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Peptide fibrillization is crucial in biological processes such as amyloid-related diseases and hormone storage, involving complex transitions between folded, unfolded, and aggregated states. We here employ light to induce reversible transitions between aggregated and nonaggregated states of a peptide, linked to the parathyroid hormone (PTH). The artificial light-switch 3-{[(4-aminomethyl)phenyl]diazenyl}benzoic acid (AMPB) is embedded into a segment of PTH, the peptide PTH 25-37 , to control aggregation, revealing position-dependent effects. Through in silico design, synthesis, and experimental validation of 11 novel PTH 25-37 -derived peptides, we predict and confirm the amyloid-forming capabilities of the AMPB-containing peptides. Quantum-chemical studies shed light on the photoswitching mechanism. Solid-state NMR studies suggest that β-strands are aligned parallel in fibrils of PTH 25-37 , while in one of the AMPB-containing peptides, β-strands are antiparallel. Simulations further highlight the significance of π-π interactions in the latter. This multifaceted approach enabled the identification of a peptide that can undergo repeated phototriggered transitions between fibrillated and defibrillated states, as demonstrated by different spectroscopic techniques. With this strategy, we unlock the potential to manipulate PTH to reversibly switch between active and inactive aggregated states, representing the first observation of a photostimulus-responsive hormone.

With quantum chemical calculations at the density functional theory level, we examined the structure and the stability of diactinyl monohydroxo complexes [(AnO 2 ) 2 (OH)] 3+/+ in aqueous solution for An = U(VI), Np(VI), and Np(V). In particular, this study contributes to understanding the hydrolysis of Np(VI) and Np(V), which is less well characterized than for U(VI). [(UO 2 ) 2 (OH)] 3+ is a known hydrolysis complex of U(VI) at low pH. Although not yet found in experiments, [(NpO 2 ) 2 (OH)] 3+ is suggested to exist due to the similarity between Np(VI) and U(VI) complexes, while [(NpO 2 ) 2 (OH)] + is a hypothetical species thus far. Our calculations suggest that the An(VI) complexes favor the parallel orientation of actinyls, whereas for the Np(V) complex a perpendicular arrangement is stabilized by hydrogen bonds between aqua ligands and the actinyl oxygen atoms. The Np(VI) complex [(NpO 2 ) 2 (OH)] 3+ features a structure and stability similar to its U(VI) analogue. From calculated formation constants for An(VI) diactinyl monohydroxo complexes, we find qualitative agreement with the experiment for U(VI). Both An(VI) complexes are only slightly less stable than the separate mononuclear constituents, the actinyl aqua and the monohydroxo complex. For the Np(V) species [(NpO 2 ) 2 (OH)] + , we calculated a considerably lower complexation constant than for its An(VI) analogues, but it is more stable against decay into its constituents. Thus, this complex may exist at about the pH where Np(V) hydrolysis starts at not too low Np(V) concentrations.

We studied the hydration and the first hydrolysis reaction of U(IV) and Np(IV) ions in an aqueous environment, applying a relativistic density functional method together with a recently proposed variant of a continuum solvation model where the solute cavities are constructed with effective atomic radii, based on charge-dependent scaling factors. In this way, one obtains improved solvation energies of charged species. We demonstrate that solute cavities, constructed with scaled atomic radii as described, permit one to calculate hydrolysis constants of acceptable accuracy. As a consequence, one is also able to estimate free hydration energies of U(IV) and Np(IV) in adequate agreement with empirical data. According to the model calculations, U(IV) is coordinated by eight to nine water molecules, while the preferred coordination number of Np(IV) is 8. For the highly charged ions under study, the modified solvation model simultaneously yields improved geometries, hydration energies, and hydrolysis constants.

