26 results on '"Fang, Yun"'
Search Results
2. The majority of microorganisms in gas hydrate-bearing subseafloor sediments ferment macromolecules
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Zhang, Chuwen, Fang, Yun-Xin, Yin, Xiuran, Lai, Hongfei, Kuang, Zenggui, Zhang, Tianxueyu, Xu, Xiang-Po, Wegener, Gunter, Wang, Jiang-Hai, and Dong, Xiyang
- Published
- 2023
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3. Role of postoperative chemoradiotherapy in head and neck cancer without positive margins or extracapsular extension: a propensity score-matching analysis
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Liu, Zhi-Qiao, OuYang, Pu-Yun, Zhang, Bao-Yu, Chen, En-Ni, Xiao, Su-Ming, Yang, Shan-Shan, Yang, Zhong-Yuan, and Xie, Fang-Yun
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- 2022
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- View/download PDF
4. Demographic history and divergence of sibling grouse species inferred from whole genome sequencing reveal past effects of climate change
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Song, Kai, Gao, Bin, Halvarsson, Peter, Fang, Yun, Klaus, Siegfried, Jiang, Ying-Xin, Swenson, Jon E., Sun, Yue-Hua, and Höglund, Jacob
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- 2021
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5. Validity and reliability of the simplified Chinese patient-reported outcomes version of the common terminology criteria for adverse events
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Yang, Shan-Shan, Chen, Lei, Liu, Ying, Lu, Hai-Jun, Huang, Bo-Jie, Lin, Ai-Hua, Sun, Ying, Ma, Jun, Xie, Fang-Yun, and Mao, Yan-Ping
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- 2021
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6. Genomic analysis of demographic history and ecological niche modeling in the endangered Chinese Grouse Tetrastes sewerzowi
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Song, Kai, Gao, Bin, Halvarsson, Peter, Fang, Yun, Jiang, Ying-Xin, Sun, Yue-Hua, and Höglund, Jacob
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- 2020
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7. Iterative sure independent ranking and screening for drug response prediction
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An, Biao, Zhang, Qianwen, Fang, Yun, Chen, Ming, and Qin, Yufang
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- 2020
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8. Egg laying and incubation rhythm of the Chinese Grouse (Tetrastes sewerzowi) at Lianhuashan, Gansu, China
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Shi, Mei, Fang, Yun, Zhao, Jin-ming, Klaus, Siegfried, Jiang, Yingxin, Swenson, Jon E., and Sun, Yue-Hua
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- 2019
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9. Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils
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Zhao, Zhi-Bo, He, Ji-Zheng, Geisen, Stefan, Han, Li-Li, Wang, Jun-Tao, Shen, Ju-Pei, Wei, Wen-Xue, Fang, Yun-Ting, Li, Pei-Pei, and Zhang, Li-Mei
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- 2019
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10. A comprehensive characterization of aggravated aging-related changes in T lymphocytes and monocytes in end-stage renal disease: the iESRD study
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Chiu, Yen-Ling, Shu, Kai-Hsiang, Yang, Feng-Jung, Chou, Tzu-Ying, Chen, Ping-Min, Lay, Fang-Yun, Pan, Szu-Yu, Lin, Cheng-Jui, Litjens, Nicolle H R, Betjes, Michiel G H, Bermudez, Selma, Kao, Kung-Chi, Chia, Jean-San, Wang, George, Peng, Yu-Sen, and Chuang, Yi-Fang
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- 2018
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11. External validity of a prognostic nomogram for locoregionally advanced nasopharyngeal carcinoma based on the 8th edition of the AJCC/UICC staging system: a retrospective cohort study
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OuYang, Pu-Yun, You, Kai-Yun, Zhang, Lu-Ning, Xiao, Yao, Zhang, Xiao-Min, and Xie, Fang-Yun
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- 2018
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12. Anti-cytomegalovirus IgG antibody titer is positively associated with advanced T cell differentiation and coronary artery disease in end-stage renal disease
- Author
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Yang, Feng-Jung, Shu, Kai-Hsiang, Chen, Hung-Yuan, Chen, I-Yu, Lay, Fang-Yun, Chuang, Yi-Fang, Wu, Chien-Sheng, Tsai, Wan-Chuan, Peng, Yu-Sen, Hsu, Shih-Ping, Chiang, Chih-Kang, Wang, George, and Chiu, Yen-Ling
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- 2018
- Full Text
- View/download PDF
13. Circ_0000745 strengthens the expression of CCND1 by functioning as miR-488 sponge and interacting with HuR binding protein to facilitate the development of oral squamous cell carcinoma
- Author
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Ziyi Yan, Jia Zhan, Kuang-Zheng Li, Fang-Yun Cao, Xiao-Sheng Fan, and Yixia Jiang
- Subjects
