1. Weak-evidence Fusion Candidates Detected by a FusionPlex Assay Using the Ion Torrent System
- Author
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Satoshi Tsukushi, Eiichi Sasaki, Yoshitsugu Horio, Shiro Fujita, Hiroaki Kuroda, Katsuhiro Masago, and Toyoaki Hida
- Subjects
Pharmacology ,Oncology ,Cancer Research ,medicine.medical_specialty ,Oncogene Proteins, Fusion ,High-Throughput Nucleotide Sequencing ,Sarcoma ,Ion semiconductor sequencing ,Protein-Tyrosine Kinases ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Fusion gene ,03 medical and health sciences ,0302 clinical medicine ,Proto-Oncogene Proteins ,030220 oncology & carcinogenesis ,Internal medicine ,medicine ,Humans ,Research Article - Abstract
Background/aim The Archer FusionPlex platform is widely used for comprehensive fusion-gene detection in cancer tissues. This platform separately displays results for strong-evidence and weak-evidence fusion candidates (WEFCs). Distinctive fusion patterns are frequently found in the weak-evidence category and information about the patterns is clinically essential. Patients and methods We describe the type and frequency of WEFCs observed using the FusionPlex Sarcoma Panel (S Panel) and the FusionPlex ALK, RET, and ROS1 ver2 Panel (ARR Panel). Results A total of 97 specimens were examined and 620 candidates were detected and categorized as WEFCs. A median of five WEFCs were detected per sample. In the S Panel group, there were 13 WEFCs with a frequency of more than 1%. In the ARR Panel group, a total of 16 WEFCs were detected with a frequency of more than 1%. Conclusion Specific WEFCs were detected according to the panel selected.
- Published
- 2021