A comprehensive molecular analysis of a simple aqueous complexing system-U(VI) acetate-selected to be independently investigated by various spectroscopic (vibrational, luminescence, X-ray absorption, and nuclear magnetic resonance spectroscopy) and quantum chemical methods was achieved by an international round-robin test (RRT). Twenty laboratories from six different countries with a focus on actinide or geochemical research participated and contributed to this scientific endeavor. The outcomes of this RRT were considered on two levels of complexity: first, within each technical discipline, conformities as well as discrepancies of the results and their sources were evaluated. The raw data from the different experimental approaches were found to be generally consistent. In particular, for complex setups such as accelerator-based X-ray absorption spectroscopy, the agreement between the raw data was high. By contrast, luminescence spectroscopic data turned out to be strongly related to the chosen acquisition parameters. Second, the potentials and limitations of coupling various spectroscopic and theoretical approaches for the comprehensive study of actinide molecular complexes were assessed. Previous spectroscopic data from the literature were revised and the benchmark data on the U(VI) acetate system provided an unambiguous molecular interpretation based on the correlation of spectroscopic and theoretical results. The multimethodologic approach and the conclusions drawn address not only important aspects of actinide spectroscopy but particularly general aspects of modern molecular analytical chemistry., Competing Interests: The authors declare no competing financial interest.

The Baltic Sea is a marginal sea characterized by stagnation periods of several years. Oxygen consumption in its deep waters leads to the buildup of sulfide from sulfate reduction. Some of the microorganisms responsible for these processes also transform reactive ionic mercury to neurotoxic methylmercury. Episodic inflows of oxygenated saline water from the North Sea temporally re-establish oxic life in deep waters of the Baltic Sea. Thus, this sea is an especially important region to better understand mercury species distributions in connection with variable redox conditions. Mercury species were measured on three Baltic Sea campaigns, during the preinflow, ongoing inflow, and subsiding inflow of water, respectively, to the central basin. The inflowing water caused the removal of total mercury by 600 nmol m -2 and of methylmercury by 214 nmol m -2 in the Gotland Deep, probably via attachment of the mercury compounds to sinking particles. It appears likely that the consequences of the oxygenation of Baltic Sea deep waters, which are the coprecipitation of mercury species and the resettlement of the oxic deep waters, could lead to the enhanced transfer of accumulated mercury and methylmercury to the planktonic food chain and finally to fish.

The complexation of Am(III) with formate in aqueous solution is studied as a function of the pH value using a combination of extended X-ray absorption fine structure (EXAFS) spectroscopy, iterative transformation factor analysis (ITFA), and quantum chemical calculations. The Am L III -edge EXAFS spectra are analyzed to determine the molecular structure (coordination numbers; Am-O and Am-C distances) of the formed Am(III)-formate species and to track the shift of the Am(III) speciation with increasing pH. The experimental data are compared to predictions from density functional calculations. The results indicate that formate binds to Am(III) in a monodentate fashion, in agreement with crystal structures of lanthanide formates. Furthermore, the investigations are complemented by thermodynamic speciation calculations to verify further the results obtained.

We report here structure-guided optimization of a novel series of NF-κB inducing kinase (NIK) inhibitors. Starting from a modestly potent, low molecular weight lead, activity was improved by designing a type 11/2 binding mode that accessed a back pocket past the methionine-471 gatekeeper. Divergent binding modes in NIK and PI3K were exploited to dampen PI3K inhibition while maintaining NIK inhibition within these series. Potent compounds were discovered that selectively inhibit the nuclear translocation of NF-κB2 (p52/REL-B) but not canonical NF-κB1 (REL-A/p50).

The spatial magnetic properties (through space NMR shieldings, TSNMRSs) of cyclopropane; of the heteroanalogous oxirane, thiirane, and aziridine; and of various substituted mono-, dis-, and tris-cyclic analogues have been computed by the GIAO perturbation method employing the nucleus independent chemical shift (NICS) concept and visualized as iso-chemical-shielding surfaces (ICSSs) of various size and direction. The TSNMRS values, thus obtained, can be employed to visualize the anisotropy (ring current) effect of the cyclopropane ring moiety. This approach has been employed to qualify and quantify substituent influences and contributions of appropriate ring heteroatoms O, NH, and S on the anisotropy (ring current) effect of three-membered ring moieties, and to assign the stereochemistry of mono-, bis-, and tris-cyclic structures containing cyclopropane as a structural element. Characteristic examples are included.