Cancer Research ,Cell cycle checkpoint ,Cell ,Flow cytometry ,CCND1 ,03 medical and health sciences ,0302 clinical medicine ,Cyclin D1 ,Downregulation and upregulation ,Genetics ,medicine ,RC254-282 ,Circ_0000745 ,030304 developmental biology ,0303 health sciences ,Gene knockdown ,QH573-671 ,medicine.diagnostic_test ,Cell growth ,Chemistry ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,miR-488 ,stomatognathic diseases ,medicine.anatomical_structure ,Oncology ,Apoptosis ,030220 oncology & carcinogenesis ,Cancer research ,HuR ,OSCC ,Cytology ,Primary Research - Abstract
Background The implication of circular RNAs (circRNAs) in human cancers has aroused much concern. In this study, we investigated the function of circ_0000745 and its potential functional mechanisms in oral squamous cell carcinoma (OSCC) to further understand OSCC pathogenesis. Methods The expression of circ_0000745, miR-488 and cyclin D1 (CCND1) mRNA was measured by quantitative real-time polymerase chain reaction (qPCR). Cell proliferation capacity was assessed by cell counting kit-8 (CCK-8) assay and colony formation assay. Cell cycle progression and cell apoptosis were determined by flow cytometry assay. The protein levels of CCND1, PCNA, Cleaved-caspase 3 and HuR were detected by western blot. Animal study was conducted to identify the role of circ_0000745 in vivo. The targeted relationship was verified by dual-luciferase reporter assay, pull-down assay or RNA immunoprecipitation (RIP) assay. Results The expression of circ_0000745 was increased in OSCC tissues and cells. Circ_0000745 downregulation inhibited OSCC cell proliferation and induced cell cycle arrest and apoptosis in vitro, as well as blocked tumor growth in vivo. MiR-488 was a target of circ_0000745, and circ_0000745 downregulation suppressed OSCC development by enriching miR-488. Besides, circ_0000745 regulated CCND1 expression by targeting miR-488. In addition, circ_0000745 regulated CCND1 expression by interacting with HuR protein. CCND1 knockdown also inhibited OSCC cell proliferation and induced cell cycle arrest and apoptosis in vitro, and CCND1 overexpression recovered the inhibitory effects on OSCC cell malignant behaviors caused by circ_0000745 downregulation. Conclusions Circ_0000745 regulated the expression of CCND1 partly by acting as miR-488 sponge and interacting with HuR protein, thus promoting the progression of OSCC.
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- 2021
14. Illumina identification of RsrA, a conserved C2H2 transcription factor coordinating the NapA mediated oxidative stress signaling pathway in Aspergillus
- Author
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Graeme S. Garvey, Philipp Wiemann, Fang Yun Lim, Nancy P. Keller, Jin Woo Bok, Brian J. Haas, and Jennifer R. Wortman
- Subjects
Transcription, Genetic ,Sterigmatocystin ,Mutant ,Mitosis ,Models, Biological ,Synteny ,Conserved sequence ,Fungal Proteins ,Aspergillus nidulans ,Next generation sequencing ,Gene Expression Regulation, Fungal ,CCAAT ,Genetics ,Transcription factor ,Conserved Sequence ,Regulation of gene expression ,Fungal protein ,biology ,Stress response ,Reproduction ,Genetic Complementation Test ,Wild type ,Hydrogen Peroxide ,Sequence Analysis, DNA ,Spores, Fungal ,biology.organism_classification ,AP-1 ,Blotting, Southern ,Meiosis ,Oxidative Stress ,Aspergillus ,Phenotype ,Mutagenesis ,Chromatography, Thin Layer ,Thioredoxin ,Gene Deletion ,Biotechnology ,Research Article ,Signal Transduction ,Transcription Factors - Abstract
Background Chemical mutagenesis screens are useful to identify mutants involved in biological processes of interest. Identifying the mutation from such screens, however, often fails when using methodologies involving transformation of the mutant to wild type phenotype with DNA libraries. Results Here we analyzed Illumina sequence of a chemically derived mutant of Aspergillus nidulans and identified a gene encoding a C2H2 transcription factor termed RsrA for regulator of stress response. RsrA is conserved in filamentous fungal genomes, and upon deleting the gene in three Aspergillus species (A. nidulans, A. flavus and A. fumigatus), we found two conserved phenotypes: enhanced resistance to oxidative stress and reduction in sporulation processes. For all species, rsrA deletion mutants were more resistant to hydrogen peroxide treatment. In depth examination of this latter characteristic in A. nidulans showed that upon exposure to hydrogen peroxide, RsrA loss resulted in global up-regulation of several components of the oxidative stress metabolome including the expression of napA and atfA, the two bZIP transcription factors mediating resistance to reactive oxygen species (ROS) as well as NapA targets in thioredoxin and glutathione systems. Coupling transcriptional data with examination of ΔrsrAΔatfA and ΔrsrAΔnapA double mutants indicate that RsrA primarily operates through NapA-mediated stress response pathways. A model of RsrA regulation of ROS response in Aspergillus is presented. Conclusion RsrA, found in a highly syntenic region in Aspergillus genomes, coordinates a NapA mediated oxidative response in Aspergillus fungi. Electronic supplementary material The online version of this article (doi:10.1186/1471-2164-15-1011) contains supplementary material, which is available to authorized users.
