1. Modeling the Complex Adsorption Dynamics of Large Organic Molecules: Cyclooctyne on Si(001)
- Author
-
Sebastian Schmidt, Ralf Tonner, and Lisa Pecher
- Subjects
Chemistry ,Dynamics (mechanics) ,Ab initio ,Complex system ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Organic molecules ,General Energy ,Adsorption ,Chemical physics ,Computational chemistry ,Potential energy surface ,Molecule ,Density functional theory ,Physical and Theoretical Chemistry ,0210 nano-technology - Abstract
Surprising adsorption dynamics in terms of an either direct or pseudodirect pathway in contrast to common precursor-mediated surface reactions is shown for the title system by theoretical investigations. We present a computational protocol for the description of the adsorption dynamics in this complex system that is transferable to other large molecules. The system size prohibits the use of established accurate methods, and approximations have to be made and validated. Our approach combines potential energy surface scans, reaction path determination methods, statistical thermodynamics, and ab initio molecular dynamics simulations based on density functional theory (DFT). This leads to a conclusive picture of adsorption dynamics in the limits of DFT accuracy and shows how a thoughtful selection of methods can comprehensively describe the adsorption dynamics of an experimentally relevant system that might seem too complex for ab initio approaches at first glance.
- Published
- 2017
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