The scarce availability of nongenetically modified soybeans on the world market represents a growing problem for food manufacturers. Hence, in this study the effects of substituting soybean with sunflower lecithin were investigated with regard to chocolate production. The glycerophospholipid pattern of the different lecithin samples was investigated by high-performance thin-layer chromatography fluorescence detection (HPTLC-FLD) and by HPTLC-positive ion electrospray ionization mass spectrometry (ESI(+)-MS) via the TLC-MS Interface and by scanning HPTLC-matrix-assisted laser desorption ionization-time-of-flight mass spectrometry (MALDI-TOFMS). Especially, the contents of phosphatidylcholine (PC) and phosphatidylethanolamine (PE) were of interest due to the influencing effects of these two glycerophospholipids on the rheological parameters of chocolate production. The lecithin substitution led to only slight differences in the rheological parameters of milk and dark chocolate. Limits of detection (LODs) and limits of quantification (LOQs) of seven glycerophospholipids were studied for three detection modes. Mean LODs ranged from 8 to 40 mg/kg for HPTLC-FLD and, using a single-quadrupole MS, from 10 to 280 mg/kg for HPTLC-ESI(+)-MS as well as from 15 to 310 mg/kg for HPTLC-FLD-ESI(+)-MS recorded after derivatization with the primuline reagent.

Transition state discovery via application of string methods has been researched on two fronts. The first front involves development of a new string method, named the Searching String method, while the second one aims at estimating transition states from a discretized reaction path. The Searching String method has been benchmarked against a number of previously existing string methods and the Nudged Elastic Band method. The developed methods have led to a reduction in the number of gradient calls required to optimize a transition state, as compared to existing methods. The Searching String method reported here places new beads on a reaction pathway at the midpoint between existing beads, such that the resolution of the path discretization in the region containing the transition state grows exponentially with the number of beads. This approach leads to favorable convergence behavior and generates more accurate estimates of transition states from which convergence to the final transition states occurs more readily. Several techniques for generating improved estimates of transition states from a converged string or nudged elastic band have been developed and benchmarked on 13 chemical test cases. Optimization approaches for string methods, and pitfalls therein, are discussed.

Using Derjaguin's approximation, we have evaluated the interaction energy associated with van der Waals, electrostatic, depletion, and capillary forces between colloidal spheroids. If the interaction range between spheroids is distinctly smaller than the lengths of their principal axes, then simple pair potentials that depend on particle distance and orientation can be derived. Attractive interactions between adjacent spheroids favor their parallel alignment. Parallel spheroids can be arranged into a variety of densely packed configurations. All of these configurations turn out to have the same lattice energy. We discuss the implications of this degeneracy with respect to the stability of photonic crystals consisting of spheroids., (© 2011 American Chemical Society)

A simple mathematical model for the depletion force between two arbitrarily shaped large convex colloidal particles immersed in a suspension of small spherical particles is proposed. Using differential geometry, the interaction potential is expressed in terms of the mean and Gaussian curvature of the particle surfaces. The accuracy of theoretical results is tested by Monte Carlo simulations for parallel and nonparallel circular cylinders. The agreement between theoretical results and simulated data is very good if the density of the depletion agent is not too high.

We report a computational investigation of CO adsorption on small nickel clusters that contain single impurity atoms H, C, or O. At bare Ni 4 and clusters with H or O impurity, the most stable coordination of the probe molecule is on top of a Ni atom which interacts with the impurity. The CNi 4 cluster is an exception where 3-fold coordination of CO was determined to be more stable than that on top, however, by 4 kJ/mol only. Our results suggest that the heteroatoms X (X = H, C, O) affect only weakly the reactivity of the cluster with respect to CO; the binding energy of CO in the most stable complexes (CO)XNi 4 increases at most by 10% compared to the value for bare Ni 4, 194 kJ/mol. The impurity induces a small decrease of the CO infrared frequency shift for on-top coordinated CO, compared to Ni 4, because of partial oxidation of the metal moiety. A notable difference is predicted for clusters that contain a C impurity because of the different preferred coordination mode which results in a strong CO frequency red shift of approximately 300 cm (-1). The calculated characteristic CO frequency shifts may be helpful in identifying experimentally clusters with impurity atoms.