- Published
- 2014
15. Leucopenia and treatment efficacy in advanced nasopharyngeal carcinoma.
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Zhen Su, Yan-Ping Mao, Pu-Yun OuYang, Jie Tang, Xiao-Wen Lan, and Fang-Yun Xie
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LEUCOPENIA ,NASOPHARYNX cancer ,CANCER chemotherapy ,CANCER radiotherapy ,METASTASIS - Abstract
Background: Leucopenia or neutropenia during chemotherapy predicts better survival in several cancers. We aimed to assess whether leucopenia could be a biological measure of treatment and a marker of efficacy in advanced nasopharyngeal carcinoma (ANPC). Methods: We retrospectively analyzed 3826 patients with ANPC who received chemoradiotherapy. Leucopenia was categorised on the basis of worst grade during treatment according to the National Cancer Institute Common Toxicity Criteria version 4.0: no leucopenia (grade 0), mild leucopenia (grade 1-2), and severe leucopenia (grade 3-4). Associations between leucopenia and survival were estimated by Cox proportional hazards model. Results: Of the 3826 patients, 2511 (65.6 %) developed mild leucopenia (grade 1-2) and 807 (21.1 %) developed severe leucopenia (grade 3-4) during treatment; 508 (13.3 %) did not. A multivariate Cox model that included leucopenia determined that the hazard ratios (HR) of death for patients with mild and severe leucopenia were 0.69 [95 % confidence interval (95 %CI) 0.56-0.85, p < 0.001] and 0.75 (95 %CI 0.59-0.95, p = 0.019), respectively; the HR of distant metastasis for patients with mild and severe leucopenia were 0.77 (95 %CI 0.61-0.96, p = 0.023) and 0.99 (95 %CI 0.77-1.29, p = 0.995), respectively. Leucopenia had no effect on locoregional relapse. Conclusions: Our results indicate that mild leucopenia during chemoradiotherapy is associated with improved overall survival and distant metastasis-free survival in ANPC. Mild leucopenia may indicate appropriate dosage of chemotherapy. We can identify the patients who may benefit from chemotherapy if they experienced leucopenia during the treatment. Prospective trials are required to assess whether dosing adjustments based on leucopenia may improve chemotherapy efficacy. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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- View/download PDF
16. Illumina identification of RsrA, a conserved C2H2 transcription factor coordinating the NapA mediated oxidative stress signaling pathway in Aspergillus.
- Author
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Jin Woo Bok, Wiemann, Philipp, Garvey, Graeme S., Fang Yun Lim, Haas, Brian, Wortman, Jennifer, and Keller, Nancy P.
- Subjects
ASPERGILLUS ,OXIDATIVE stress ,DELETION mutation ,FUNGAL mutation ,HYDROGEN peroxide ,METHYLTRANSFERASES ,CHEMICAL mutagenesis ,TRANSCRIPTION factors ,FUNGI - Abstract
Background Chemical mutagenesis screens are useful to identify mutants involved in biological processes of interest. Identifying the mutation from such screens, however, often fails when using methodologies involving transformation of the mutant to wild type phenotype with DNA libraries. Results Here we analyzed Illumina sequence of a chemically derived mutant of Aspergillus nidulans and identified a gene encoding a C2H2 transcription factor termed RsrA for regulator of stress response. RsrA is conserved in filamentous fungal genomes, and upon deleting the gene in three Aspergillus species (A. nidulans, A. flavus and A. fumigatus), we found two conserved phenotypes: enhanced resistance to oxidative stress and reduction in sporulation processes. For all species, rsrA deletion mutants were more resistant to hydrogen peroxide treatment. In depth examination of this latter characteristic in A. nidulans showed that upon exposure to hydrogen peroxide, RsrA loss resulted in global up-regulation of several components of the oxidative stress metabolome including the expression of napA and atfA, the two bZIP transcription factors mediating resistance to reactive oxygen species (ROS) as well as NapA targets in thioredoxin and glutathione systems. Coupling transcriptional data with examination of ΔrsrAΔatfA and ΔrsrAΔnapA double mutants indicate that RsrA primarily operates through NapA-mediated stress response pathways. A model of RsrA regulation of ROS response in Aspergillus is presented. Conclusion RsrA, found in a highly syntenic region in Aspergillus genomes, coordinates a NapA mediated oxidative response in Aspergillus fungi. [ABSTRACT FROM AUTHOR]
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- 2014
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- View/download PDF
17. Effect of outdoor activity on myopia onset and progression in school-aged children in northeast China: the Sujiatun Eye Care Study.
