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A revised version of Chapter F of the International Code of Nomenclature for algae, fungi, and plants is presented, incorporating amendments approved by the Fungal Nomenclature Session of the 11th International Mycological Congress held in San Juan, Puerto Rico in July 2018. The process leading to the amendments is outlined. Key changes in the San Juan Chapter F are (1) removal of option to use a colon to indicate the sanctioned status of a name, (2) introduction of correctability for incorrectly cited identifiers of names and typifications, and (3) introduction of option to use name identifiers in place of author citations. Examples have been added to aid the interpretation of new Articles and Recommendations, and Examples have also been added to the existing Art. F.3.7 concerning the protection extended to new combinations based on sanctioned names or basionyms of sanctioned names (which has been re-worded), and to Art. F.3.9 concerning typification of names accepted in the sanctioning works. [ABSTRACT FROM AUTHOR]

A commentary is provided on the seven formally published proposals to modify the provisions of the International Code of Nomenclature for algae, fungi, and plants (ICN) that will be dealt with by the Fungal Nomenclature Session (FNS) of the 11th International Mycological Congress (IMC11) in July 2018. The proposals deal with four issues: (1) clarification of the meaning of "original material" in relation to the typification of sanctioned names; (2) indication of the nomenclatural status of sanctioned names in author citations; (3) use of DNA sequences as nomenclatural types; and (4) use of repository identifiers as an alternative to author citations. Information is also provided on the composition and role of the Fungal Nomenclature Bureau and the operation of the FNS and the pre-Congress Guiding vote. [ABSTRACT FROM AUTHOR]

This article summarizes the key changes in the rules relating to the nomenclature of fungi made at the XIX International Botanical Congress in Shenzhen, China, in July 2017. Most significant was the decision to transfer decision-making on matters related only to the naming of fungi from International Botanical to International Mycological Congresses (IMCs). The rules relating to fungi are to be grouped together in a separate section of the International Code of Nomenclature for algae, fungi, and plants (ICN). The way in which the Fungal Nomenclature Session will operate at the upcoming IMC in Puerto Rico in 2018 is summarized and the timetable for new proposals is presented. In addition, approval for names included on lists of protected names to be protected against unlisted as well as known competing names were passed, as were some simplifications relating to the naming of pleomorphic fungi. From 1 January 2019, it will also be necessary to deposit details of lecto-, neo-, and epitypifications in one of the recognized repositories of fungal names in order for them to be validly published and to establish their priority. Various aspects relating to typifications were referred to a new Special Committee, with a separate Special Subcommittee charged with addressing the issue of using DNA sequences as types for all groups covered by the ICN. It is anticipated that the Shenzhen Code will be published in the first half of 2018. [ABSTRACT FROM AUTHOR]