The adsorption of uranyl on two types of neutral (001) surfaces of kaolinite, tetrahedral Si(t) and octahedral Al(o), was studied by means of density functional periodic slab model calculations. Various types of model surface complexes, adsorbed at different sites, were optimized and adsorption energies were estimated. As expected, the Si(t) surface was found to be less reactive than the Al(o) surface. At the neutral Al(o) surface, only adsorption at protonated sites is calculated to be exothermic for inner- as well as outer-sphere adsorption complexes, with monodentate coordination being preferred. Adsorption energies as well as structural features of the adsorption complexes are mainly determined by the number of deprotonated surface hydroxyl groups involved. Outer-sphere complexes on both surfaces exhibit a shorter U-O bond to the aqua ligand of uranyl that is in direct contact with the surface than to the other aqua ligands. This splitting of the shell of equatorial U-O bonds is at variance with common expectations for outer-sphere surface complexes of uranyl.

We carried out relativistic density functional calculations to investigate systematically the effect of main group element impurities H, C, and O on a Pd4 cluster. We determined a bridging coordination for Pd4H as most stable, whereas several other local minima are energetically close. The interaction of C with Pd4 is strong enough to restructure the cluster, resulting in two Pd2 units bridged by 4-fold coordinated C, but other isomers are again almost degenerate. Nearly degenerate isomers of Pd4O exhibit 2- and 3-fold coordination of O. In the most stable structures, the binding energies of the impurities, 295 kJ/mol for Pd4H, 655 kJ/mol for Pd4C, and 367 kJ/mol for Pd4O, are large enough to allow bond breaking of common small molecules when they interact with an ensemble of Pd4 clusters. Interestingly, the noteworthy relativistic effect on the properties of Pd4 also affects the interaction with impurity atoms. Comparison with other metals reveals similarities with Ni4X and differences from Ir4H, Ir4C, and Pt4H.

With a gradient-corrected density functional method, we have studied computationally the influence of single impurity atoms on the structure, electronic, and magnetic properties of Ni5 clusters. The square-pyramidal isomer of bare Ni5 with six unpaired electrons was calculated 23 kJ/mol more stable than the trigonal bipyramid in its lowest-energy electronic configuration with four unpaired electrons. In a previous study on the cluster Ni4, we had obtained only one stable isomer with an O or an H impurity, but we located six minima for ONi5 and five minima for HNi5. In the most stable structures of HNi5, the H atom bridges a Ni-Ni edge at the base or the side of the square pyramid, similarly to the coordination of an H atom at the tetrahedral cluster Ni4. The most stable ONi5 isomers exhibit a trigonal bipyramidal structure of the Ni5 moiety, with the impurity coordinated at a facet, (micro3-O)Ni5, or at an apex edge, (micro-O)Ni5. We located four stable structures for a C impurity at a Ni5 cluster. As for CNi4, the most stable structure of the corresponding Ni5 complex comprises a four-coordinated C atom, (micro4-C)Ni5, and can be considered as insertion of the impurity into a Ni-Ni bond of the bare cluster. All structures with C and five with O impurity have four unpaired electrons, while the number of unpaired electrons in the clusters HNi5 varies between 3 and 7. As a rough trend, the ionization potentials and electron affinities of the clusters with impurity atoms decrease with the coordination number of the impurity. However, the position of the impurity and the shape of the metal moiety also affect the results. Coordination of an impurity atom leads to a partial oxidation of the metal atoms.

We studied uranium(VI) monocarboxylate complexes by a relativistic density functional method using simple carboxylic acids as ligands, i.e. [UO2(OOCR)]+ (R = H, CH3, CH2CH3). These complexes exist in aqueous solution and, for R = CH3 and CH2CH3, may also be considered as models of uranyl complexated by humic substances. We investigated mono- and bidentate coordination modes. Short-range solvent effects were accounted for explicitly via aqua ligands of the first hydration shell and long-range electrostatic interactions were described via a polarizable continuum model. The calculated results for the uranyl U=O bond, the bond to aqua ligands, and the averaged uranium distances to equatorial oxygen atoms, U-Oeq, agreed quite well with EXAFS-derived interatomic distances. However, the uranyl-carboxylate bond was calculated to be notably shorter than the experimentally determined value. Experimental differences between mono- and bidentate coordination, obtained mainly from crystal structures, were qualitatively reproduced for the U-C distance but not for the average bond length, U-Oeq. We discuss these discrepancies between calculated and experimental results in some detail and suggest changes in the coordination number rather than variations of the coordination geometry as the main source of the experimentally observed variation of the U-Oeq distance.