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Jin, Ju-Xiang, Hua, Wen-Juan, Jiang, Xuan, Wu, Xiao-Yan, Yang, Ji-Wen, Gao, Guo-Peng, Fang, Yun, Pei, Chen-Lu, Wang, Song, Zhang, Jie-Zheng, Tao, Li-Ming, and Tao, Fang-Biao
- Abstract
Background: Due to its high prevalence and associated sight-threatening pathologies, myopia has emerged as a major health issue in East Asia. The purpose was to test the impact on myopia development of a school-based intervention program aimed at increasing the time student spent outdoors.Methods: A total of 3051 students of two primary (grades 1-5, aged 6-11) and two junior high schools (grades 7-8, aged 12-14) in both urban and rural Northeast China were enrolled. The intervention group (n = 1735) unlike the control group (n = 1316) was allowed two additional 20-min recess programs outside the classroom. A detailed questionnaire was administered to parents and children. Uncorrected visual acuity (UCVA) was measured using an E Standard Logarithm Vision Acuity Chart (GB11533-2011) at baseline, 6-month and 1-year intervals. A random subsample (n = 391) participated in the clinic visits and underwent cycloplegia at the beginning and after 1 year.Results: The mean UCVA for the entire intervention group was significantly better than the entire control group after 1 year (P < 0.001). In the subgroup study, new onset of myopia and changes in refractive error towards myopia were direction during the study period was significantly lower in the intervention group than in the control group (3.70 % vs. 8.50 %, P = 0.048; -0.10 ± 0.65 D/year vs. -0.27 ± 0.52 D/year, P = 0.005). Changes in axial length and IOP were also significantly lower following the intervention group (0.16 ± 0.30 mm/year vs. 0.21 ± 0.21 mm/year, P = 0.034; -0.05 ± 2.78 mmHg/year vs. 0.67 ± 2.21 mmHg/year, P = 0.006).Conclusions: Increasing outdoor activities prevented myopia onset and development, as well as axial growth and elevated IOP in children.Trial Registration: Current controlled trials NCT02271373. [ABSTRACT FROM AUTHOR]- Published
- 2015
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18. Anticancer drug sensitivity prediction in cell lines from baseline gene expression through recursive feature selection.
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Dong Z, Zhang N, Li C, Wang H, Fang Y, Wang J, and Zheng X
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- Antineoplastic Agents therapeutic use, Cell Line, Tumor, Humans, Neoplasm Proteins biosynthesis, Neoplasms pathology, Support Vector Machine, Gene Expression Regulation, Neoplastic drug effects, Neoplasms drug therapy, Neoplasms genetics, Precision Medicine
- Abstract
Background: An enduring challenge in personalized medicine is to select right drug for individual patients. Testing drugs on patients in large clinical trials is one way to assess their efficacy and toxicity, but it is impractical to test hundreds of drugs currently under development. Therefore the preclinical prediction model is highly expected as it enables prediction of drug response to hundreds of cell lines in parallel., Methods: Recently, two large-scale pharmacogenomic studies screened multiple anticancer drugs on over 1000 cell lines in an effort to elucidate the response mechanism of anticancer drugs. To this aim, we here used gene expression features and drug sensitivity data in Cancer Cell Line Encyclopedia (CCLE) to build a predictor based on Support Vector Machine (SVM) and a recursive feature selection tool. Robustness of our model was validated by cross-validation and an independent dataset, the Cancer Genome Project (CGP)., Results: Our model achieved good cross validation performance for most drugs in the Cancer Cell Line Encyclopedia (≥80% accuracy for 10 drugs, ≥75% accuracy for 19 drugs). Independent tests on eleven common drugs between CCLE and CGP achieved satisfactory performance for three of them, i.e., AZD6244, Erlotinib and PD-0325901, using expression levels of only twelve, six and seven genes, respectively., Conclusions: These results suggest that drug response could be effectively predicted from genomic features. Our model could be applied to predict drug response for some certain drugs and potentially play a complementary role in personalized medicine.
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- 2015
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19. Leucopenia and treatment efficacy in advanced nasopharyngeal carcinoma.
