10 results on '"Burr SE"'
Search Results
2. Development and evaluation of a next-generation digital PCR diagnostic assay for ocular Chlamydia trachomatis infections.
- Author
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Roberts CH, Last A, Molina-Gonzalez S, Cassama E, Butcher R, Nabicassa M, McCarthy E, Burr SE, Mabey DC, Bailey RL, and Holland MJ
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Child, Child, Preschool, Female, Guinea-Bissau, Humans, Infant, Infant, Newborn, Male, Middle Aged, Predictive Value of Tests, ROC Curve, Sensitivity and Specificity, Young Adult, Bacteriological Techniques methods, Chlamydia trachomatis isolation & purification, Polymerase Chain Reaction methods, Trachoma diagnosis, Trachoma microbiology
- Abstract
Droplet digital PCR (ddPCR) is an emulsion PCR process that performs absolute quantitation of nucleic acids. We developed a ddPCR assay for Chlamydia trachomatis infections and found it to be accurate and precise. Using PCR mixtures containing plasmids engineered to include the PCR target sequences, we were able to quantify with a dynamic range between 0.07 and 3,160 targets/μl (r(2) = 0.9927) with >95% confidence. Using 1,509 clinical conjunctival swab samples from a population in which trachoma is endemic in Guinea Bissau, we evaluated the specificity and sensitivity of the quantitative ddPCR assay in diagnosing ocular C. trachomatis infections by comparing the performances of ddPCR and the Roche Amplicor CT/NG test. We defined ddPCR tests as positive when we had ≥95% confidence in a nonzero estimate of target load. The sensitivity of ddPCR against Amplicor was 73.3% (95% confidence interval [CI], 67.9 to 78.7%), and specificity was 99.1% (95% CI, 98.6 to 99.6%). Negative and positive predictive values were 94.6% (95% CI, 93.4 to 95.8%) and 94.5% (95% CI, 91.3 to 97.7%), respectively. Based on Amplicor CT/NG testing, the estimated population prevalence of C. trachomatis ocular infection was ∼17.5%. Receiver-operator curve analysis was used to select critical cutoff values for use in clinical settings in which a balance between higher sensitivity and specificity is required. We concluded that ddPCR is an effective diagnostic technology suitable for both research and clinical use in diagnosing ocular C. trachomatis infections.
- Published
- 2013
- Full Text
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3. Active trachoma is associated with increased conjunctival expression of IL17A and profibrotic cytokines.
- Author
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Burton MJ, Ramadhani A, Weiss HA, Hu V, Massae P, Burr SE, Shangali W, Holland MJ, Mabey DC, and Bailey RL
- Subjects
- Child, Child, Preschool, Conjunctiva pathology, Cross-Sectional Studies, Cytokines genetics, Female, Humans, Inflammation metabolism, Interleukin-17 genetics, Male, Tanzania epidemiology, Trachoma epidemiology, Trachoma immunology, Conjunctiva metabolism, Cytokines metabolism, Gene Expression Regulation immunology, Interleukin-17 metabolism, Trachoma metabolism
- Abstract
The immunological basis of scarring trachoma is not well understood. It is unclear whether it is driven primarily through cell-mediated adaptive or epithelial-cell-derived innate responses. The purpose of this study was to investigate the expression of the inflammatory and fibrogenic mediators which may be involved. We conducted a cross-sectional survey of children living in an untreated trachoma-endemic community in Tanzania. The children were examined for signs of trachoma, and swabs were collected for bacteriological culture and RNA and DNA isolation. Chlamydia trachomatis was detected by the Amplicor PCR test. The expression of the following genes was measured by quantitative reverse transcription-PCR (RT-PCR): S100A7, IL1B, IL17A, IL23A, CXCL5, CCL18, TLR2, NLRP3, KLRD1, CTGF, and MMP9. Four hundred seventy children under the age of 10 years were included. Follicular trachoma (TF) was detected in 65 children (14%), C. trachomatis was detected in 25 (5%), and bacterial pathogens were cultured in 161 (34%). TF was associated with significantly increased expression of S100A7, IL17A, CCL18, CXCL5, and CTGF. Expression was increased further in the presence of papillary inflammation. Nonchlamydial bacterial infection was associated with increased expression of IL17A, CXCL5, CCL18, and KLRD1. IL17A expression was associated with increased expression of S100A7, CXCL5, CCL18, KLRD1, and CTGF. These data are consistent with a role for IL-17A in orchestrating the proinflammatory response in trachoma. Its activity may be promoted either as part of the cell-mediated response or through innate pathways. It may drive a range of proinflammatory factors leading to excessive tissue damage and repair involving fibrosis.
- Published
- 2011
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4. Aeromonas salmonicida subsp. salmonicida type strain does not possess a type III secretion system.
