiencing loss of immunological control. Methods A case–control study was performed to evaluate if alterations in different T-cell homeostatic parameters can predict CD4 T-cell loss in ECs by comparing data from EC patients showing significant CD4 decline (cases) and EC patients showing stable CD4 counts (controls). The partial least-squares–class modeling (PLS-CM) statistical methodology was employed to discriminate between the two groups of patients, and as a predictive model. Results Herein, we show that among T-cell homeostatic alterations, lower levels of naïve and recent thymic emigrant subsets of CD8 cells and higher levels of effector and senescent subsets of CD8 cells as well as higher levels of exhaustion of CD4 cells, measured prior to CD4 T-cell loss, predict the loss of immunological control. Conclusions These data indicate that the parameters of T-cell homeostasis may identify those EC patients with a higher proclivity to CD4 T-cell loss. Our results may open new avenues for understanding the mechanisms underlying immunological progression despite HIV replication control, and eventually, for finding a functional cure through immune-based clinical trials., projects RD12/0017/0031, RD16/0025/ 0013, and SAF2015-66193-R as part of the Health Research and Development Strategy, State Plan for Scientific and Technical Research and Innovation (2008– 2011 and 2013–2016) and cofinanced by the Institute of Health Carlos III (ISCIII), Sub-Directorate General for Research Assessment and Promotion and European Regional Development Fund. NR is a Miguel Servet investigator from the ISCIII (CP14/00198), Madrid, Spain. C Restrepo was funded by project RD12/0017/ 0031 and is currently funded by project RD16/0025/0013. M García is a predoctoral student co-funded by grant CP14/00198 and an Intramural Research Scholarship from Instituto de Investigación Sanitaria-Fundación Jiménez Díaz (IIS-FJD).
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- 2018
12. Extent of third-order linkage disequilibrium in a composite line of Iberian pigs
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Silió, Luis [0000-0001-9369-7211], Gómez Raya, Luis, Silió, Luis, Rauw , Wendy Mercedes, Gracia-Cortés, L. A., Rodríguez, Carmen, Silió, Luis [0000-0001-9369-7211], Gómez Raya, Luis, Silió, Luis, Rauw , Wendy Mercedes, Gracia-Cortés, L. A., and Rodríguez, Carmen
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[Background], Previous studies on linkage disequilibrium have investigated second order linkage disequilibrium in animal and plant populations. The objective of this paper was to investigate the genome-wide levels of third order linkage disequilibrium in a composite line founded by admixture of four Iberian pig strains. A model for the generation of third order linkage disequilibrium by population admixture is proposed. A computer Expectation-Maximization algorithm is developed and applied to the estimation of third order linkage disequilibrium at inter- and intra-chromosomal level using 26,347 SNPs typed in 306 sows. The relationship of third order linkage disequilibrium with physical distance was investigated over 35 million triplets in SSC12. Basic and normalized estimates of inter and intra-chromosomal third order linkage disequilibrium are reported. [Results], Genome-wide analyses revealed that third order linkage disequilibrium is rather common among linked loci in this Iberian pig line. It is shown that population admixture of multiple populations may explain the observed levels of third order linkage disequilibrium although it could be generated by genetic drift. Third order linkage disequilibrium decreases rapidly up to 4 Mb and then declines slowly. The short distances between consecutive markers explain the maintenance of the observed third order linkage disequilibria levels when using a model incorporating the break-up of disequilibrium by recombination. Genome-wide testing also revealed that only 3.6% of the normalized estimates were different from 1, − 1, 0, or from a not well-defined situation in which there is only one possible value for the third order linkage disequilibrium parameter, given allele frequencies and pairwise linkage disequilibria parameters. [Conclusions], Third order linkage disequilibrium is common among linked markers in the analyzed pig line and may have been generated by population admixture of multiple populations or by genetic
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- 2018
13. Genomic inbreeding coefficients based on the distribution of the length of runs of homozygosity in a closed line of Iberian pigs
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Gómez Raya, Luis, Rodríguez, Carmen, Barragán, Carmen, Silió, Luis, Gómez Raya, Luis, Rodríguez, Carmen, Barragán, Carmen, and Silió, Luis
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Background The increasing availability of DNA markers provides new metrics of inbreeding based on single nucleotide polymorphisms (SNPs), i.e. molecular inbreeding or the proportion of runs of homozygosity (ROH), as alternatives to traditional pedigree-based inbreeding coefficients. However, none of these metrics incorporate the length of ROH as an indicator of recent inbreeding. Novel inbreeding coefficients that incorporate length of ROH as a random variable with an associated density are investigated. Methods New inbreeding metrics based on the distribution of the length of ROH are proposed (1) the Kolmolgorov-Smirnov test, (2) a function of the quantiles of the cumulative distribution function of an individual versus the population, and (3) fitting of an exponential distribution to ROH lengths (mean, variance, and the probability of drawing at random a ROH larger than a given threshold). The new inbreeding and pedigree-based metrics were compared using 217 sows of an Iberian line that belong to three groups C1 (conservation), C2 (conservation derived from C1), and S (selected and derived from C1), with complete pedigrees and genotyped for 35,023 SNPs. Results Correlations between pedigree-based and the new genomic inbreeding coefficients ranged from 0.22 to 0.72 but most ranged from 0.60 to 0.70. The correlation between quantile chromosomal inbreeding coefficients (using molecular information of just one chromosome at the time) and chromosomal length was 0.84 (SE = 0.14), supporting the hypothesis that these coefficients incorporate information on ROH length as an indication of recent inbreeding. Kolmogorov-Smirnov and exponential chromosomal inbreeding coefficients were also correlated with chromosomal length (0.57). Chromosome 1 had the largest quantile ROH inbreeding coefficient (largest ROH sizes), whereas chromosome 10 had the lowest (shortest ROH sizes). Selection for lean growth increased ROH-based inbreeding coefficients for group S when compared to unse
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- 2015
14. Longissimus dorsi transcriptome analysis of purebred and crossbred Iberian pigs differing in muscle characteristics
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Isabel, Beatriz [0000-0001-6192-6411], Silió, Luis [0000-0001-9369-7211], Ayuso, Miriam [0000-0001-6045-394X], Fernández, Ana Isabel [0000-0002-1509-5191], Núñez, Yolanda [0000-0001-5988-7628], Óvilo Martín, Cristina, Benítez Yáñez, Rita María, Fernández, Almudena, Núñez, Yolanda, Ayuso, Miriam, Fernández, Ana Isabel, Rodríguez, Carmen, Isabel, Beatriz, Rey, Ana I., López-Bote, C., Silió, Luis, Isabel, Beatriz [0000-0001-6192-6411], Silió, Luis [0000-0001-9369-7211], Ayuso, Miriam [0000-0001-6045-394X], Fernández, Ana Isabel [0000-0002-1509-5191], Núñez, Yolanda [0000-0001-5988-7628], Óvilo Martín, Cristina, Benítez Yáñez, Rita María, Fernández, Almudena, Núñez, Yolanda, Ayuso, Miriam, Fernández, Ana Isabel, Rodríguez, Carmen, Isabel, Beatriz, Rey, Ana I., López-Bote, C., and Silió, Luis
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Background The two main genetic types in Iberian pig production show important phenotypic differences in growth, fattening and tissue composition since early developmental stages. The objective of this work was the evaluation of muscle transcriptome profile in piglets of both genetic types, in order to identify genes, pathways and regulatory factors responsible for their phenotypic differences. Contemporary families coming from pure Iberian pigs (IB) or from crossing with Duroc boars (DU×IB) were generated. Piglets (14 from each genetic type) were slaughtered at weaning (28 days) and longissimus dorsi was sampled for composition and gene expression studies. RNA was obtained and hybridized to Affymetrix Porcine Genechip expression arrays.Results Loin muscle chemical composition showed significant differences between genetic types in intramuscular fat content (6.1% vs. 4.3% in IB and DUxIB animals, respectively, P = 0.009) and in saturated (P = 0.019) and monounsaturated fatty acid proportions (P = 0.044). The statistical analysis of gene expression data allowed the identification of 256 differentially expressed (DE) genes between genetic types (FDR < 0.10), 102 upregulated in IB and 154 upregulated in DU×IB. Transcript differences were validated for a subset of DE genes by qPCR. We observed alteration in biological functions related to extracellular matrix function and organization, cellular adhesion, muscle growth, lipid metabolism and proteolysis. Candidate genes with known effects on muscle growth were found among the DE genes upregulated in DU×IB. Genes related to lipid metabolism and proteolysis were found among those upregulated in IB. Regulatory factors (RF) potentially involved in the expression differences were identified by calculating the regulatory impact factors. Twenty-nine RF were found, some of them with known relationship with tissue development (MSTN, SIX4, IRX3), adipogenesis (CEBPD, PPARGC1B), or extracellular matrix processes (MAX, MXI1). Correla
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- 2014
15. Aging and amyloid β oligomers enhance TLR4 expression, LPS-induced Ca2+ responses, and neuron cell death in cultured rat hippocampal neurons.