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Su Z, Mao YP, OuYang PY, Tang J, Lan XW, and Xie FY
- Subjects
- Adult, Aged, Aged, 80 and over, Biomarkers, Carcinoma, Chemotherapy-Induced Febrile Neutropenia diagnosis, Female, Follow-Up Studies, Humans, Kaplan-Meier Estimate, Leukopenia diagnosis, Male, Middle Aged, Nasopharyngeal Carcinoma, Nasopharyngeal Neoplasms mortality, Nasopharyngeal Neoplasms pathology, Neoplasm Metastasis, Neoplasm Staging, Retrospective Studies, Treatment Outcome, Young Adult, Antineoplastic Combined Chemotherapy Protocols adverse effects, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Leukopenia etiology, Nasopharyngeal Neoplasms complications, Nasopharyngeal Neoplasms therapy, Radiotherapy adverse effects
- Abstract
Background: Leucopenia or neutropenia during chemotherapy predicts better survival in several cancers. We aimed to assess whether leucopenia could be a biological measure of treatment and a marker of efficacy in advanced nasopharyngeal carcinoma (ANPC)., Methods: We retrospectively analyzed 3826 patients with ANPC who received chemoradiotherapy. Leucopenia was categorised on the basis of worst grade during treatment according to the National Cancer Institute Common Toxicity Criteria version 4.0: no leucopenia (grade 0), mild leucopenia (grade 1-2), and severe leucopenia (grade 3-4). Associations between leucopenia and survival were estimated by Cox proportional hazards model., Results: Of the 3826 patients, 2511 (65.6 %) developed mild leucopenia (grade 1-2) and 807 (21.1 %) developed severe leucopenia (grade 3-4) during treatment; 508 (13.3 %) did not. A multivariate Cox model that included leucopenia determined that the hazard ratios (HR) of death for patients with mild and severe leucopenia were 0.69 [95 % confidence interval (95 %CI) 0.56-0.85, p < 0.001] and 0.75 (95 %CI 0.59-0.95, p = 0.019), respectively; the HR of distant metastasis for patients with mild and severe leucopenia were 0.77 (95 %CI 0.61-0.96, p = 0.023) and 0.99 (95 %CI 0.77-1.29, p = 0.995), respectively. Leucopenia had no effect on locoregional relapse., Conclusions: Our results indicate that mild leucopenia during chemoradiotherapy is associated with improved overall survival and distant metastasis-free survival in ANPC. Mild leucopenia may indicate appropriate dosage of chemotherapy. We can identify the patients who may benefit from chemotherapy if they experienced leucopenia during the treatment. Prospective trials are required to assess whether dosing adjustments based on leucopenia may improve chemotherapy efficacy.
- Published
- 2015
- Full Text
- View/download PDF
20. Characterization of the enhancement of zero valent iron on microbial azo reduction.
- Author
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Fang Y, Xu M, Wu WM, Chen X, Sun G, Guo J, and Liu X
- Subjects
- Anaerobiosis, Hydrogen chemistry, Hydrogen metabolism, Iron metabolism, Microscopy, Electron, Scanning, Oxidation-Reduction, Shewanella metabolism, Shewanella ultrastructure, Wastewater, Azo Compounds chemistry, Coloring Agents chemistry, Electrons, Environmental Restoration and Remediation methods, Iron chemistry, Shewanella chemistry
- Abstract
Background: The microbial method for the treatment of azo dye is promising, but the reduction of azo dye is the rate-limiting step. Zero valent iron (Fe(0)) can enhance microbial azo reduction, but the interactions between microbes and Fe(0) and the potential mechanisms of enhancement remain unclear. Here, Shewanella decolorationis S12, a typical azo-reducing bacterium, was used to characterize the enhancement of Fe(0) on microbial decolorization., Results: The results indicated that anaerobic iron corrosion was a key inorganic chemical process for the enhancement of Fe(0) on microbial azo reduction, in which OH(-), H2, and Fe(2+) were produced. Once Fe(0) was added to the microbial azo reduction system, the proper pH for microbial azo reduction was maintained by OH(-), and H2 served as the favored electron donor for azo respiration. Subsequently, the bacterial biomass yield and viability significantly increased. Following the corrosion of Fe(0), nanometer-scale Fe precipitates were adsorbed onto cell surfaces and even accumulated inside cells as observed by transmission electron microscope energy dispersive spectroscopy (TEM-EDS)., Conclusions: A conceptual model for Fe(0)-assisted azo dye reduction by strain S12 was established to explain the interactions between microbes and Fe(0) and the potential mechanisms of enhancement. This model indicates that the enhancement of microbial azo reduction in the presence of Fe(0) is mainly due to the stimulation of microbial growth and activity by supplementation with elemental iron and H2 as an additional electron donor. This study has expanded our knowledge of the enhancement of microbial azo reduction by Fe(0) and laid a foundation for the development of Fe(0)-microbial integrated azo dye wastewater treatment technology.
- Published
- 2015
- Full Text
- View/download PDF
21. Illumina identification of RsrA, a conserved C2H2 transcription factor coordinating the NapA mediated oxidative stress signaling pathway in Aspergillus.