- Author
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Burr SE and Frey J
- Subjects
- Aeromonas salmonicida genetics, DNA, Bacterial genetics, Genes, Bacterial, Humans, Nucleic Acid Hybridization, Protein Transport, Aeromonas salmonicida metabolism, Bacterial Proteins metabolism, Membrane Transport Proteins genetics
- Published
- 2009
- Full Text
- View/download PDF
5. The AsaP1 peptidase of Aeromonas salmonicida subsp. achromogenes is a highly conserved deuterolysin metalloprotease (family M35) and a major virulence factor.
- Author
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Arnadottir H, Hvanndal I, Andresdottir V, Burr SE, Frey J, and Gudmundsdottir BK
- Subjects
- Aeromonas salmonicida pathogenicity, Animals, DNA Primers, Fish Diseases genetics, Fish Diseases microbiology, Gene Library, Metalloproteases chemistry, Plasmids, Salmo salar microbiology, Virulence Factors genetics, src Homology Domains, Aeromonas salmonicida enzymology, Aeromonas salmonicida genetics, Bacterial Proteins genetics, Metalloproteases genetics, Peptide Hydrolases genetics, Proto-Oncogene Proteins c-crk genetics, Virulence genetics
- Abstract
Infections by the bacterium Aeromonas salmonicida subsp. achromogenes cause significant disease in a number of fish species. In this study, we showed that AsaP1, a toxic 19-kDa metallopeptidase produced by A. salmonicida subsp. achromogenes, belongs to the group of extracellular peptidases (Aeromonas type) (MEROPS ID M35.003) of the deuterolysin family of zinc-dependent aspzincin endopeptidases. The structural gene of AsaP1 was sequenced and found to be highly conserved among gram-negative bacteria. An isogenic Delta asaP1 A. salmonicida subsp. achromogenes strain was constructed, and its ability to infect fish was compared with that of the wild-type (wt) strain. The Delta asaP1 strain was found to infect Arctic charr, Atlantic salmon, and Atlantic cod, but its virulence was decreased relative to that of the wt strain. The 50% lethal dose of the AsaP1 mutant was 10-fold higher in charr and 5-fold higher in salmon than that of the wt strain. The pathology induced by the AsaP1-deficient strain was also different from that of the wt strain. Furthermore, the mutant established significant bacterial colonization in all observed organs without any signs of a host response in the infected tissue. AsaP1 is therefore the first member of the M35 family that has been shown to be a bacterial virulence factor.
- Published
- 2009
- Full Text
- View/download PDF
6. Alternative host model to evaluate Aeromonas virulence.
- Author
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Froquet R, Cherix N, Burr SE, Frey J, Vilches S, Tomas JM, and Cosson P
- Subjects
- Aeromonas hydrophila classification, Aeromonas hydrophila genetics, Aeromonas salmonicida classification, Aeromonas salmonicida genetics, Animals, Dictyostelium growth & development, Humans, Serotyping, Species Specificity, Virulence, Aeromonas hydrophila pathogenicity, Aeromonas salmonicida pathogenicity, Dictyostelium microbiology, Disease Models, Animal
- Abstract
Bacterial virulence can only be assessed by confronting bacteria with a host. Here, we present a new simple assay to evaluate Aeromonas virulence, making use of Dictyostelium amoebae as an alternative host model. This assay can be modulated to assess virulence of very different Aeromonas species.
- Published
- 2007
- Full Text
- View/download PDF
7. The ADP-ribosylating toxin, AexT, from Aeromonas salmonicida subsp. salmonicida is translocated via a type III secretion pathway.
- Author
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Burr SE, Stuber K, and Frey J
- Subjects
- ADP Ribose Transferases chemistry, ADP Ribose Transferases genetics, Aeromonas metabolism, Aeromonas pathogenicity, Animals, Bacterial Outer Membrane Proteins chemistry, Bacterial Outer Membrane Proteins genetics, Bacterial Toxins chemistry, Bacterial Toxins genetics, Carps virology, Cells, Cultured, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Oncorhynchus mykiss virology, Protein Transport, Sequence Analysis, DNA, ADP Ribose Transferases metabolism, Aeromonas enzymology, Bacterial Outer Membrane Proteins metabolism, Bacterial Toxins metabolism
- Abstract
AexT is an extracellular ADP ribosyltransferase produced by the fish pathogen Aeromonas salmonicida subsp. salmonicida. The protein is secreted by the bacterium via a recently identified type III secretion system. In this study, we have identified a further 12 open reading frames that possess high homology to genes encoding both structural and regulatory components of the Yersinia type III secretion apparatus. Using marker replacement mutagenesis of aopB, the A. salmonicida subsp. salmonicida homologue of yopB in Yersinia, we demonstrate that the bacterium translocates the AexT toxin directly into the cytosol of cultured fish cells via this type III secretion pathway. An acrV mutant of A. salmonicida subsp. salmonicida displays a calcium-blind phenotype, expressing and secreting significant amounts of AexT even in the presence of CaCl2 concentrations as high as 10 mM. This acrV mutant is also unable to translocate AexT into the cytosol of fish cells, indicating AcrV is involved in the translocation process. Inactivation of either the aopB or acrV gene in A. salmonicida subsp. salmonicida (resulting in an inability to translocate AexT) is accompanied by a loss of cytotoxicity that can be restored by trans complementation. Finally, we present data indicating that preincubation of the wild-type bacteria with antibodies directed against recombinant AcrV-His protein provides fish cells protection against the toxic effects of the bacterium.