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Calvo-Rodríguez, María, de la Fuente, Carmen, García-Durillo, Mónica, García-Rodríguez, Carmen, Villalobos, Carlos, and Núñez, Lucía
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AMYLOID ,TOLL-like receptors ,MEMBRANE proteins ,PATTERN perception receptors ,NEUROTOXIC agents ,CALCIUM metabolism ,AGING ,ANIMAL populations ,ANIMALS ,ASPARTIC acid ,CALCIUM-binding proteins ,CELL culture ,CELL death ,CELL receptors ,HIPPOCAMPUS (Brain) ,HYDROCARBONS ,NEURONS ,PEPTIDES ,RATS ,LIPOPOLYSACCHARIDES ,EXCITATORY amino acid agonists ,EXCITATORY amino acid antagonists - Abstract
Background: Toll-like receptors (TLRs) are transmembrane pattern-recognition receptors of the innate immune system recognizing diverse pathogen-derived and tissue damage-related ligands. It has been suggested that TLR signaling contributes to the pathogenesis of age-related, neurodegenerative diseases, including Alzheimer's disease (AD). AD is associated to oligomers of the amyloid β peptide (Aβo) that cause intracellular Ca2+ dishomeostasis and neuron cell death in rat hippocampal neurons. Here we assessed the interplay between inflammation and Aβo in long-term cultures of rat hippocampal neurons, an in vitro model of neuron aging and/or senescence.Methods: Ca2+ imaging and immunofluorescence against annexin V and TLR4 were applied in short- and long-term cultures of rat hippocampal neurons to test the effects of TLR4-agonist LPS and Aβo on cytosolic [Ca2+] and on apoptosis as well as on expression of TLR4.Results: LPS increases cytosolic [Ca2+] and promotes apoptosis in rat hippocampal neurons in long-term culture considered aged and/or senescent neurons, but not in short-term cultured neurons considered young neurons. TLR4 antagonist CAY10614 prevents both effects. TLR4 expression in rat hippocampal neurons is significantly larger in aged hippocampal cultures. Treatment of aged hippocampal cultures with Aβo increases TLR4 expression and enhances LPS-induced Ca2+ responses and neuron cell death.Conclusions: Aging and amyloid β oligomers, the neurotoxin involved in Alzheimer's disease, enhance TLR4 expression as well as LPS-induced Ca2+ responses and neuron cell death in rat hippocampal neurons aged in vitro. [ABSTRACT FROM AUTHOR]- Published
- 2017
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16. Non-additive effects of RBP4, ESR1 and IGF2 polymorphisms on litter size at different parities in a Chinese-European porcine line
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Silió, Luis [0000-0001-9369-7211], Fernández, Ana Isabel [0000-0002-1509-5191], Muñoz Muñoz, María, Fernández, Ana Isabel, Óvilo Martín, Cristina, Muñoz, G., Rodríguez, Carmen, Fernández, Almudena, Alves, Estefania, Silió, Luis, Silió, Luis [0000-0001-9369-7211], Fernández, Ana Isabel [0000-0002-1509-5191], Muñoz Muñoz, María, Fernández, Ana Isabel, Óvilo Martín, Cristina, Muñoz, G., Rodríguez, Carmen, Fernández, Almudena, Alves, Estefania, and Silió, Luis
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Background The aim of this work was to study the effects on litter size of variants of the porcine genes RBP4, ESR1 and IGF2, currently used in genetic tests for different purposes. Moreover, we investigated a possible effect of the interaction between RBP4-MspI and ESR1-PvuII polymorphisms. The IGF2-intron3-G3072A polymorphism is actually used to select lean growth, but other possible effects of this polymorphism on reproductive traits need to be evaluated. Methods. Detection of polymorphisms in the genomic and cDNA sequences of RBP4 gene was carried out. RBP4-MspI and IGF2-intron3-G3072A were genotyped in a hyperprolific Chinese-European line (Tai-Zumu) and three new RBP4 polymorphisms were genotyped in different pig breeds. A bivariate animal model was implemented in association analyses considering the number of piglets born alive at early (NBA 12) and later parities (NBA 3+) as different traits. A joint analysis of RBP4-MspI and ESR1-PvuII was performed to test their possible interaction. In the IGF2 analysis, paternal or maternal imprinting effects were also considered. Results Four different RBP4 haplotypes were detected (TGAC, GGAG, GAAG and GATG) in different pig breeds and wild boars. A significant interaction effect between RBP4-MspI and ESR1-PvuII polymorphisms of 0.61 0.29 piglets was detected on NBA 3+. The IGF2 analysis revealed a significant increase on NBA 3+ of 0.74 0.37 piglets for the paternally inherited allele A. Conclusions All the analyzed pig and wild boar populations shared one of the four detected RBP4 haplotypes. This suggests an ancestral origin of the quoted haplotype. The joint use of RBP4-MspI and ESR1-PvuII polymorphisms could be implemented to select for higher prolificacy in the Tai-Zumu line. In this population, the paternal allele IGF2-intron3-3072A increased litter size from the third parity. The non-additive effects on litter size reported here should be tested before implementation in other pig breeding schemes. © 2010 Mũoz et
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- 2010
17. A bi-dimensional genome scan for prolificacy traits in pigs shows the existence of multiple epistatic QTL
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Noguera, José L. [0000-0002-0492-1734], Noguera, José L., Rodríguez, Carmen, Varona, Luis, Tomàs, Anna, Muñoz, G., Ramírez, Óscar, Barragán, Carmen, Arqué, Meritxell, Bidanel, J. P., Amills, Marcel, Óvilo Martín, Cristina, Sánchez, Armand, Noguera, José L. [0000-0002-0492-1734], Noguera, José L., Rodríguez, Carmen, Varona, Luis, Tomàs, Anna, Muñoz, G., Ramírez, Óscar, Barragán, Carmen, Arqué, Meritxell, Bidanel, J. P., Amills, Marcel, Óvilo Martín, Cristina, and Sánchez, Armand
- Abstract