- Author
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Bok JW, Wiemann P, Garvey GS, Lim FY, Haas B, Wortman J, and Keller NP
- Subjects
- Aspergillus cytology, Aspergillus drug effects, Blotting, Southern, Chromatography, Thin Layer, Fungal Proteins genetics, Gene Deletion, Gene Expression Regulation, Fungal drug effects, Genetic Complementation Test, Hydrogen Peroxide pharmacology, Meiosis drug effects, Mitosis drug effects, Models, Biological, Phenotype, Reproduction drug effects, Spores, Fungal drug effects, Spores, Fungal growth & development, Sterigmatocystin biosynthesis, Synteny genetics, Transcription Factors metabolism, Transcription, Genetic drug effects, Aspergillus genetics, Conserved Sequence, Fungal Proteins metabolism, Oxidative Stress drug effects, Oxidative Stress genetics, Sequence Analysis, DNA, Signal Transduction drug effects, Signal Transduction genetics, Transcription Factors genetics
- Abstract
Background: Chemical mutagenesis screens are useful to identify mutants involved in biological processes of interest. Identifying the mutation from such screens, however, often fails when using methodologies involving transformation of the mutant to wild type phenotype with DNA libraries., Results: Here we analyzed Illumina sequence of a chemically derived mutant of Aspergillus nidulans and identified a gene encoding a C2H2 transcription factor termed RsrA for regulator of stress response. RsrA is conserved in filamentous fungal genomes, and upon deleting the gene in three Aspergillus species (A. nidulans, A. flavus and A. fumigatus), we found two conserved phenotypes: enhanced resistance to oxidative stress and reduction in sporulation processes. For all species, rsrA deletion mutants were more resistant to hydrogen peroxide treatment. In depth examination of this latter characteristic in A. nidulans showed that upon exposure to hydrogen peroxide, RsrA loss resulted in global up-regulation of several components of the oxidative stress metabolome including the expression of napA and atfA, the two bZIP transcription factors mediating resistance to reactive oxygen species (ROS) as well as NapA targets in thioredoxin and glutathione systems. Coupling transcriptional data with examination of ΔrsrAΔatfA and ΔrsrAΔnapA double mutants indicate that RsrA primarily operates through NapA-mediated stress response pathways. A model of RsrA regulation of ROS response in Aspergillus is presented., Conclusion: RsrA, found in a highly syntenic region in Aspergillus genomes, coordinates a NapA mediated oxidative response in Aspergillus fungi.
- Published
- 2014
- Full Text
- View/download PDF
22. Employing crisis postcards with case management in Kaohsiung, Taiwan: 6-month outcomes of a randomised controlled trial for suicide attempters.
- Author
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Chen WJ, Ho CK, Shyu SS, Chen CC, Lin GG, Chou LS, Fang YJ, Yeh PY, Chung TC, and Chou FH
- Subjects
- Adult, Female, Humans, Incidence, Male, Middle Aged, Suicide statistics & numerical data, Suicide, Attempted statistics & numerical data, Survival Analysis, Taiwan, Therapeutics, Young Adult, Case Management, Crisis Intervention methods, Suicidal Ideation, Suicide, Attempted prevention & control, Suicide Prevention
- Abstract
Background: Suicide attempts constitute a serious clinical problem and have important implications for healthcare resources. The aim of the present study was to evaluate the effectiveness of case management using crisis postcards over a 6-month follow-up period., Method: A randomised controlled trial was conducted in Kaohsiung, Taiwan. Prevention of further suicide attempts was compared between two groups with and without the postcard intervention. The intervention group consisted of 373 participants (139 males, 234 females; age: 39.8 ± 14.0 yrs.). The control group consisted of 388 participants (113 males, 275 females; age: 40.0 ± 16.0 yrs.). A survival analysis was used to test the effectiveness of the crisis postcard intervention for the prevention of suicide reattempts. Per-protocol and intention-to-treat analyses were conducted., Results: The intention-to-treat analysis indicated that the crisis postcard had no effect (hazard ratio = 0.84; 95% CI = 0.56 - 1.29), whereas the per-protocol analysis showed a strong benefit for the crisis postcard (hazard ratio = 0.39; 95% CI = 0.21 - 0.72)., Conclusion: Although the results of the present study indicated that the postcard intervention did not reduce subsequent suicide behaviour, our study provides an alteration to the postcard intervention. Further studies need to be conducted to clarify whether this type of intervention can reduce subsequent suicidal behaviour, with a particular focus on reducing the rate of loss to follow-up.
- Published
- 2013
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- View/download PDF
23. Factors determining the survival of nasopharyngeal carcinoma with lung metastasis alone: does combined modality treatment benefit?
- Author
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Cao X, He LR, Xie FY, Chen YF, and Wen ZS
- Subjects
- Adult, Carcinoma, Chemotherapy, Adjuvant, Disease-Free Survival, Female, Humans, Male, Middle Aged, Nasopharyngeal Carcinoma, Neoadjuvant Therapy, Neoplasm Recurrence, Local pathology, Prognosis, Retrospective Studies, Survival Rate, Lung Neoplasms secondary, Lung Neoplasms therapy, Nasopharyngeal Neoplasms pathology, Nasopharyngeal Neoplasms therapy
- Abstract
Background: Nasopharyngeal carcinoma (NPC) with lung metastasis alone has been reported as a relatively favorable prognostic group, and combined modality treatment might be indicated for selected cases. However, the prognostic factors determining survival of this group and the indication of combined therapy have not been thoroughly studied., Methods: We retrospectively reviewed 246 patients of NPC with lung metastasis(es) alone presented at diagnosis or as the first failure after primary treatment from 1993 to 2008 in an academic tertiary hospital. Univariate and multivariate survival analyses of post-metastasis survival (PMS) and overall survival (OS) were carried out to determine the prognostic factors., Results: The 3-year, 5-year, and 10-year of PMS and OS for the whole cohort were 34.3%, 17.0%, 8.6% and 67.8%, 45.4%, 18.5%, respectively. The median PMS (45.6 months vs. 23.7 months) and OS (73.7 months vs. 46.2 months) of patients treated with combined therapy was significantly longer than that of those treated with chemotherapy alone (P < 0.001). Age, disease-free interval (DFI) and treatment modality were evaluated as independent prognostic factors of OS, while only age and treatment modality retain their independent significance in PMS analysis. In stratified survival analysis, compared to chemotherapy alone, combined therapy could benefit the patients with DFI > 1 year, but not those with DFI ≤ 1 year., Conclusions: Age ≤ 45 years, DFI > 1 year, and the combined therapy were good prognostic factors for NPC patients with lung metastasis(es) alone. The combination of local therapy and the basic chemotherapy should be considered for these patients with DFI > 1 year.