- Published
- 2003
- Full Text
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8. Type III secretion genes in Aeromonas salmonicida subsp salmonicida are located on a large thermolabile virulence plasmid.
- Author
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Stuber K, Burr SE, Braun M, Wahli T, and Frey J
- Subjects
- Humans, Thermodynamics, Virulence genetics, Aeromonas genetics, Aeromonas virology, Genes, Bacterial, Plasmids
- Abstract
Type III secretion genes in Aeromonas salmonicida subsp. salmonicida are located on a large plasmid of approximately 140 kb. Cultivation of this organism at elevated temperatures such as 25 degrees C can, however, result in loss of this plasmid. This is accompanied by a loss of virulence for cultured fish cells.
- Published
- 2003
- Full Text
- View/download PDF
9. Evidence for a type III secretion system in Aeromonas salmonicida subsp. salmonicida.
- Author
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Burr SE, Stuber K, Wahli T, and Frey J
- Subjects
- ADP Ribose Transferases genetics, Aeromonas genetics, Aeromonas pathogenicity, Animals, Bacterial Proteins genetics, Base Sequence, Cell Line, Cloning, Molecular, DNA, Bacterial, Molecular Sequence Data, Oncorhynchus mykiss, Sequence Analysis, DNA, ADP Ribose Transferases metabolism, Aeromonas metabolism, Bacterial Proteins metabolism, Operon physiology, Virulence Factors
- Abstract
Aeromonas salmonicida subsp. salmonicida, the etiological agent of furunculosis, is an important fish pathogen. We have screened this bacterium with a broad-host-range probe directed against yscV, the gene that encodes the archetype of a highly conserved family of inner membrane proteins found in every known type III secretion system. This has led to the identification of seven open reading frames that encode homologues to proteins functioning within the type III secretion systems of Yersinia species. Six of these proteins are encoded by genes comprising a virA operon. The A. salmonicida subsp. salmonicida yscV homologue, ascV, was inactivated by marker replacement mutagenesis and used to generate an isogenic ascV mutant. Comparison of the extracellular protein profiles from the ascV mutant and the wild-type strain indicates that A. salmonicida subsp. salmonicida secretes proteins via a type III secretion system. The recently identified ADP-ribosylating toxin AexT was identified as one such protein. Finally, we have compared the toxicities of the wild-type A. salmonicida subsp. salmonicida strain and the ascV mutant against RTG-2 rainbow trout gonad cells. While infection with the wild-type strain results in significant morphological changes, including cell rounding, infection with the ascV mutant has no toxic effect, indicating that the type III secretion system we have identified plays an important role in the virulence of this pathogen.
- Published
- 2002
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10. Type II secretion by Aeromonas salmonicida: evidence for two periplasmic pools of proaerolysin.
- Author
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Burr SE, Diep DB, and Buckley JT
- Subjects
- Bacterial Toxins genetics, Dimerization, Gene Expression Regulation, Bacterial, Nucleic Acid Conformation, Pore Forming Cytotoxic Proteins, Protein Folding, Protein Sorting Signals, Protein Structure, Quaternary, Aeromonas metabolism, Bacterial Proteins metabolism, Bacterial Toxins metabolism, Periplasm metabolism
- Abstract
Aeromonas salmonicida containing the cloned gene for proaerolysin secretes the protein via the type II secretory pathway. Here we show that altering a region near the beginning of aerA led to a dramatic increase in the amount of proaerolysin that was produced and that a large amount of the protein was cell associated. All of the cell-associated protein had crossed the cytoplasmic membrane, because the signal sequence had been removed, and all of it was accessible to processing by trypsin during osmotic shock. Enlargement of the periplasm was observed by electron microscopy in overproducing cells, likely caused by the osmotic effect of the very large concentrations of accumulated proaerolysin. Immunogold electron microscopy localized nearly all of the proaerolysin in the enlarged periplasm; however, only half of the protoxin was released from the cells by osmotic shocking. Cross-linking studies showed that this fraction contained normal dimeric proaerolysin but that proaerolysin in the fraction that was not shockable had not dimerized, although it appeared to be correctly folded. Both periplasmic fractions were secreted by the cells; however, the nonshockable fraction was secreted much more slowly than the shockable fraction. We estimated a rate for maximal secretion of proaerolysin from the bacteria that was much lower than the rates that have been estimated for inner membrane transit, which suggests that transit across the outer membrane is rate limiting and may account for the periplasmic accumulation of the protein. Finally, we show that overproduction of proaerolysin inhibited the release of the protease that is secreted by A. salmonicida.
- Published
- 2001
- Full Text
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