Background Prolificacy is the most important trait influencing the reproductive efficiency of pig production systems. The low heritability and sex-limited expression of prolificacy have hindered to some extent the improvement of this trait through artificial selection. Moreover, the relative contributions of additive, dominant and epistatic QTL to the genetic variance of pig prolificacy remain to be defined. In this work, we have undertaken this issue by performing one-dimensional and bi-dimensional genome scans for number of piglets born alive (NBA) and total number of piglets born (TNB) in a three generation Iberian by Meishan F2intercross.Results The one-dimensional genome scan for NBA and TNB revealed the existence of two genome-wide highly significant QTL located on SSC13 (P < 0.001) and SSC17 (P < 0.01) with effects on both traits. This relative paucity of significant results contrasted very strongly with the wide array of highly significant epistatic QTL that emerged in the bi-dimensional genome-wide scan analysis. As much as 18 epistatic QTL were found for NBA (four at P < 0.01 and five at P < 0.05) and TNB (three at P < 0.01 and six at P < 0.05), respectively. These epistatic QTL were distributed in multiple genomic regions, which covered 13 of the 18 pig autosomes, and they had small individual effects that ranged between 3 to 4% of the phenotypic variance. Different patterns of interactions (a × a, a × d, d × a and d × d) were found amongst the epistatic QTL pairs identified in the current work.Conclusions The complex inheritance of prolificacy traits in pigs has been evidenced by identifying multiple additive (SSC13 and SSC17), dominant and epistatic QTL in an Iberian × Meishan F2intercross. Our results demonstrate that a significant fraction of the phenotypic variance of swine prolificacy traits can be attributed to first-order gene-by-gene interactions emphasizing that the phenotypic effects of alleles might be strongly modulated by the genetic backgro
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- 2009
18. Association with litter size of new polymorphisms on ESR1 and ESR2 genes in a Chinese-European pig line
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Estellé, Jordi [0000-0002-6241-1732], Silió, Luis [0000-0001-9369-7211], Muñoz, G., Óvilo Martín, Cristina, Estellé, Jordi, Silió, Luis, Fernández, Almudena, Rodríguez, Carmen, Estellé, Jordi [0000-0002-6241-1732], Silió, Luis [0000-0001-9369-7211], Muñoz, G., Óvilo Martín, Cristina, Estellé, Jordi, Silió, Luis, Fernández, Almudena, and Rodríguez, Carmen
- Abstract
The objective of this study was to search for polymorphisms in the coding region of the estrogen receptors 1 and 2 (ESR1 and ESR2) and to analyze the effects of these variants and the well known intronic ESR1 PvuII polymorphism on litter size in a Chinese-European pig line. We identified five silent single nucleotide polymorphisms (SNP) in the ESR1 cDNA c.669T > C (exon 3), c.1227C > T (exon 5), c.1452C > T (exon 7), c.1665T > C and c.1755A > G (exon 8). One pair of these SNP (c.1665T > C and c.1755A > G) co-segregated in the analyzed line, and the SNP c.669T > C showed the same segregation pattern as the PvuII polymorphism. These polymorphisms were tested in this study, although the c.1452C > T SNP within exon 7 was not analyzed due to its low informativeness. In the ESR2 cDNA, one missense SNP was found within exon 5, which caused an amino acid substitution in the coded protein "c.949G > A (p.Val317Met)" and was tested on sow litter size. Information on 1622 litter records from 408 genotyped sows was analyzed to determine whether these SNP influenced the total number of piglets born (TNB) or the number of born alive (NBA). The polymorphisms ESR1 [PvuII; c.669T > C], ESR1 [c.1665T > C; c.1755A > G] and ESR2 c.949G > A showed no statistically significant association with litter size. However, the ESR1 c.1227T allele was significantly associated with TNB. The additive substitution effect was estimated to be 0.40 piglets born per litter (P < 0.03), and no dominance effects were observed. This SNP could be useful in assisted selection for litter size in some pig lines, as a new genetic marker in linkage disequilibrium with the causative mutation. © INRA, EDP Sciences, 2007.
- Published
- 2007
19. Test for positional candidate genes for body composition on pig chromosome 6
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Clop, Alex [0000-0001-9238-2728], Pérez-Enciso, Miguel [0000-0003-3524-995X], Óvilo Martín, Cristina, Oliver, Angels, Noguera, José L., Clop, Alex, Barragán, Carmen, Varona, Luis, Rodríguez, Carmen, Toro, M. A., Sánchez, Armand, Pérez-Enciso, Miguel, Silió, Luis, Clop, Alex [0000-0001-9238-2728], Pérez-Enciso, Miguel [0000-0003-3524-995X], Óvilo Martín, Cristina, Oliver, Angels, Noguera, José L., Clop, Alex, Barragán, Carmen, Varona, Luis, Rodríguez, Carmen, Toro, M. A., Sánchez, Armand, Pérez-Enciso, Miguel, and Silió, Luis
- Abstract
One QTL affecting backfat thickness (BF), intramuscular fat content (IMF) and eye muscle area (MA) was previously localized on porcine chromosome 6 in an F2 cross between Iberian and Landrace pigs. This work was done to study the effect of two positional candidate genes on these traits H-FABP and LEPR genes. The QTL mapping analysis was repeated with a regression method using genotypes for seven microsatellites and two PCR-RFLPs in the HFABP and LEPR genes. H-FABP and LEPR genes were located at 85.4 and 107 cM respectively, by linkage analysis. The effects of the candidate gene polymorphisms were analyzed in two ways. When an animal model was fitted, both genes showed significant effects on fatness traits, the H-FABP polymorphism showed significant effects on IMF and MA, and the LEPR polymorphism on BF and IMF. But when the candidate gene effect was included in a QTL regression analysis these associations were not observed, suggesting that they must not be the causal mutations responsible for the effects found. Differences in the results of both analyses showed the inadequacy of the animal model approach for the evaluation of positional candidate genes in populations with linkage disequilibrium, when the probabilities of the parental origin of the QTL alleles are not included in the model.
- Published
- 2002
20. Genomic inbreeding coefficients based on the distribution of the length of runs of homozygosity in a closed line of Iberian pigs.