The six-valent uranyl and neptunyl complexes [An(VI)O2X4]n (An = U, Np; X = F, Cl, OH, n = -2; X = H2O, n = +2) have been studied within the framework of density functional theory. The relative stabilities of the cis and trans isomers, structural properties, charge distribution, and ligand binding energies have been determined using the modified Perdew-Burke-Ernzerhof functional at the all-electron scalar relativistic level. Uranyl and neptunyl complexes with different ligands have been compared in a systematic fashion, demonstrating close similarity of these actinides in oxidation state VI. In addition, the effect of an aqueous solution has been taken into account with the polarizable continuum model COSMO. Computed averaged ligand binding energies permit one to rationalize the observed different stabilities of the title species in aqueous media.

To validate the IMOMM (integrated molecular orbitals/molecular mechanics) method for ligand-stabilized transition metal clusters, we compare results of this combined quantum mechanical and molecular mechanical (QM/MM) approach, as implemented in the program ParaGauss (Kerdcharoen, T.; Birkenheuer, U.; Krüger, S.; Woiterski, A.; Rösch, N. Theor. Chem. Acc. 2003, 109, 285), to a full density functional (DF) treatment. For this purpose, we have chosen a model copper ethylthiolate cluster, Cu13(SCH2CH3)8 in D4h symmetry. The evaluation is based on 16 conformers of the cluster which exhibit single and bridging coordination of the ligands at the Cu13 cluster as well as various ligand orientations. For corresponding isomers, we obtained moderate deviations between QM and QM/MM results:  0.01-0.06 Å for pertinent bond lengths and up to ∼15° for bond angles. Ligand binding energies of the two approaches deviated less than 6 kcal/mol. The largest discrepancies between full DF and IMOMM results were found for isomers exhibiting short Cu-H and H-H contacts. We traced this back to the localization of different minima, reflecting the unequal performance of the DF and the force-field methods for nonbonding interactions. Thus, QM/MM results can be considered as more reliable because of the well-known limitations of standard exchange-correlation functionals for the description of nonbonding interactions for this class of systems.

We have studied the solvation of uranyl, UO(2)(2+), and the reduced species UO(OH)(2+) and U(OH)(2)(2+) systematically using three levels of approximation: direct application of a continuum model (M1); explicit quantum-chemical treatment of the first hydration sphere (M2); a combined quantum-chemical/continuum model approach (M3). We have optimized complexes with varying numbers of aquo ligands (n = 4-6) and compared their free energies of solvation. Models M1 and M2 have been found to recover the solvation energy only partially, underestimating it by approximately 100 kcal/mol or more. With our best model M3, the calculated hydration free energy Delta(h)G degrees of UO(2)(2+) is about -420 kcal/mol, which shifts to about -370 kcal/mol when corrected for the expected error of the model. This value agrees well with the experimentally determined interval, -437 kcal/mol < Delta(h)G degrees < -318 kcal/mol. Complexes with 5 and 6 aquo ligands have been found to be about equally favored with models M2 and M3. The same solvation models have been applied to a two-step reduction of UO(2)(2+) by water, previously theoretically studied in the gas phase. Our results show that the solvation contribution to the reaction free energy, about 60 kcal/mol, dominates the endoergicity of the reduction.