- Published
- 2011
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24. Correlation of Skp2 overexpression to prognosis of patients with nasopharyngeal carcinoma from South China.
- Author
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Xu HM, Liang Y, Chen Q, Wu QN, Guo YM, Shen GP, Zhang RH, He ZW, Zeng YX, Xie FY, and Kang TB
- Subjects
- Adolescent, Adult, Aged, Carcinoma, Cell Line, Tumor, China, Disease-Free Survival, Female, Follow-Up Studies, Gene Knockdown Techniques, Humans, Male, Middle Aged, Nasopharyngeal Carcinoma, Nasopharyngeal Neoplasms genetics, Nasopharyngeal Neoplasms pathology, Neoplasm Staging, S-Phase Kinase-Associated Proteins genetics, Sex Factors, Survival Rate, Tissue Array Analysis, Transfection, Young Adult, Nasopharyngeal Neoplasms metabolism, Neoplastic Stem Cells pathology, RNA, Small Interfering genetics, S-Phase Kinase-Associated Proteins metabolism
- Abstract
S-phase kinase-associated protein 2 (Skp2), which plays a role in cell cycle regulation, is commonly overexpressed in a variety of human cancers and associated with poor prognosis. However, its role in nasopharyngeal carcinoma (NPC) is not well understood. In this study, we examined the clinical significance of Skp2, with a particular emphasis on overall survival (OS) and disease-free survival (DFS), in NPC cases in South China, where NPC is an epidemic. Additionally, we explored the function of Skp2 in maintaining a cancer stem cell-like phenotype in NPC cell lines. Skp2 expression was assessed for 127 NPC patients using tissue microarrays and immunohistochemistry and analyzed together with clinicopathologic features, OS, and DFS. Skp2 expression was detectable, or positive, in 75.6% of patients. Although there was no correlation between Skp2 and any clinicopathologic factor, Skp2 expression significantly portended inferior OS (P = 0.013) and DFS (P = 0.012). In the multivariate model, Skp2 expression remained significantly predictive of poor OS [P = 0.009, risk ratio (RR) = 4.06] and DFS (P = 0.008, RR = 3.56), and this was also true for clinical stage (P = 0.012 and RR=3.201 for OS; P = 0.002 and RR=1.94 for DFS) and sex (P = 0.016 and RR=0.31 for OS; P = 0.006 and RR = 0.27 for DFS). After Skp2 knockdown, a colony formation assay was used to evaluate the self-renewal property of stem-like cells in the NPC cell lines CNE-1 and CNE-2. The colony formation efficiency in CNE-1 and CNE-2 cells was decreased. In Skp2-transfected CNE-1 and CNE-2 cells, side population (SP) proportion was increased as detected by flow cytometry. Skp2 is an independent prognostic marker for OS and DFS in NPC. Skp2 may play a role in maintaining the cancer stem cell-like phenotype of NPC cell lines.
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- 2011
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25. The results and prognosis of different treatment modalities for solitary metastatic lung tumor from nasopharyngeal carcinoma: a retrospective study of 105 cases.