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Gomez-Raya, Luis, Rodríguez, Carmen, Barragán, Carmen, and Silió, Luis
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INBREEDING ,HOMOZYGOSITY ,ANIMAL genetics ,GENETIC markers ,SINGLE nucleotide polymorphisms ,RANDOM variables - Abstract
Background: The increasing availability of DNA markers provides new metrics of inbreeding based on single nucleotide polymorphisms (SNPs), i.e. molecular inbreeding or the proportion of runs of homozygosity (ROH), as alternatives to traditional pedigree-based inbreeding coefficients. However, none of these metrics incorporate the length of ROH as an indicator of recent inbreeding. Novel inbreeding coefficients that incorporate length of ROH as a random variable with an associated density are investigated. Methods: New inbreeding metrics based on the distribution of the length of ROH are proposed: (1) the Kolmolgorov– Smirnov test, (2) a function of the quantiles of the cumulative distribution function of an individual versus the population, and (3) fitting of an exponential distribution to ROH lengths (mean, variance, and the probability of drawing at random a ROH larger than a given threshold). The new inbreeding and pedigree-based metrics were compared using 217 sows of an Iberian line that belong to three groups: C1 (conservation), C2 (conservation derived from C1), and S (selected and derived from C1), with complete pedigrees and genotyped for 35,023 SNPs. Results: Correlations between pedigree-based and the new genomic inbreeding coefficients ranged from 0.22 to 0.72 but most ranged from 0.60 to 0.70. The correlation between quantile chromosomal inbreeding coefficients (using molecular information of just one chromosome at the time) and chromosomal length was 0.84 (SE = 0.14), supporting the hypothesis that these coefficients incorporate information on ROH length as an indication of recent inbreeding. Kolmogorov–Smirnov and exponential chromosomal inbreeding coefficients were also correlated with chromosomal length (0.57). Chromosome 1 had the largest quantile ROH inbreeding coefficient (largest ROH sizes), whereas chromosome 10 had the lowest (shortest ROH sizes). Selection for lean growth increased ROH-based inbreeding coefficients for group S when compared to unselected groups C1 and C2. At the chromosomal level, this comparison showed that the level of autozygosity and the length of ROH for most of the autosomes increased in the selection line. Conclusions: Quantile and exponential probability inbreeding coefficients using ROH length as a random variable provide additional information about recent inbreeding compared to existing inbreeding coefficients such as molecular, pedigree-based or total ROH content inbreeding coefficients. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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21. Optimal use of genetic markers in conservation programmes
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Toro, M. A. [0000-0001-7460-2483], Silió, Luis [0000-0001-9369-7211], Fernández, Jesús [0000-0001-8269-1893], Toro, M. A., Silió, Luis, Rodrigáñez, J., Rodríguez, Carmen, Fernández, Jesús, Toro, M. A. [0000-0001-7460-2483], Silió, Luis [0000-0001-9369-7211], Fernández, Jesús [0000-0001-8269-1893], Toro, M. A., Silió, Luis, Rodrigáñez, J., Rodríguez, Carmen, and Fernández, Jesús
- Abstract
Monte Carlo simulations were carried out in order to study the benefits of using molecular markers to minimize the homozygosity by descent in a conservation scheme of the Iberian pig. A selection criterion is introduced the overall expected heterozygosity of the group of selected individuals. The method to implement this criterion depends on the type of information available. In the absence of molecular information breeding animals are chosen that minimize the average group coancestry calculated from pedigree. If complete molecular information is known the average group coancestry is calculated either from markers alone or by combining pedigree and genotypes with the markers. When a limited number of markers and alleles per marker are considered, the optimal criterion is the average group coancestry based on markers. Other alternatives, such as optimal within-family selection and frequency-dependent selection, are also analysed.
- Published
- 1999
22. No transmission of hepatitis E virus in pigs fed diets containing commercial spray-dried porcine plasma: a retrospective study of samples from several swine trials.
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Pujols, Joan, Rodríguez, Carmen, Navarro, Nuria, Pina-Pedrero, Sonia, Campbell, Joy M., Crenshaw, Joe, and Polo, Javier
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- *
SWINE nutrition , *HEPATITIS E virus , *VIRAL antibodies , *BLOOD plasma , *GENOMES , *BLOOD serum analysis , *RNA virus infections , *SEROCONVERSION - Abstract
Background Hepatitis E virus (HEV) has been reported in the human population and pigs are a recognized reservoir for HEV and a possible source of HEV transmission to humans. Spray-dried porcine plasma (SDPP) is an ingredient commonly used in feed for pigs around the world. Even though processing conditions used to produce SDPP should be adequate to inactivate HEV, it was of interest to analyze commercial SDPP samples for presence of genome and antibodies (AB) against HEV and to retrospectively analyze serum samples collected from pigs used in past experiments that had been fed diets containing either 0% or 8% SDPP to detect potential transmission of HEV as determined by seroconversion. Results Eighty-five commercial SDPP samples were analyzed by ELISA and 100% of them contained AB against HEV, while 22.4% (11 of 49 samples analyzed) were positive for HEV RNA. Frozen sera samples (n = 140) collected from 70 pigs used in past experiments that had been fed diets containing either 0% or 8% commercial SDPP was analyzed by ELISA for AB against HEV. Age of pigs at sera sampling ranged from 3 to 15 weeks and feeding duration of diets ranged from approximately 4 to 9 weeks. One lot of SDPP used in one experiment was analyzed and confirmed to contain HEV RNA. Regardless of the diet fed, some sera samples collected at the beginning of an experiment contained AB titer against HEV. These sera samples were collected from weaned pigs prior to feeding of the experimental diets and the HEV titer was probably from maternal origin. However, by the end of the experiments, HEV titer was not detected or had declined by more than 50% of the initial titer concentration. Conclusions To our knowledge, this is the first study reporting presence of HEV AB titer and RNA in SDPP. Retrospective analysis of serum collected from pigs fed diets with SDPP revealed no indication of seroconversion to HEV. The results indicate that feeding SDPP in diets for pigs does not represent a risk of transmitting HEV, even though HEV genome may be detected in SDPP. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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23. The use of molecular markers in conservation programmes of live animals
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Silió, Luis [0000-0001-9369-7211], Toro, M. A. [0000-0001-7460-2483], Toro, M. A., Silió, Luis, Rodrigáñez, J., Rodríguez, Carmen, Silió, Luis [0000-0001-9369-7211], Toro, M. A. [0000-0001-7460-2483], Toro, M. A., Silió, Luis, Rodrigáñez, J., and Rodríguez, Carmen
- Abstract
Monte Carlo simulation has been carried out to study the benefits of using molecular markers in a conservation programme to minimize the homozygosity by descent in the overall genome. Selection of the breeding individuals was either at random or based on two alternative criteria overall heterozygosity of the markers or frequency-dependent selection. Even molecular information was available for all the 1 900 simulated loci, a conventional tactic such as restriction in the variance of the family size is the most important strategy for maintaining genetic variability. In this context a) frequency-dependent selection seems to be a more efficient criterion than selection for heterozygosity; and b) the value of marker information increases as the selection intensity increases. Results from more realistic cases (1, 2, 3, 4, 6 or 10 markers per chromosome and 2, 4, 6 or 10 alleles per marker) confirm the above conclusions. This is an expensive strategy with respect to the number of candidates and the number of markers required in order to obtain substantial benefits, the usefulness of a marker being related to the number of alleles. The minimum coancestry mating system was also compared with random mating and it is concluded that it is advantageous at least for many generations.