Iron ore sintering is an important source of "dioxins", polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs). This paper reports on attempts to identify materials, conditions, and mechanisms responsible for PCDD/F formation (i) by investigating salient properties of ores (viz., with respect to oxidation, condensation, and chlorination of model organics) and (ii) by mimicking the industrial process on a microscale with real-life materials. Principles of Design of Experiments (DOE) are employed. The reactivities of iron ores differ greatly. Limonite/goethite "soft" ore is a very active oxidation catalyst (e.g., for benzene and phenol), a property that may be useful in cleaning up crude sintering process offgases, whereas hematite/magnetite "hard" ore is not. The latter, however strongly promotes condensation of phenol to dibenzofuran. A newly built lab-microscale sintering facility could satisfactorily imitate the large-scale process, in part or as a whole. Results obtained with realistic feed mixtures point at dioxin formation in the sinter bed at levels significant enough to explain a major part of the outputs observed in the real-life process. With approximately 8 ppm (wt) of chloride added as NaCl, the PCDD/F output doubled, but with the same proportion of chlorine administered as C2Cl4, the dioxin output was over 2 orders of magnitude larger. The use of process reverts, etc. containing chlorinated organics should therefore be avoided. PCDD/F congener patterns are also reported and compared with those observed in practice.

The insertion of InBr into the Au-Br bond of [(Ph(3)P)AuBr] in tetrahydrofuran (thf) in the presence of [(CH(2)PPh(2))(2)] (dppe) leads to the formation of an orange complex [(dppe)(2)Au](+)[(dppe)(2)Au(3)In(3)Br(7)(thf)](-), 2. Analytical, spectroscopic, and X-ray structural investigations showed that this product is an anionic analogue of a neutral chloride complex [(dppe)(2)Au(3)In(3)Cl(6)(thf)(3)], 1, prepared recently. Both complexes have an Au(3)In(3) cluster core of approximate C(2)(v)() symmetry with one extremely short Au-Au bond [Au1-Au3 2.575(1) Å] as part of a quasi-linear array P1-Au1-Au3-P4, suggesting the presence of a bis(phosphine) complex of the neutral Au(2) molecule as part of the cluster. The third gold atom (Au2) is then assigned oxidation state +1. To gain deeper insight into the structure and bonding of this novel class of gold cluster compounds, regarding mainly the peculiar cluster geometry, the charge distribution, and the oxidation states, a series of scalar relativistic all-electron density functional (DF) calculations on model systems has been performed. As a model for 1, the neutral cluster {Au(3)(PH(3))(4)[InCl(2)(H(2)O)](3)} was studied. For the examination of the geometry of complexes 1 and 2, the cluster Au(3)(PH(3))(4)I(3) has been considered as a further simplified model, where iodine replaces the InX(2)(thf) units. Experimental and calculated cluster geometries agree satisfactorily, and the formal oxidation states of the gold atoms (0 for Au1 and Au3, +1 for Au2) could be confirmed, but for the In centers no interpretable differences of the Mulliken charges were found.

Relativistic and nonrelativistic electronic structure calculations were carried out on [(PR(3))(2)M](+)and [PR(3)MCl] (M = Ag, Au; R = H, Me) complexes using the all-electron linear combination of Gaussian-type orbitals density functional (LCGTO-DF) method. The calculated relativistic metal-ligand bond lengths show good agreement with experimental values. The relativistic contraction of the M-P bonds in [(PR(3))(2)M](+) is about 8 and 22 pm for M = Ag and Au, respectively, resulting in Au-P bonds that are about 10 pm shorter than the Ag-P bonds in these species, in good agreement with recent crystallographic results for the cations [(PMes(3))(2)M](+) (M = Ag, Au). The relativistic contraction of the Au-Cl bond in [PR(3)AuCl] is significantly less than that of the Au-P bond, and this explains the experimentally observed differential Au-X and Au-P bond length contractions from [PR(3)AgX] to [PR(3)AuX]. The calculated relativistic bond lengths for corresponding PH(3) and PMe(3) complexes are very similar, confirming a previous conclusion that PH(3) is a good model for structural properties of larger tertiary phosphine ligands. However, the bond lengths for the PMe(3) complexes are all slightly longer than those for the corresponding PH(3) complexes, whereas the M-P dissociation energies are 20-40% higher for the PMe(3) complexes. These findings provide computational support for the concept of "longer but stronger bonds", which was recently proposed on the basis of experimental studies of transition metal complexes involving various substituted phosphine ligands.