Search

The accuracy and the usefulness of density functional theory (DFT) and time-dependent density functional theory (TD-DFT) calculations for the theoretical study of Ln (La, Eu, Lu) complexes are investigated. The geometries calculated at the DFT level for [Ln(H2O)(sub n)L](super 3 +) complexes are successfully compared with crystallographic data.

Three different cathodic materials for the hydrogen evolution reaction (HER) consisting of Ru nanoparticles (NPs) supported onto a bare and two doped reduced graphene oxides (r-GO) have been studied. Ru NPs have been synthesized in situ by means of the organometallic approach in the presence of each reduced graphene support (bare (rGO), N-doped (NH 2 -rGO) and P-doped (P-rGO)). (HR)TEM, EDX, EA, ICP-OES, XPS, Raman and NMR techniques have been used to fully characterize the obtained rGO-supported Ru materials. These materials have been deposited onto a glassy carbon rotating disk electrode (GC-RDE) to assess their HER electrocatalytic activity at acidic pH. The results show that all three materials are stable under reductive conditions for at least 12 h, and that the heteroatom-doping of the graphene structure extremely increases the activity of the electrodes, especially for the case of Ru@P-rGO, where the overpotential at -10 mA·cm -2 decreases to only 2 mV. Realistic (based on experimental compositional data) modeling of the three rGO supports combined with DFT computational analysis of the electronic and electrocatalytic properties of the hybrid nanocatalysts allows attributing the observed electrocatalytic performances to a combination of interrelated factors such as the distance of the Ru atoms to the dopped rGO support and the hydride content at the Ru NP surface.

Ultrasmall gold nanoparticles (NPs) stabilized in networks by polymantane ligands (diamondoids) were successfully used as precatalysts for highly selective heterogeneous gold-catalyzed dimethyl allyl(propargyl)malonate cyclization to 5-membered conjugated diene. Such reaction usually suffers from selectivity issues with homogeneous catalysts. This control over selectivity further opened the way to one-pot cascade reaction, as illustrated by the 1,6-enyne cycloisomerization-Diels-Alder reaction of dimethyl allyl propargyl malonate with maleic anhydride. The ability to assemble nanoparticles with controllable sizes and shapes within networks concerns research in sensors, medical diagnostics, information storage, and catalysis applications. Herein, the control of the synthesis of sub-2-nm gold NPs is achieved by the formation of dense networks, which are assembled in a single step reaction by employing ditopic polymantanethiols. By using 1,1'-bisadamantane-3,3'-dithiol (BAd-SH) and diamantane-4,9-dithiol (DAd-SH), serving both as bulky surface stabilizers and short-sized linkers, we provide a simple method to form uniformly small gold NPs (1.3 ± 0.2 nm to 1.6 ± 0.3 nm) embedded in rigid frameworks. These NP arrays are organized alongside short interparticular distances ranging from 1.9 to 2.7 nm. The analysis of gold NP surfaces and their modification were achieved in joint experimental and theoretical studies, using notably XPS, NMR, and DFT modeling. Our experimental studies and DFT analyses highlighted the necessary oxidative surface reorganization of individual nanoparticles for an effective enyne cycloisomerization. The modifications at bulky stabilizing ligands allow surface steric decongestion for the alkyne moiety activation but also result in network alteration by overoxidation of sulfurs. Thus, sub-2-nm nanoparticles originating from networks building create convenient conditions for generating reactive Au(I) surface single-sites-in the absence of silver additives-useful for heterogeneous gold-catalyzed enyne cyclization. These nanocatalysts, which as such ease organic products separation, also provide a convenient access for building further polycyclic complexity, owing to their high reactivity and selectivity., Competing Interests: The authors declare no competing financial interest., (© 2021 The Authors. Published by American Chemical Society.)

Despite the intensive interest in thin gold nanowires for a variety of technologically important applications, key details of the mechanism of their formation and atomic-scale structure remain unknown. Here we synthesize highly uniform, very long, and ultrathin gold nanowires in a liquid-phase environment and study their nucleation and growth using in situ high-energy synchrotron X-ray diffraction. By controlling the type of solvents, reducing agents, and gold precursor concentration, it is shown that the nucleation and growth of gold nanowires involve the emergence and self-assembly of transient linear gold complexes, respectively. In sharp contrast with the face-centered-cubic bulk gold, the evolved nanowires are found to possess a tetrahedrally close packed structure incorporating distorted icosahedra and larger size coordination polyhedra of the type observed with the room-temperature phase of bulk manganese. We relate the complexes to synergistic effects between the selected precursor and reducing agents that become appreciable over a narrow range of their molar ratios. We attribute the unusual structural state of gold nanowires to geometrical frustration effects arising from the conflicting tendencies of assemblies of metal atoms to evolve toward attaining high atomic packing density while keeping the atomic-level stresses low, ultimately favoring the growth of cylindrical nanowires with a well-defined diameter and atomically smooth surface. Our work provides a roadmap for comprehensive characterization and, hence, better understanding of 1D metallic nanostructures with an unusual atomic arrangement and may have important implications for their synthesis and performance in practical applications.