- Published
- 1998
24. Longissimus dorsi transcriptome analysis of purebred and crossbred Iberian pigs differing in muscle characteristics.
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Óvilo, Cristina, Benítez, Rita, Fernández, Almudena, Núñez, Yolanda, Ayuso, Miriam, Fernández, Ana Isabel, Rodríguez, Carmen, Isabel, Beatriz, Rey, Ana Isabel, López-Bote, Clemente, and Silió, Luis
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SWINE genetics ,PHENOTYPES ,SWINE breeding ,GENE expression ,PROTEOLYSIS ,LIPID metabolism - Abstract
Background The two main genetic types in Iberian pig production show important phenotypic differences in growth, fattening and tissue composition since early developmental stages. The objective of this work was the evaluation of muscle transcriptome profile in piglets of both genetic types, in order to identify genes, pathways and regulatory factors responsible for their phenotypic differences. Contemporary families coming from pure Iberian pigs (IB) or from crossing with Duroc boars (DUxIB) were generated. Piglets (14 from each genetic type) were slaughtered at weaning (28 days) and longissimus dorsi was sampled for composition and gene expression studies. RNA was obtained and hybridized to Affymetrix Porcine Genechip expression arrays. Results Loin muscle chemical composition showed significant differences between genetic types in intramuscular fat content (6.1% vs. 4.3% in IB and DUxIB animals, respectively, P = 0.009) and in saturated (P = 0.019) and monounsaturated fatty acid proportions (P = 0.044). The statistical analysis of gene expression data allowed the identification of 256 differentially expressed (DE) genes between genetic types (FDR < 0.10), 102 upregulated in IB and 154 upregulated in DUxIB. Transcript differences were validated for a subset of DE genes by qPCR. We observed alteration in biological functions related to extracellular matrix function and organization, cellular adhesion, muscle growth, lipid metabolism and proteolysis. Candidate genes with known effects on muscle growth were found among the DE genes upregulated in DUxIB. Genes related to lipid metabolism and proteolysis were found among those upregulated in IB. Regulatory factors (RF) potentially involved in the expression differences were identified by calculating the regulatory impact factors. Twenty-nine RF were found, some of them with known relationship with tissue development (MSTN, SIX4, IRX3), adipogenesis (CEBPD, PPARGC1B), or extracellular matrix processes (MAX, MXI1). Correlation among the expression of these RF and DE genes show relevant differences between genetic types. Conclusion These results provide valuable information about genetic mechanisms determining the phenotypic differences on growth and meat quality between the genetic types studied, mainly related to the development and function of the extracellular matrix and also to some metabolic processes as proteolysis and lipid metabolism. Transcription factors and regulatory mechanisms are proposed for these altered biological functions. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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25. A bi-dimensional genome scan for prolificacy traits in pigs shows the existence of multiple epistatic QTL.
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Noguera, José L., Rodríguez, Carmen, Varona, Luis, Tomàs, Anna, Muñoz, Gloria, Ramírez, Oscar, Barragán, Carmen, Arqué, Meritxell, Bidanel, Jean P., Amills, Marcel, Ovilo, Cristina, and Sánchez, Armand
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- *
GENOMES , *SWINE , *EPISTASIS (Genetics) , *GENE expression , *GENETIC regulation - Abstract
Background: Prolificacy is the most important trait influencing the reproductive efficiency of pig production systems. The low heritability and sex-limited expression of prolificacy have hindered to some extent the improvement of this trait through artificial selection. Moreover, the relative contributions of additive, dominant and epistatic QTL to the genetic variance of pig prolificacy remain to be defined. In this work, we have undertaken this issue by performing one-dimensional and bi-dimensional genome scans for number of piglets born alive (NBA) and total number of piglets born (TNB) in a three generation Iberian by Meishan F2 intercross. Results: The one-dimensional genome scan for NBA and TNB revealed the existence of two genome-wide highly significant QTL located on SSC13 (P < 0.001) and SSC17 (P < 0.01) with effects on both traits. This relative paucity of significant results contrasted very strongly with the wide array of highly significant epistatic QTL that emerged in the bi-dimensional genome-wide scan analysis. As much as 18 epistatic QTL were found for NBA (four at P < 0.01 and five at P < 0.05) and TNB (three at P < 0.01 and six at P < 0.05), respectively. These epistatic QTL were distributed in multiple genomic regions, which covered 13 of the 18 pig autosomes, and they had small individual effects that ranged between 3 to 4% of the phenotypic variance. Different patterns of interactions (a × a, a × d, d × a and d × d) were found amongst the epistatic QTL pairs identified in the current work. Conclusions: The complex inheritance of prolificacy traits in pigs has been evidenced by identifying multiple additive (SSC13 and SSC17), dominant and epistatic QTL in an Iberian × Meishan F2 intercross. Our results demonstrate that a significant fraction of the phenotypic variance of swine prolificacy traits can be attributed to first-order gene-by-gene interactions emphasizing that the phenotypic effects of alleles might be strongly modulated by the genetic background where they segregate. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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26. Autoantibodies against the chromosomal passenger protein INCENP found in a patient with Graham Little-Piccardi-Lassueur syndrome.
- Author
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Rodríguez-Bayona, Beatriz, Ruchaud, Sandrine, Rodríguez, Carmen, Linares, Mario, Astola, Antonio, Ortiz, Manuela, Earnshaw, William C., and Valdivia, Manuel M.
- Subjects
BALDNESS ,BALDNESS treatment ,AUTOIMMUNITY ,DISEASES ,PATIENTS - Abstract
Background: Graham Little - Piccardi - Lassueur (GLPL) syndrome is a rare dermatosis characterized by scarring alopecia, loss of pubic and axillary hair, and progressive development of variously located follicular papules. We report a first case ever of an autoimmune response in a patient suffering from GLPL syndrome. Methods: Immunofluorescence and immunoblot analysis were used in a variety of cell culturesincluding human, monkey, hamster, mouse and bovine cells to analyze the presence of autoantibodies in a GLPL patient. Results: The autoimmune serum showed a pattern of centromere and spindle microtubule staining resembling that of the chromosomal passenger protein complex. By using a complex of proteins expressed in baculovirus, immunoblot analysis demonstrated that the INCENP protein is a major autoantigen in this patient with GLPL syndrome. Conclusion: An autoimmune response in GLPL syndrome is reported against the INCENP centromere protein. The occasional development of autoimmunity in GLPL patients could serve as a test in continuing efforts to detect this disease and for a more directed therapy based on the autoantigen response. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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27. Prevalence and changing distribution of HTLV-1 and HTLV-2 infections in Spain.
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Treviño, Ana, Aguilera, Antonio, Caballero, Estrella, Benito, Rafael, Parra, Patricia, Eiros, Jose M., Hernandez, Araceli, Calderón, Enrique, Rodríguez, Manuel, Torres, Alvaro, García, Juan, Ramos, Jose Manuel, Roc, Lourdes, Marcaida, Goitzane, Rodríguez, Carmen, Trigo, Matilde, Gomez, Cesar, de Lejarazu, Raul Ortíz, de Mendoza, Carmen, and Soriano, Vincent
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HTLV diseases ,DISEASE prevalence - Abstract
An abstract of the article "Prevalence and changing distribution of HTLV-1 and HTLV-2 infections in Spain," by Ana Treviño and colleagues is presented.
