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We present a physically intuitive model of molecular quantum dots beyond the constant interaction approximation. It accurately describes their charging behavior and allows the extraction of important molecular properties that are otherwise experimentally inaccessible. The model is applied to data recorded with a noncontact atomic force microscope on three different molecules that act as a quantum dot when attached to the microscope tip. The results are in excellent agreement with first-principles simulations.

The understanding of the fundamental physical properties of metal-organic and organic-organic interfaces is crucial for improving the performance of organic electronic devices. This is particularly true for (multilayer) systems containing several molecular species due to their relevance for donor-acceptor systems. A prototypical heteromolecular bilayer system is copper-II-phthalocyanine (CuPc) on 3,4,9,10-perylene-tetra-carboxylic-dianhydride (PTCDA) on Ag(111). In an earlier work we have reported a commensurate registry between both organic layers and an enhanced charge transfer from the Ag substrate into the organic bilayer film [Phys. Rev. Lett. 108, 106103 (2012)], which both indicate an unexpectedly strong intermolecular interaction across the organic-organic interface. Here we present new details regarding electronic and geometric structure for the same system. In particular, we provide evidence that the enhanced charge transfer from the substrate into the organic bilayer does not involve CuPc electronic states, hence, there is no significant charge transfer into the second organic layer. Furthermore, we report vertical bonding distances revealing a shortening of the PTCDA-Ag(111) distance upon CuPc adsorption. Thus, electronic and geometric properties (charge transfer and bonding distance, respectively) both indicate a strengthening of the PTCDA-Ag(111) bond upon CuPc adsorption. We explain these findings---in particular the correlation between CuPc adsorption and increased charge transfer into PTCDA---in a model involving an intermolecular screening mechanism.

The formation of metalorganic hybrid interfaces is determined by the fine balance between molecule-substrate and molecule-molecule interactions at the interface. Here, we report on a systematic investigation of interfaces between a metal surface and organic monolayer films that consist of two different molecular species, one donor and one acceptor of electronic charge. Our x-ray standing wave data show that in heteromolecular structures, the molecules tend to align themselves to an adsorption height between those observed in the respective homomolecular structures. We attribute this alignment effect to a substrate-mediated charge transfer between the molecules, which causes a mutual enhancement of their respective donor and acceptor characters. We argue that this effect is of general validity for $\ensuremath{\pi}$-conjugated molecules adsorbing on noble metal surfaces.

We present evidence for a partly chemisorptive bonding between single monolayers of copper-II-phthalocyanine (CuPc) and 3,4,9,10-perylene-tetracarboxylic-dianhydride (PTCDA) that are stacked on Ag(111). A commensurate registry between the two molecular layers and the substrate, i.e., a common crystallographic lattice for CuPc and PTCDA films as well as for the Ag(111) surface, indicates that the growth of the upper layer is dominated by the structure of the lower. Photoemission spectroscopy clearly reveals a gradual filling of the lowest unoccupied molecular orbital of PTCDA due to CuPc adsorption, which proves the chemisorptive character.