Gold nanowires with a mean diameter of 1.7 nm were synthesized by reduction of HAuCl 4 in a solution of oleylamine (OY) in hexane. A bilayer of oleylammonium chloride/oleylamine at the surface of the raw nanowires was evidenced by NMR and diffusion ordered spectroscopy (DOSY) experiments. After washing a monolayer of oleylammonium chloride remained at the surface of the nanowires. The oleylammonium chloride layer could be progressively replaced by a phosphine shell as evidenced with NMR and DOSY experiments, which are in good agreement with the adsorption energies given by density functional theory calculations. The nanowires crystallize into hexagonal superlattices with a lattice parameter that can be tailored depending on the ligand shell. Small-angle X-ray scattering showed the following lattice parameters: Au@OY + Cl - (OY) (a = 7.2 nm) > Au@TOPO/OY (a = 6.6 nm) > Au@ OY + Cl - (a = 4.1 nm) > Au@TOP (a = 3.75 nm). This is one of a few examples of surface modification of ultrathin nanowires that does not alter their morphology. Moreover, the nanowires coated with phosphines exhibited long time stability (at the opposite of other ligands like thiols) opening the way to more complex functionalization.

Describing and understanding surface chemistry on the atomic scale is of primary importance in predicting and rationalize nanoparticle morphology as well as their physical and chemical properties. Here we present the results of comprehensive density functional theory studies on the adsorption of several small organic species, representing the major species (H2, Cl2, HCl, NH3, NH4Cl, and CH3COOH), present in the reaction medium during colloidal iron nanoparticle synthesis on various low-index iron surface models, namely, (100), (110), (111), (211), and (310). All of the tested ligands strongly interact with the proposed surfaces. Surface energies are calculated and ligand effects on the morphologies are presented, including temperature effects, based on a thermodynamic approach combined with the Wulff construction scheme. The importance of taking into account vibrational contributions during the calculation of surface energies after adsorption is clearly demonstrated. More importantly, we find that thermodynamic ligand effects can be ruled out as the unique driving force in the formation of recently experimentally observed iron cubic nanoparticles.

The experimental design of improved nanocatalysts is usually based on shape control and is surface-ligand dependent. First-principle calculations can guide their design, both in terms of activity and selectivity, provided that theoretical descriptors can be defined and used in a prescreening process. As a consequence of the Sabatier principle and of the Brønsted-Evans-Polanyi relationship, an important prerequisite before optimizing the catalytic properties of nanoparticles is the knowledge of the selective adsorption strengths of reactants at their surface. We report here adsorption energies of X (H, CH3) and L (PH3, CO) ligands at the surface of bare ruthenium nanoclusters Run (n = 55 and 147) calculated at the DFT level. Their dependence on the topology of the adsorption sites as well as on the size and shape of the nanoparticles (NPs) is rationalized with local descriptors derived from the so-called d-band center model. Defining the descriptors involves the determination of the energy of effective d atomic orbitals for each surface atom. Such a ligand field theory-like model is in close relation with frontier molecular orbital theory, a cornerstone of rational chemical synthesis. The descriptors are depicted as color maps which straightforwardly yield possible reactivity spots. The adsorption map of a large spherical hcp cluster (Ru288) nicely confirms the remarkable activity of steps, the so-called B5 sites. The predictive character of this conceptual DFT approach should apply to other transition metal NPs and it could be a useful guide to the design of efficient nanocatalysts bearing sites with a specific activity.