- Published
- 2011
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28. Seroprevalence of HTLV infection in Spain among immigrant pregnant women.
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Treviño, Ana, Benito, Rafael, Caballero, Estrella, Ramos, Jose Manuel, Roc, Lourdes, Eiros, Jose María, Aguilera, Antonio, García, Juan, Cifuentes, Carmen, Marcaida, Goitzane, Rodríguez, Carmen, Trigo, Matilde, Arroyo, Luis, de Mendoza, Carmen, and Soriano, Vincent
- Subjects
HTLV diseases ,PREGNANT women - Abstract
An abstract of the article "Seroprevalence of HTLV infection in Spain among immigrant pregnant women," by Rafael Benito, Estrella Caballero and colleagues, is presented.
- Published
- 2011
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29. Aging and amyloid β oligomers enhance TLR4 expression, LPS-induced Ca 2+ responses, and neuron cell death in cultured rat hippocampal neurons.
- Author
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Calvo-Rodríguez M, de la Fuente C, García-Durillo M, García-Rodríguez C, Villalobos C, and Núñez L
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- Aging drug effects, Animals, Animals, Newborn, Annexin A5 metabolism, Cells, Cultured, Cytosol drug effects, Cytosol metabolism, Dizocilpine Maleate pharmacology, Excitatory Amino Acid Agonists pharmacology, Excitatory Amino Acid Antagonists pharmacology, Lipopolysaccharides pharmacology, N-Methylaspartate pharmacology, Rats, Rats, Wistar, Toll-Like Receptor 4 antagonists & inhibitors, Toll-Like Receptor 4 genetics, Aging physiology, Amyloid beta-Peptides pharmacology, Calcium metabolism, Cell Death drug effects, Hippocampus cytology, Neurons drug effects, Peptide Fragments pharmacology, Toll-Like Receptor 4 metabolism
- Abstract
Background: Toll-like receptors (TLRs) are transmembrane pattern-recognition receptors of the innate immune system recognizing diverse pathogen-derived and tissue damage-related ligands. It has been suggested that TLR signaling contributes to the pathogenesis of age-related, neurodegenerative diseases, including Alzheimer's disease (AD). AD is associated to oligomers of the amyloid β peptide (Aβo) that cause intracellular Ca
2+ dishomeostasis and neuron cell death in rat hippocampal neurons. Here we assessed the interplay between inflammation and Aβo in long-term cultures of rat hippocampal neurons, an in vitro model of neuron aging and/or senescence., Methods: Ca2+ imaging and immunofluorescence against annexin V and TLR4 were applied in short- and long-term cultures of rat hippocampal neurons to test the effects of TLR4-agonist LPS and Aβo on cytosolic [Ca2+ ] and on apoptosis as well as on expression of TLR4., Results: LPS increases cytosolic [Ca2+ ] and promotes apoptosis in rat hippocampal neurons in long-term culture considered aged and/or senescent neurons, but not in short-term cultured neurons considered young neurons. TLR4 antagonist CAY10614 prevents both effects. TLR4 expression in rat hippocampal neurons is significantly larger in aged hippocampal cultures. Treatment of aged hippocampal cultures with Aβo increases TLR4 expression and enhances LPS-induced Ca2+ responses and neuron cell death., Conclusions: Aging and amyloid β oligomers, the neurotoxin involved in Alzheimer's disease, enhance TLR4 expression as well as LPS-induced Ca2+ responses and neuron cell death in rat hippocampal neurons aged in vitro.- Published
- 2017
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30. Influence of spray dried porcine plasma in starter diets associated with a conventional vaccination program on wean to finish performance.
- Author
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Pujols J, Segalés J, Polo J, Rodríguez C, Campbell J, and Crenshaw J
- Abstract
Background: Conventional vaccination programs using a single injection of a combined vaccine against porcine circovirus type 2 (PCV2) and Mycoplasma hyopneumoniae (MHYO) can promote a strong immune response that reduces feed intake for 24 to 48 h post injection. Often such vaccines are given around the time of weaning during a critical stress period in which feed intake is already compromised. Spray dried porcine plasma (SDPP) is a protein source used in starter diets that increases post-weaning feed intake of pigs. The objectives of this study were to determine the effects of a conventional vaccination program along with feeding SDPP in a starter diet on antibody development and wean to finish performance of pigs., Results: Pigs fed the starter diet with SDPP had improved body weight, average daily weight gain and average daily feed intake during the initial 14 d after weaning along with improved feed efficiency during the initial 7 d after weaning and these responses were independent of vaccination. Vaccination at 3 d after weaning had no significant effect on performance during the initial 14 d after weaning. Cumulative mortality was reduced for pigs fed the starter diet with SDPP, while vaccinated pigs had reduced mortality from d 48 to 145. Both vaccinated pigs and those fed the starter diet with SDPP had heavier carcass weight. One pig per pen was challenged with PCV2 at d 63. A higher percentage of vaccinated pigs were sero-positive for antibodies against PCV2 and MHYO at d 35, 63 and 78. Antibody values against PCV2 were higher for vaccinated pigs at d 35 and 63, but lower at d 146. Percentage of positive samples for PCV2 genome in serum was reduced for vaccinated pigs at d 117 and 146. Antibody values against MHYO were increased for vaccinated pigs at d 35, 63 and 78., Conclusions: Vaccination supported a long term antibody response against PCV2 and a moderate but weaker antibody response against MHYO for early finishing pigs challenged with PCV2. Using SDPP in the starter diet along with vaccination supported the best long-term beneficial effects on survival to market and carcass weight.
- Published
- 2016
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31. Clinical, virological and biochemical evidence supporting the association of HIV-1 reverse transcriptase polymorphism R284K and thymidine analogue resistance mutations M41L, L210W and T215Y in patients failing tenofovir/emtricitabine therapy.
