9 results on '"Patel SD"'
Search Results
2. Palladium-Catalyzed Chelation-Assisted Aldehyde C-H Bond Activation of Quinoline-8-carbaldehydes: Synthesis of Amides from Aldehydes with Anilines and Other Amines.
- Author
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Thakur DG, Rathod NB, Patel SD, Patel DM, Patel RN, Sonawane MA, and Ghosh SC
- Abstract
A palladium-catalyzed chelation-assisted direct aldehyde C-H bond amidation of quinoline-8-carbaldehydes with an amine was developed under mild reaction conditions. A wide range of amides were obtained in good to excellent yields from aldehyde with a variety of aniline derivatives and aliphatic amines. Our methodology was successfully applied to synthesize known DNA intercalating agents and can be easily scaled up to a gram scale.
- Published
- 2024
- Full Text
- View/download PDF
3. 5-HT2ARs Mediate Therapeutic Behavioral Effects of Psychedelic Tryptamines.
- Author
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Cameron LP, Patel SD, Vargas MV, Barragan EV, Saeger HN, Warren HT, Chow WL, Gray JA, and Olson DE
- Subjects
- Animals, Humans, Tryptamines pharmacology, Rodentia, Hallucinogens pharmacology, Hallucinogens therapeutic use
- Abstract
Psychedelic compounds have displayed antidepressant potential in both humans and rodents. Despite their promise, psychedelics can induce undesired effects that pose safety concerns and limit their clinical scalability. The rational development of optimized psychedelic-related medicines will require a full mechanistic understanding of how these molecules produce therapeutic effects. While the hallucinogenic properties of psychedelics are generally attributed to activation of serotonin 2A receptors (5-HT2ARs), it is currently unclear if these receptors also mediate their antidepressant effects as several nonhallucinogenic analogues of psychedelics with antidepressant-like properties have been developed. Moreover, many psychedelics exhibit promiscuous pharmacology, making it challenging to identify their primary therapeutic target(s). Here, we use a combination of pharmacological and genetic tools to demonstrate that activation of 5-HT2A receptors is essential for tryptamine-based psychedelics to produce antidepressant-like effects in rodents. Our results suggest that psychedelic tryptamines can induce hallucinogenic and therapeutic effects through activation of the same receptor.
- Published
- 2023
- Full Text
- View/download PDF
4. Cavity-Enhanced 2D Material Quantum Emitters Deterministically Integrated with Silicon Nitride Microresonators.
- Author
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Parto K, Azzam SI, Lewis N, Patel SD, Umezawa S, Watanabe K, Taniguchi T, and Moody G
- Abstract
Optically active defects in 2D materials, such as hexagonal boron nitride (hBN) and transition-metal dichalcogenides (TMDs), are an attractive class of single-photon emitters with high brightness, operation up to room temperature, site-specific engineering of emitter arrays with strain and irradiation techniques, and tunability with external electric fields. In this work, we demonstrate a novel approach to precisely align and embed hBN and TMDs within background-free silicon nitride microring resonators. Through the Purcell effect, high-purity hBN emitters exhibit a cavity-enhanced spectral coupling efficiency of up to 46% at room temperature, exceeding the theoretical limit (up to 40%) for cavity-free waveguide-emitter coupling and demonstrating nearly a 1 order of magnitude improvement over previous work. The devices are fabricated with a CMOS-compatible process and exhibit no degradation of the 2D material optical properties, robustness to thermal annealing, and 100 nm positioning accuracy of quantum emitters within single-mode waveguides, opening a path for scalable quantum photonic chips with on-demand single-photon sources.
- Published
- 2022
- Full Text
- View/download PDF
5. A Nanometric Probe of the Local Proton Concentration in Microtubule-Based Biophysical Systems.
- Author
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Kalra AP, Eakins BB, Vagin SI, Wang H, Patel SD, Winter P, Aminpour M, Lewis JD, Rezania V, Shankar K, Scholes GD, Tuszynski JA, Rieger B, and Meldrum A
- Subjects
- Biophysics, Cytoplasm physiology, Hydrogen-Ion Concentration, Microtubules metabolism, Protons
- Abstract
We show a double-functional fluorescence sensing paradigm that can retrieve nanometric pH information on biological structures. We use this method to measure the extent of protonic condensation around microtubules, which are protein polymers that play many roles crucial to cell function. While microtubules are believed to have a profound impact on the local cytoplasmic pH, this has been hard to show experimentally due to the limitations of conventional sensing techniques. We show that subtle changes in the local electrochemical surroundings cause a double-functional sensor to transform its spectrum, thus allowing a direct measurement of the protonic concentration at the microtubule surface. Microtubules concentrate protons by as much as one unit on the pH scale, indicating a charge storage role within the cell via the localized ionic condensation. These results confirm the bioelectrical significance of microtubules and reveal a sensing concept that can deliver localized biochemical information on intracellular structures.