The (2)H quadrupolar interaction is a sensitive tool for the characterization of deuterium-metal binding states. In the present study, experimental solid-state (2)H MAS NMR techniques are used in the investigations of two ruthenium clusters, D(4)Ru(4)(CO)(12) (1) and D(2)Ru(6)(CO)(18) (2), which serve as model compounds for typical two-fold, three-fold, and octahedral coordination sites on metal surfaces. By line-shape analysis of the (2)H MAS NMR measurements of sample 1, a quadrupolar coupling constant of 67 +/- 1 kHz, an asymmetry parameter of 0.67 +/- 0.1, and an isotropic chemical shift of -17.4 ppm are obtained. In addition to the neutral complex, sample 2 includes two ionic clusters, identified as anionic [DRu(6)(CO)(18)](-) (2(-)) and cationic [D(3)Ru(6)(CO)(18)](+) (2(+)). By virtue of the very weak quadrupolar interaction (<2 kHz) and the strong low-field shift (+16.8 ppm) of 2(-), it is shown that the deuteron is located in the symmetry center of the octahedron spanned by the six ruthenium atoms. For the cationic 2(+), the quadrupolar interaction is similar to that of the neutral 2. Quantum chemical DFT calculations at different model structures for these ruthenium clusters were arranged in order to help in the interpretation of the experimental results. It is shown that the (2)H nuclear quadrupolar interaction is a sensitive tool for distinguishing the binding state of the deuterons to the transition metal. Combining the data from the polynuclear complexes with the data from mononuclear complexes, a molecular ruler for quadrupolar interactions is created. This ruler now permits the solid-state NMR spectroscopic characterization of deuterium adsorbed on the surfaces of catalytically active metal nanoparticles.

Grafting catalysts on a surface leads to heterogeneous catalysts with well-defined active sites. However, the grafting mode of a lanthanum complex onto silica remains unknown. To shed light on this grafting reaction, different studies have been achieved in the framework of density functional theory. The silica substrate hydroxylated at 700 degrees C has been simulated both by molecular and periodic models. The created molecular models are in agreement with the rigidity of the ligand, the surface density of silanol groups, and the different spectroscopic data of a silica surface partially dehydroxylated at 700 degrees C. Two possible models of surface have henceforth been considered: the first one with one isolated silanol and the second one with two vicinal silanols linked by a siloxane bridge. The thermodynamics of a grafting reaction of lanthanum catalysts on these models has also been investigated. This reaction leads to thermodynamically stable structures that reveal different types of grafting: monografted, bigrafted, or bigrafted after breaking of a Si-O-Si bridge. Similarly to experimental approaches, coordination of triphenylphosphine oxide (O=PPh(3)) has also been considered as a probe of the grafting mode. A good agreement between the theoretical and the experimental spectroscopic values has systematically been found, but none of the grafting modes seem to be more relevant. Accordingly, it is necessary to consider in subsequent studies that all grafting modes coexist, increasing the difficulty to theoretically investigate multistep reactions.

To account for the scarcity of cis peptide bonds in proteins, especially in nonproline (or secondary amide) cases, a steric-clash argument is often put forward, in a scheme where the R lateral chains are facing parallel one another, and the backbone is kept in an "all- trans"-like arrangement. Although such a steric conflict can be partly relieved through proper adjustment of the backbone dihedral angles, one can try to estimate its associated energy cost. To this end, quantum-chemistry approaches using a differential-torsion protocol and bond-separation-energy analyses are applied to N-ethyl propionamide CH3-CH2-CO-NH-CH2-CH3, regarded as a model capable of exhibiting C beta...C beta interaction as in alanine succession. The calculations provide an increment of 9 kcal/mol, quite close to that obtained in the nearly isostere (gsg) rotamer of n-hexane (10 kcal/mol), suggesting the local effects induced by methyl-methyl contact are similar in both cases. Analogous treatments on larger radicals as encountered in leucine or phenylalanine dimers do not change this increment much, which therefore defines the basic reference per-plaque quota to be overcome along all- cis chains. Explicit modeling indicated it can be reduced by up to a factor of 4.

A trinuclear rare-earth metal hydride complex was synthesized from the dialkyl complex supported by a monoanionic [NNNN] macrocycle and shown to catalyze the hydrosilylation of olefins efficiently.