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Betancor G, Garriga C, Puertas MC, Nevot M, Anta L, Blanco JL, Pérez-Elías MJ, de Mendoza C, Martínez MA, Martinez-Picado J, Menéndez-Arias L, Iribarren JA, Caballero E, Ribera E, Llibre JM, Clotet B, Jaén A, Dalmau D, Gatel JM, Peraire J, Vidal F, Vidal C, Riera M, Córdoba J, López Aldeguer J, Galindo MJ, Gutiérrez F, Álvarez M, García F, Pérez-Romero P, Viciana P, Leal M, Palomares JC, Pineda JA, Viciana I, Santos J, Rodríguez P, Gómez Sirvent JL, Gutiérrez C, Moreno S, Pérez-Olmeda M, Alcamí J, Rodríguez C, del Romero J, Cañizares A, Pedreira J, Miralles C, Ocampo A, Morano L, Aguilera A, Garrido C, Manuzza G, Poveda E, and Soriano V
- Subjects
- Adenine administration & dosage, Adenine pharmacology, Anti-HIV Agents administration & dosage, Anti-HIV Agents pharmacology, Deoxycytidine administration & dosage, Deoxycytidine pharmacology, Emtricitabine, HIV Infections drug therapy, HIV Reverse Transcriptase metabolism, HIV-1 drug effects, HIV-1 isolation & purification, Humans, Molecular Sequence Data, Organophosphonates pharmacology, Selection, Genetic, Sequence Analysis, DNA, Tenofovir, Treatment Failure, Adenine analogs & derivatives, Deoxycytidine analogs & derivatives, Drug Resistance, Viral, HIV Infections virology, HIV Reverse Transcriptase genetics, HIV-1 genetics, Mutation, Missense, Organophosphonates administration & dosage
- Abstract
Background: Thymidine analogue resistance mutations (TAMs) selected under treatment with nucleoside analogues generate two distinct genotypic profiles in the HIV-1 reverse transcriptase (RT): (i) TAM1: M41L, L210W and T215Y, and (ii) TAM2: D67N, K70R and K219E/Q, and sometimes T215F. Secondary mutations, including thumb subdomain polymorphisms (e.g. R284K) have been identified in association with TAMs. We have identified mutational clusters associated with virological failure during salvage therapy with tenofovir/emtricitabine-based regimens. In this context, we have studied the role of R284K as a secondary mutation associated with mutations of the TAM1 complex., Results: The cross-sectional study carried out with > 200 HIV-1 genotypes showed that virological failure to tenofovir/emtricitabine was strongly associated with the presence of M184V (P < 10-10) and TAMs (P < 10-3), while K65R was relatively uncommon in previously-treated patients failing antiretroviral therapy. Clusters of mutations were identified, and among them, the TAM1 complex showed the highest correlation coefficients. Covariation of TAM1 mutations and V118I, V179I, M184V and R284K was observed. Virological studies showed that the combination of R284K with TAM1 mutations confers a fitness advantage in the presence of zidovudine or tenofovir. Studies with recombinant HIV-1 RTs showed that when associated with TAM1 mutations, R284K had a minimal impact on zidovudine or tenofovir inhibition, and in their ability to excise the inhibitors from blocked DNA primers. However, the mutant RT M41L/L210W/T215Y/R284K showed an increased catalytic rate for nucleotide incorporation and a higher RNase H activity in comparison with WT and mutant M41L/L210W/T215Y RTs. These effects were consistent with its enhanced chain-terminated primer rescue on DNA/DNA template-primers, but not on RNA/DNA complexes, and can explain the higher fitness of HIV-1 having TAM1/R284K mutations., Conclusions: Our study shows the association of R284K and TAM1 mutations in individuals failing therapy with tenofovir/emtricitabine, and unveils a novel mechanism by which secondary mutations are selected in the context of drug-resistance mutations.
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- 2012
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32. Effect of depression on mortality and cardiovascular morbidity in type 2 diabetes mellitus after 3 years follow up. The DIADEMA study protocol.
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de Burgos-Lunar C, Gómez-Campelo P, Cárdenas-Valladolid J, Fuentes-Rodríguez CY, Granados-Menéndez MI, López-López F, and Salinero-Fort MA
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- Adolescent, Adult, Aged, Aged, 80 and over, Cardiovascular Diseases mortality, Cardiovascular Diseases psychology, Clinical Protocols, Comorbidity, Depression mortality, Depression psychology, Depressive Disorder mortality, Depressive Disorder psychology, Diabetes Mellitus, Type 2 mortality, Diabetes Mellitus, Type 2 psychology, Female, Follow-Up Studies, Humans, Incidence, Male, Middle Aged, Prevalence, Spain epidemiology, Cardiovascular Diseases epidemiology, Depression epidemiology, Depressive Disorder epidemiology, Diabetes Mellitus, Type 2 epidemiology
- Abstract
Background: Type 2 diabetes mellitus and depression are highly prevalent diseases that are associated with an increased risk of cardiovascular disease and mortality. There is evidence about a bidirectional association between depressive symptoms and type 2 diabetes mellitus. However, prognostic implications of the joint effects of these two diseases on cardiovascular morbidity and mortality are not well-known., Method/design: A three-year, observational, prospective, cohort study, carried out in Primary Health Care Centres in Madrid (Spain). The project aims to analyze the effect of depression on cardiovascular events, all-cause and cardiovascular mortality in patients with type 2 diabetes mellitus, and to estimate a clinical predictive model of depression in these patients.The number of patients required is 3255, all them with type 2 diabetes mellitus, older than 18 years, who regularly visit their Primary Health Care Centres and agree to participate. They are chosen by simple random sampling from the list of patients with type 2 diabetes mellitus of each general practitioner.The main outcome measures are all-cause and cardiovascular mortality and cardiovascular morbidity; and exposure variable is the major depressive disorder.There will be a comparison between depressed and not depressed patients in all-cause mortality, cardiovascular mortality, coronary artery disease and stroke using the Chi-squared test. Logistic regression with random effects will be used to adjust for prognostic factors. Confounding factors that might alter the effect recorded will be taken into account in this analysis. To assess the effect of depression on the mortality, a survival analysis will be used comparing the two groups using the log-rank test. The control of potential confounding variables will be performed by the construction of a Cox regression model., Discussion: Our study's main contribution is to evaluate the increase in the risk of cardiovascular morbidity and mortality, in depressed Spanish adults with type 2 diabetes mellitus attended in Primary Health Care Setting. It would also be useful to identify subgroups of patients for which the interventions could be more beneficial.
- Published
- 2012
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33. Trends in the prevalence and distribution of HTLV-1 and HTLV-2 infections in Spain.
- Author
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Treviño A, Aguilera A, Caballero E, Benito R, Parra P, Eiros JM, Hernandez A, Calderón E, Rodríguez M, Torres A, García J, Ramos JM, Roc L, Marcaida G, Rodríguez C, Trigo M, Gomez C, de Lejarazu RO, de Mendoza C, and Soriano V
- Subjects
- Adult, Female, HTLV-I Antibodies blood, HTLV-I Antibodies immunology, HTLV-I Infections immunology, HTLV-II Antibodies blood, HTLV-II Antibodies immunology, HTLV-II Infections immunology, Human T-lymphotropic virus 1 immunology, Human T-lymphotropic virus 2 immunology, Humans, Male, Middle Aged, Prevalence, Seroepidemiologic Studies, Spain epidemiology, HTLV-I Infections epidemiology, HTLV-II Infections epidemiology
- Abstract
Background: Although most HTLV infections in Spain have been found in native intravenous drug users carrying HTLV-2, the large immigration flows from Latin America and Sub-Saharan Africa in recent years may have changed the prevalence and distribution of HTLV-1 and HTLV-2 infections, and hypothetically open the opportunity for introducing HTLV-3 or HTLV-4 in Spain. To assess the current seroprevalence of HTLV infection in Spain a national multicenter, cross-sectional, study was conducted in June 2009., Results: A total of 6,460 consecutive outpatients attending 16 hospitals were examined. Overall, 12% were immigrants, and their main origin was Latin America (4.9%), Africa (3.6%) and other European countries (2.8%). Nine individuals were seroreactive for HTLV antibodies (overall prevalence, 0.14%). Evidence of HTLV-1 infection was confirmed by Western blot in 4 subjects (prevalence 0.06%) while HTLV-2 infection was found in 5 (prevalence 0.08%). Infection with HTLV types 1, 2, 3 and 4 was discarded by Western blot and specific PCR assays in another two specimens initially reactive in the enzyme immunoassay. All but one HTLV-1 cases were Latin-Americans while all persons with HTLV-2 infection were native Spaniards., Conclusions: The overall prevalence of HTLV infections in Spain remains low, with no evidence of HTLV-3 or HTLV-4 infections so far.