Ratification of appointment of repositories by the International Mycological Congress is reported. The following two family names are recommended for conservation: Chrysotrichaceae against Pulverariaceae; and the teleomorphtypified Erysiphaceae against the anamorph-typified Oidiaceae. The following family name is not recommended for conservation: Dothioraceae against Saccotheciaceae. The following 10 generic names are recommended for conservation: the teleomorph-typified name Blumeria against the conserved anamorph-typified name Oidium; Catenaria Sorokīn (Fungi) against Catenaria Roussel (Algae); Chrysothrix, nom. cons., against an additional name, Alysphaeria; Flammula (Fr.: Fr.) P. Kumm. (Fungi) against Flammula (Webb ex Spach) Fourr. (Spermatophyta) with a conserved type; Fuscopannaria against Moelleropsis; Geastrum with a conserved type; Hebeloma with a conserved type; Polycaryum with that spelling; Pseudocyphellaria with a conserved type; and Talaromyces against Lasioderma. Conservation of Detonia Freng. (Algae) against Detonia Sacc. (Fungi) is not opposed. The following generic name is not recommended for conservation: Catillaria with a conserved type. The proposal to conserve the generic name Wickerhamomyces against Hansenula was withdrawn. The following 17 species names are recommended for conservation: Agaricus laterinus (Hebeloma laterinum) against the sanctioned A. fastibilis (H. fastibile); Agaricus tabescens against A. socialis; Alectoria fuscescens (Bryoria fuscescens) against Lichen chalybeiformis and A. subcana; Armillariella ostoyae (Armillaria ostoyae) against Agaricus obscurus, A. occultans, and Armillaria solidipes; Ganoderma camphoratum with a conserved type; Hebeloma fragilipes against Hebelomina domardiana (Hebeloma domardianum); Helminthosporium maydis Y. Nisik. & C. Miyake (Bipolaris maydis) against H. maydis Brond. and Ophiobolus heterostrophus; Lecidea oederi (Rhizocarpon oederi) against L. koenigii; Lichen fuscatus Schrad. (Acarospora fuscata) against L. fuscatus Lam. with a conserved type; Lichen leucomelos (Heterodermia leucomelos) with that spelling; Lichen muralis (Lecanora muralis, Protoparmeliopsis muralis) with a conserved type; Lichen vulgatus (Opegrapha vulgata) with a conserved type; Morchella semilibera against Phallus crassipes, P. gigas and P. undosus; Peziza ammophila Durieu & Lév. against P. ammophila Saut.; Polycaryum branchipodianum with that spelling; Stereocaulon pileatum with a conserved type; and Torula stilbospora with a conserved type. The following 22 species names (teleomorph-typified) are recommended for conservation against anamorph-typified names: Erysiphe arcuata against Oidium carpini; Erisyphe biocellata against Oidium erysiphoides; Erysiphe buhrii against Oidium dianthi; Erysiphe catalpae against Oidium bignoniae; Erysiphe celosiae against Oidium amaranthi; Erisyphe magnicellulata against O. drummondii; Erysiphe quercicola against Oidium anacardii; Erisyphe verbasci against Oidium balsamii; Golovinomyces sonchicola against Oidium sonchi-arvensis; Leveillula rutae against Oidium haplophylli; Microsphaera azaleae against O. ericinum; Microsphaera oehrensii against Oidium robustum; Phyllactinia alni against Ovulariopsis alni-formosanae; Phyllactinia ampelopsidis against Ovulariopsis ampelopsidis-heterophyllae; Phyllactinia chubutiana against Oidium insolitum; Phyllactinia dalbergiae against P. subspiralis; Phyllactinia gmelinae against Ovulariopsis gmelinae-arboreae; Phyllactinia populi against Ovulariopsis salicis-warburgii; Podosphaera solanacearum against Oidium saeforthiani; Sphaerotheca euphorbiae-hirtae against Oidium pedilanthi; Sphaerotheca filipendulae against Torula botryoides; and Sphaerotheca leucotricha against Oidium farinosum. The following two species names are not recommended for conservation: Cylindrocladium buxicola against C. pseudonaviculatum; and Verrucaria subcerasi (Arthopyrenia subcerasi) against A. subalbicans. It is recommended that the generic name Aspidelia and the species name Lichen quisquiliaris not be rejected under Art. 56. The following two species names are recommended for rejection under Art. 56: Botrytis farinosa (Peronospora farinosa) and Saccharomyces sphaericus. As a result of reference under Art. 53.5, it is recommended that the following two pairs of names are not to be treated as homonyms: Bertia De Not. and Bertya Planch.; and Otidea (Pers.) Bonord. and Otidia Sweet. [ABSTRACT FROM AUTHOR]

Six lists of names from working groups set up under Art. 14.13 are approved, consisting of three names of families, 43 names of genera and five names of species, to be treated as conserved against the listed synonymous or homonymous names. Lists were compiled by working groups approved by the International Commission on the Taxonomy of Fungi and the Nomenclature Committee for Fungi: on Cordyceps, Diaporthales, Dothideomycetes, Hypocreales, Leotiomycetes, and Trichoderma and Hypocrea. Issues around interpretation of Art. 14.13 and 56.3 and implementation of Art. 57.2 are discussed. [ABSTRACT FROM AUTHOR]

Recent studies using sequence data from eight sequence loci and coalescent-based species delimitation methods have revealed several species-level lineages of Tulasnella associated with the orchid genera Arthrochilus, Caleana, Chiloglottis, and Drakaea in Australia. Here we formally describe three of those species, Tulasnella prima, T. secunda, and T. warcupii spp. nov., as well as an additional Tulasnella species associated with Chiloglottis growing in Sphagnum, T. sphagneti sp. nov. Species were identified by phylogenetic analyses of the ITS with up to 1.3 % sequence divergence within taxa and a minimum of 7.6 % intraspecific divergence. These new Tulasnella (Tulasnellaceae, Cantharellales) species are currently only known from orchid hosts, with each fungal species showing a strong relationship with an orchid genus. In this study, T. prima and T. sphagneti associate with Chiloglottis, while T. secunda associates with Drakaea and Caleana, and T. warcupii associates with Arthrochilus oreophilus. [ABSTRACT FROM AUTHOR]

Procedures for preparing and submitting proposals to amend or enhance Chapter F of the International Code of Nomenclature for algae, fungi, and plants are provided. Such proposals will be considered by the Fungal Nomenclature Session of the XII International Mycological Congress to he held in Amsterdam in 2022. A timetable is laid out for the submission of proposals, due by 31 December 2021, their publication in IMA Fungus, the appearance of the 'Synopsis of proposals" and the conduct of the pre-Congress guiding vote. [ABSTRACT FROM AUTHOR]