- Author
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Ma J, Wen ZS, Lin P, Wang X, and Xie FY
- Subjects
- Adult, Aged, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Combined Modality Therapy, Disease-Free Survival, Female, Follow-Up Studies, Humans, Lymphatic Metastasis, Male, Middle Aged, Neoplasm Recurrence, Local, Neoplasm Staging, Pneumonectomy methods, Radiotherapy, High-Energy, Remission Induction, Retrospective Studies, Survival Rate, Young Adult, Carcinoma, Squamous Cell secondary, Carcinoma, Squamous Cell therapy, Lung Neoplasms secondary, Lung Neoplasms therapy, Nasopharyngeal Neoplasms pathology
- Abstract
Background and Objective: Nasopharyngeal carcinoma (NPC) is known for its propensity for distant metastases. Lung metastasis is one of the most important causes of death for patients with NPC. Solitary metastatic lung tumor from NPC is a distinctive group associated with a better survival. This study was to find a more effective treatment modality and prognostic factors for the group., Methods: Clinical data of 105 cases of solitary metastatic lung tumor from NPC were retrospectively analyzed. Survival rate was calculated by the Kaplan-Meier method. The difference of survival between the patients treated by different modalities was evaluated by the log-rank test. The Cox univariate and multivariate analyses of gender, age, pathologic type, stage, adjuvant chemotherapy, evaluation of treatment for NPC, disease-free interval, size of metastatic tumor, pulmonary hilar and/or mediastinal lymph node metastasis, treatment modalities, recurrent distant metastases and/or relapse of NPC were conducted., Results: The local control rate was 53.8% in chemotherapy group, 88.0% in radiotherapy ± chemotherapy group, and 96.4% in operation ± chemotherapy group (P < 0.01). The most promising progression-free survival (PFS) and overall survival (OS) were obtained with operation ± chemotherapy and followed by radiotherapy ± chemotherapy. Both of them showed much better efficacy than chemotherapy (P < 0.001). The Cox multivariate analysis showed that recurrent distant metastases and/or relapse of NPC affected the survival (OR = 2.087, 95% CI = 1.277-3.410, P = 0.003). The T stage of NPC, size of metastatic tumor, hilar and/or mediastinal lymph node metastasis, and the treatment modality were independent prognostic factors., Conclusions: Operation ± chemotherapy and radiotherapy ± chemotherapy are better treatment of solitary metastatic lung tumor from NPC, which could improve the local control and prolong the PFS and OS. Chemotherapy is recommended for patients with higher T stage of NPC, size of metastatic tumor ≥ 3 cm, pulmonary hilar and/or mediastinal lymph node metastasis.
- Published
- 2010
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26. [Prophylactic irradiation of cervical lymph nodes for Stage-N0 nasopharyngeal carcinoma].
- Author
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Xie FY, Peng M, Hu WH, Han F, Wang X, and Xu HM
- Subjects
- Adult, Disease-Free Survival, Female, Follow-Up Studies, Humans, Male, Middle Aged, Nasopharyngeal Neoplasms pathology, Nasopharynx radiation effects, Neck radiation effects, Neoplasm Recurrence, Local, Neoplasm Staging, Particle Accelerators, Proportional Hazards Models, Radiotherapy Dosage, Retrospective Studies, Sex Factors, Survival Rate, Lymph Nodes pathology, Lymphatic Irradiation, Lymphatic Metastasis prevention & control, Nasopharyngeal Neoplasms radiotherapy, Radiotherapy, High-Energy methods
- Abstract
Background and Objective: It is controversial for the irradiation level and dose of the regional prevention for naspharyngeal cancer (NPC) with one or both cervical lymph node-negative neck. The study was to analyze the proophylactic irradiation of cervical lymph nodes for Stage -N0 NPC patients., Methods: From January 2002 and December 2004, 205 NPC patients with negative lymphadenopathy diagnosed by imaging, were retrospectively analyzed. Before treatment, each patient underwent CT or MRI. Facial-cervical portals and 6-8 MV photons were used in radiotherapy. Doses applied were 60-80 Gy to the nasopharynx and 46-64 Gy to the neck without lymphadenopathy. Consecutive radiotherapy was performed employing conventional fractionation of 2 Gy/fraction, once a day, for a total of five fractions per week. Chemotherapy was administered to 60 patients. Median follow-up was 44 months. The survival function was calculated according to the Kaplan-Meier method. A log-rank test was used to compare the differences in survival. The Cox proportional hazards model was used for multivariate analysis. A total of 205 patients with stage-N0 NPC were divided into an upper-neck irradiation group and an entire-neck group., Results: The 3-year overall survival rate (OS) was 92.9% and the 3-year disease-free survival rate (DFS) was 91.9%. A total of 88 patients received irradiation to the upper neck and 117 to the entire neck. The rate of regional failure for the upper-neck group and the entire-neck group were 2.27% and 0%, respectively (P>0.05). The rates of regional failure in patients with T1-, T2-, T3- and T4-stage disease were 0, 3.08%, 0, and 0, respectively (P>0.05). The rates of regional failure in the patients both without and with local failure were 1.03% and 0, respectively (P>0.05). The 1-and 3-year OS for the upper-neck group were 97.7% and 94.2%, and the 1- and 3-year OS for the entire-neck group were 97.4% and 91.9% (P=0.950). The 1- and 3-year DFS for the upper-neck group were 96.6% and 92.9%, and the 1- and 3-year DFS for the entire-neck group were 95.6% and 90.9% (P= 0.730). In multivariate analysis, sex (P=0.039) and T stage (P=0.004) were independent prognosis factors for patients with stage-N0 NPC., Conclusions: Prophylactic irradiation to the upper neck does not influence regional failure or long-term survival in the patients with stage-N0 NPC. Radiotherapy to the upper neck (levels II, III, VA) is recommended for the patients with stage-N0 NPC. Involvement of the parapharyngeal space, T stage, and the rates of local failure do not influence regional failure in these patients. Sex and T stage were independent prognosis factors of stage-N0 NPC patients.
- Published
- 2010
- Full Text
- View/download PDF
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