The possibility of all-cis open-chain polypeptides is rarely addressed, owing to three main reasons, namely, (i) the extreme scarcity of cis peptide bonds in naturally occurring proteins and peptides, (ii) the lesser thermodynamic stability (by about 2.5 kcal/mol) of cis amide bonds with respect to their trans counterparts, and (iii) widely held preconceptions about the so-called "steric clash" between lateral chains borne by two successive alpha carbons. Quantum-chemistry calculations performed on alanine tridecamers show how the latter constraints can be efficiently relieved through proper phi/psi adjustments along the backbone, leading to several helical arrangements--presumably the only permitted regular structures. Four more-or-less regular helices were thus characterized, one of them, a superhelix, exhibiting intramolecular hydrogen bonds. Understanding and anticipating all-cis open-chain structures not only make use of the classical Ramachandran maps at each C alpha i, relating to E = f(phi i,psi i), but also require the profile of a new kind of conformational dependence, the plaque maps, relating to E = f(phi i,psi i-1). The obvious coupling between two such maps enforces conformational dependence between two consecutive C alpha's, somewhat questioning in this context the customary "local effects", and presumably reducing the whole chain plasticity. Whereas cis thermodynamic penalty cannot be abolished locally, energy clues indicate that assembling cis-prepared building units is an exothermic process. Besides, once built up, the all-cis backbone should be difficult to unlock, thus affording reasonable kinetic stability.

Amide bonds -NH-CO- preferentially exist in trans conformations, the cis conformation being thermodynamically unfavored with respect to the trans by about 2 kcal/mol. Yet, the main reason most proteins or peptides cannot be made from cis-peptide plaques only lies in that connecting them into open chains appears to be sterically impracticable. It is possible, however, to build all-cis cyclic peptides in which all cis-plaques are efficiently locked. The present work examines, through quantum calculations, the structural and energetic issues associated with these peculiar arrangements. Systematic exploration at DFT-B3LYP level of the potential-energy surfaces for all-cis cyclopolyglycines cG(n)(c) (n = 2-10,15), and to a lesser extent, for all-cis cyclopolyalanines and all-cis cyclopolyphenylalanines confirms that all these structures are true minima. Optimal ring size occurs around eight peptide units, resulting in planar cG7(c), cG8(c), and cG9(c). In smaller systems, the ring strain is relieved through nonplanar cup-like distortions, particularly in cG6(c). From 10 peptide units and beyond, the ring framework distorts into a saddle-edge shape. These molecules disclose some molecular flexibility, as combinatorial tilting of the plaques may give sets of minima close in energy. Indexes based on isodesmic reactions are used to estimate the energy for joining all-cis or all-trans plaques into cyclic peptides. One of them, the mean plaque-junction energy (MPJE) suggests that within sensible sizes from six peptide units and beyond, all-cis plaque association is almost equally favorable as all-trans one. The frame of radiating cis-amide bonds can be considered as defining a new kind of peptidic material, endowed with specific self-assembling properties.

The accuracy and the usefulness of density functional theory (DFT) and time-dependent density functional theory (TD-DFT) calculations for the theoretical study of Ln (La, Eu, Lu) complexes have been investigated. The geometries calculated at the DFT level for [Ln(H2O)nL]3+ complexes have been successfully compared with crystallographic data. TD-DFT is able to offer valuable insights into VUV spectra of lanthanide complexes. However, the results obtained on the largest ligand (i.e., 2,4,6-tri-(pyridin-2-yl)-1,3,5-triazine (Tptz)) have to be considered as a failure of TD-DFT.

Using the Effective Group Potentials (EGP) method, optimal geometries, harmonic vibrational frequencies, and relative energies of different sets of metal complexes are calculated. All of the systems under consideration contain the cyclopentadienyl (Cp) ligand. They are as follows: (i). Group V metal Atom complexes showing one Cp ligand, (ii). a tetrameric Al-Cp compound with four Cp ligands, (iii). homometallic lutetium hydrides containing six cyclopentadienyl rings. Various electron correlation treatments have been carried out. All of the results compare very satisfactorily with available experimental data and with all-electron ab initio calculations performed for this work or published in the literature. Furthermore, the performance of the EGP method was tested on a rather large complex for which experimental evidence exists, but no all-electron calculation has been reported so far.

Recent progress on atomic and chemical group effective potentials is presented. The reviewed effective potentials follow a shape-consistent extraction technique from ab initio data, within a scalar relativistic approximation. Two types of averaged relativistic effective core potentials are considered: the correlated ones where a part of the correlation energy is included in the effective potential, and the polarized ones for which only the core polarization effects are taken into account. In addition spin-orbit polarized pseudopotentials have been extracted, and the effects of the core polarization are tested on the atomic spectroscopy of iodine. Finally a very recent chemical group effective methodology is presented, reducing the number of both electrons and nuclei explicitly treated. Chemical transferability is investigated, and test calculations on a cyclopentadienyl effective group potential are presented.