With the change to one scientific name for fungal taxa, generic names typified by species with sexual or asexual morph types are being evaluated to determine which names represent the same genus and thus compete for use. In this paper generic names of the Agaricomycotina (Basidiomycota) were evaluated to determine synonymy based on their type. Forty-seven sets of sexually and asexually typified names were determined to be congeneric and recommendations are made for which generic name to use. In most cases the principle of priority is followed. However, 16 generic names are recommended for use that do not have priority and thus need to be protected: Aleurocystis over Matula; Armillaria over Acurtis and Rhizomorpha; Asterophora over Ugola; Botryobasidium over Acladium, Allescheriella, Alysidium, Haplotrichum, Physospora, and Sporocephalium; Coprinellus over Ozonium; Coprinopsis over Rhacophyllus; Dendrocollybia over Sclerostilbum and Tilachlidiopsis; Diacanthodes over Bornetina; Echinoporia over Echinodia; Neolentinus over Digitellus; Postia over Ptychogaster; Riopa over Sporotrichum; Scytinostroma over Artocreas, Michenera, and Stereofomes; Tulasnella over Hormomyces; Typhula over Sclerotium; and Wolfiporia over Gemmularia and Pachyma. Nine species names are proposed for protection: Botryobasidium aureum, B. conspersum, B. croceum, B. simile, Pellicularia lembosporum (syn. B. lembosporum), Phanerochaete chrysosporium, Polyporus metamorphosus (syn. Riopa metamorphosa), Polyporus mylittae (syn. Laccocephalum mylittae), and Polyporus ptychogaster (syn. Postia ptychogaster). Two families are proposed for protection: Psathyrellaceae and Typhulaceae. Three new species names and 30 new combinations are established, and one lectotype is designated. [ABSTRACT FROM AUTHOR]

It is now a decade since The International Commission on the Taxonomy of Fungi (ICTF) produced an overview of requirements and best practices for describing a new fungal species. In the meantime the International Code of Nomenclature for algae, fungi, and plants (ICNafp) has changed from its former name (the International Code of Botanical Nomenclature) and introduced new formal requirements for valid publication of species scientific names, including the separation of provisions specific to Fungi and organisms treated as fungi in a new Chapter F. Equally transformative have been changes in the data collection, data dissemination, and analytical tools available to mycologists. This paper provides an updated and expanded discussion of current publication requirements along with best practices for the description of new fungal species and publication of new names and for improving accessibility of their associated metadata that have developed over the last 10 years. Additionally, we provide: (1) model papers for different fungal groups and circumstances; (2) a checklist to simplify meeting (i) the requirements of the ICNafp to ensure the effective, valid and legitimate publication of names of new taxa, and (ii) minimally accepted standards for description; and, (3) templates for preparing standardized species descriptions. [ABSTRACT FROM AUTHOR]

True fungi (Fungi) and fungus-like organisms (e.g. Mycetozoa, Oomycota) constitute the second largest group of organisms based on global richness estimates, with around 3 million predicted species. Compared to plants and animals, fungi have simple body plans with often morphologically and ecologically obscure structures. This poses challenges for accurate and precise identifications. Here we provide a conceptual framework for the identification of fungi, encouraging the approach of integrative (polyphasic) taxonomy for species delimitation, i.e. the combination of genealogy (phylogeny), phenotype (including autecology), and reproductive biology (when feasible). This allows objective evaluation of diagnostic characters, either phenotypic or molecular or both. Verification of identifications is crucial but often neglected. Because of clade-specific evolutionary histories, there is currently no single tool for the identification of fungi, although DNA barcoding using the internal transcribed spacer (ITS) remains a first diagnosis, particularly in metabarcoding studies. Secondary DNA barcodes are increasingly implemented for groups where ITS does not provide sufficient precision. Issues of pairwise sequence similarity-based identifications and OTU clustering are discussed, and multiple sequence alignment-based phylogenetic approaches with subsequent verification are recommended as more accurate alternatives. In metabarcoding approaches, the trade-off between speed and accuracy and precision of molecular identifications must be carefully considered. Intragenomic variation of the ITS and other barcoding markers should be properly documented, as phylotype diversity is not necessarily a proxy of species richness. Important strategies to improve molecular identification of fungi are: (1) broadly document intraspecific and intragenomic variation of barcoding markers; (2) substantially expand sequence repositories, focusing on undersampled clades and missing taxa; (3) improve curation of sequence labels in primary repositories and substantially increase the number of sequences based on verified material; (4) link sequence data to digital information of voucher specimens including imagery. In parallel, technological improvements to genome sequencing offer promising alternatives to DNA barcoding in the future. Despite the prevalence of DNA-based fungal taxonomy, phenotype-based approaches remain an important strategy to catalog the global diversity of fungi and establish initial species hypotheses. [ABSTRACT FROM AUTHOR]

It is common practice in scientific journals to print genus and species names in italics. This is not only historical as species names were traditionally derived from Greek or Latin. Importantly, it also facilitates the rapid recognition of genus and species names when skimming through manuscripts. However, names above the genus level are not always italicized, except in some journals which have adopted this practice for all scientific names. Since scientific names treated under the various Codes of nomenclature are without exception treated as Latin, there is no reason why names above genus level should be handled differently, particularly as higher taxon names are becoming increasingly relevant in systematic and evolutionary studies and their italicization would aid the unambiguous recognition of formal scientific names distinguishing them from colloquial names. Several leading mycological and botanical journals have already adopted italics for names of all taxa regardless of rank over recent decades, as is the practice in the International Code of Nomenclature for algae, fungi, and plants, and we hereby recommend that this practice be taken up broadly in scientific journals and textbooks. [ABSTRACT FROM AUTHOR]