- Published
- 2012
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34. Validation of diabetes mellitus and hypertension diagnosis in computerized medical records in primary health care.
- Author
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de Burgos-Lunar C, Salinero-Fort MA, Cárdenas-Valladolid J, Soto-Díaz S, Fuentes-Rodríguez CY, Abánades-Herranz JC, and del Cura-González I
- Subjects
- Adult, Aged, Cross-Sectional Studies, Delayed Diagnosis, Diabetes Mellitus, Type 2 epidemiology, Diagnostic Errors, Female, Humans, Hypertension epidemiology, Male, Middle Aged, Prevalence, Sensitivity and Specificity, Spain epidemiology, Diabetes Mellitus, Type 2 diagnosis, Hypertension diagnosis, Medical Records Systems, Computerized, Primary Health Care
- Abstract
Background: Computerized Clinical Records, which are incorporated in primary health care practice, have great potential for research. In order to use this information, data quality and reliability must be assessed to prevent compromising the validity of the results.The aim of this study is to validate the diagnosis of hypertension and diabetes mellitus in the computerized clinical records of primary health care, taking the diagnosis criteria established in the most prominently used clinical guidelines as the gold standard against which what measure the sensitivity, specificity, and determine the predictive values.The gold standard for diabetes mellitus was the diagnostic criteria established in 2003 American Diabetes Association Consensus Statement for diabetic subjects. The gold standard for hypertension was the diagnostic criteria established in the Joint National Committee published in 2003., Methods: A cross-sectional multicentre validation study of diabetes mellitus and hypertension diagnoses in computerized clinical records of primary health care was carried out. Diagnostic criteria from the most prominently clinical practice guidelines were considered for standard reference.Sensitivity, specificity, positive and negative predictive values, and global agreement (with kappa index), were calculated. Results were shown overall and stratified by sex and age groups., Results: The agreement for diabetes mellitus with the reference standard as determined by the guideline was almost perfect (κ=0.990), with a sensitivity of 99.53%, a specificity of 99.49%, a positive predictive value of 91.23% and a negative predictive value of 99.98%.Hypertension diagnosis showed substantial agreement with the reference standard as determined by the guideline (κ=0.778), the sensitivity was 85.22%, the specificity 96.95%, the positive predictive value 85.24%, and the negative predictive value was 96.95%. Sensitivity results were worse in patients who also had diabetes and in those aged 70 years or over., Conclusions: Our results substantiate the validity of using diagnoses of diabetes and hypertension found within the computerized clinical records for epidemiologic studies.
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- 2011
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35. Decreased frequency and activated phenotype of blood CD27 IgD IgM B lymphocytes is a permanent abnormality in systemic lupus erythematosus patients.
- Author
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Rodríguez-Bayona B, Ramos-Amaya A, Pérez-Venegas JJ, Rodríguez C, and Brieva JA
- Subjects
- Adult, Aged, B-Lymphocyte Subsets immunology, B-Lymphocyte Subsets pathology, B-Lymphocytes pathology, Case-Control Studies, Cell Count, Cell Movement, Female, Humans, Lupus Erythematosus, Systemic pathology, Male, Middle Aged, Severity of Illness Index, B-Lymphocytes immunology, Immunoglobulin D metabolism, Immunoglobulin M metabolism, Lupus Erythematosus, Systemic immunology, Phenotype, Tumor Necrosis Factor Receptor Superfamily, Member 7 metabolism
- Abstract
Introduction: Systemic lupus erythematosus (SLE) is characterized by B cell hyper-activation and auto-reactivity resulting in pathogenic auto-antibody generation. The phenotypic analysis of blood B cell subsets can be used to understand these alterations., Methods: The combined detection of CD19, CD27 and IgD (or IgM) by flow cytometry (FC) analysis delineates five well-defined blood B cell-subsets: naive, switched (S) memory, double negative (DN) memory and CD27 IgD IgM (non-switched memory) B lymphocytes, and plasma cells (PCs). This phenotypic study was performed in 69 consecutive SLE patients and 31 healthy controls., Results: SLE patients exhibited several abnormalities in the distribution of these B cell subsets, including elevated levels of DN memory B cells and PCs, and decreased CD27 IgD IgM B cells. Active SLE patients also showed decreased presence of S memory B cells and increased proportions of naive B lymphocytes. Nevertheless, when the patients in remission who did not require treatment were studied separately, the only remaining abnormality was a reduction of the CD27 IgD IgM B cell-subset detectable in most of these patients. The level of reduction of CD27 IgD IgM B cells was associated with elevated values of serum SLE auto-antibodies. Further analysis of this latter B cell-subset specifically showed increased expression of CD80, CD86, CD95, 9G4 idiotype and functional CXCR3 and CXCR4., Conclusions: The presence of a reduced blood CD27 IgD IgM B cell-subset, exhibiting an activated state and enriched for auto-reactivity, is a consistent B cell abnormality in SLE. These findings suggest that CD27 IgD IgM B lymphocytes play a role in the pathogenesis of this disease.
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- 2010
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36. Test for positional candidate genes for body composition on pig chromosome 6.
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OVilo C, Oliver A, Noguera JL, Clop A, Barragán C, Varona L, Rodríguez C, Toro M, Sánchez A, Pérez-Enciso M, and Silió L
- Subjects
- Animals, Chromosome Mapping, Fatty Acid-Binding Proteins, Genetic Variation, Genotype, Linkage Disequilibrium genetics, Lipids analysis, Microsatellite Repeats genetics, Models, Genetic, Polymorphism, Restriction Fragment Length, Quantitative Trait, Heritable, Receptors, Leptin, Regression Analysis, Body Composition genetics, Carrier Proteins genetics, Chromosomes genetics, Neoplasm Proteins, Receptors, Cell Surface, Swine genetics
- Abstract
One QTL affecting backfat thickness (BF), intramuscular fat content (IMF) and eye muscle area (MA) was previously localized on porcine chromosome 6 in an F2 cross between Iberian and Landrace pigs. This work was done to study the effect of two positional candidate genes on these traits: H-FABP and LEPR genes. The QTL mapping analysis was repeated with a regression method using genotypes for seven microsatellites and two PCR-RFLPs in the H-FABP and LEPR genes. H-FABP and LEPR genes were located at 85.4 and 107 cM respectively, by linkage analysis. The effects of the candidate gene polymorphisms were analyzed in two ways. When an animal model was fitted, both genes showed significant effects on fatness traits, the H-FABP polymorphism showed significant effects on IMF and MA, and the LEPR polymorphism on BF and IMF. But when the candidate gene effect was included in a QTL regression analysis these associations were not observed, suggesting that they must not be the causal mutations responsible for the effects found. Differences in the results of both analyses showed the inadequacy of the animal model approach for the evaluation of positional candidate genes in populations with linkage disequilibrium, when the probabilities of the parental origin of the QTL alleles are not included in the model.
- Published
- 2002
- Full Text
- View/download PDF
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