- Published
- 2022
- Full Text
- View/download PDF
6. All Wired Up: An Exploration of the Electrical Properties of Microtubules and Tubulin.
- Author
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Kalra AP, Eakins BB, Patel SD, Ciniero G, Rezania V, Shankar K, and Tuszynski JA
- Abstract
Microtubules are hollow, cylindrical polymers of the protein α, β tubulin, that interact mechanochemically with a variety of macromolecules. Due to their mechanically robust nature, microtubules have gained attention as tracks for precisely directed transport of nanomaterials within lab-on-a-chip devices. Primarily due to the unusually negative tail-like C-termini of tubulin, recent work demonstrates that these biopolymers are also involved in a broad spectrum of intracellular electrical signaling. Microtubules and their electrostatic properties are discussed in this Review, followed by an evaluation of how these biopolymers respond mechanically to electrical stimuli, through microtubule migration, electrorotation and C-termini conformation changes. Literature focusing on how microtubules act as nanowires capable of intracellular ionic transport, charge storage, and ionic signal amplification is reviewed, illustrating how these biopolymers attenuate ionic movement in response to electrical stimuli. The Review ends with a discussion on the important questions, challenges, and future opportunities for intracellular microtubule-based electrical signaling.
- Published
- 2020
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- View/download PDF
7. Self-Assembly of a Dentinogenic Peptide Hydrogel.
- Author
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Nguyen PK, Gao W, Patel SD, Siddiqui Z, Weiner S, Shimizu E, Sarkar B, and Kumar VA
- Abstract
Current standard of care for treating infected dental pulp, root canal therapy, retains the physical properties of the tooth to a large extent, but does not aim to rejuvenate the pulp tissue. Tissue-engineered acellular biomimetic hydrogels have great potential to facilitate the regeneration of the tissue through the recruitment of autologous stem cells. We propose the use of a dentinogenic peptide that self-assembles into β-sheet-based nanofibers that constitute a biodegradable and injectable hydrogel for support of dental pulp stem cells. The peptide backbone contains a β-sheet-forming segment and a matrix extracellular phosphoglycoprotein mimic sequence at the C-terminus. The high epitope presentation of the functional moiety in the self-assembled nanofibers may enable recapitulation of a functional niche for the survival and proliferation of autologous cells. We elucidated the hierarchical self-assembly of the peptide through biophysical techniques, including scanning electron microscopy and atomic force microscopy. The material property of the self-assembled hydrogel was probed though oscillatory rheometry, demonstrating its thixotropic nature. We also demonstrate the cytocompatibility of the hydrogel with respect to fibroblasts and dental pulp stem cells. The self-assembled peptide platform holds promise for guided dentinogenesis and it can be tailored to a variety of applications in soft tissue engineering and translational medicine in the future., Competing Interests: The authors declare no competing financial interest.
- Published
- 2018
- Full Text
- View/download PDF
8. Inhibition of human telomerase activity by an engineered zinc finger protein that binds G-quadruplexes.
- Author
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Patel SD, Isalan M, Gavory G, Ladame S, Choo Y, and Balasubramanian S
- Subjects
- DNA Polymerase I chemistry, DNA-Binding Proteins chemistry, DNA-Binding Proteins genetics, Enzyme Activation, G-Quadruplexes, Humans, Protein Binding, Protein Synthesis Inhibitors chemistry, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins metabolism, Telomerase biosynthesis, Telomere enzymology, Templates, Genetic, DNA metabolism, DNA-Binding Proteins metabolism, Nucleic Acid Conformation, Protein Engineering methods, Telomerase antagonists & inhibitors, Telomerase metabolism, Zinc Fingers genetics
- Abstract
The G-quadruplex nucleic acid structural motif is a target for designing molecules that could potentially modulate telomere length or have anticancer properties. We have recently described an engineered zinc finger protein (Gq1) that binds with specificity to the intramolecular G-quadruplex formed by the human telomeric sequence 5'-(GGTTAG)(5)-3' (Isalan et al. (2001) Biochemistry 40, 830-836). Here, we report that Gq1 is able to arrest the action of a DNA polymerase on a template-containing telomeric sequence. Inhibition occurs in a concentration-dependent manner, probably by forming a stabilized G-quadruplex.protein complex. Furthermore, Gq1 inhibits the apparent activity of the enzyme telomerase in vitro, with an IC(50) value of 74.3 +/- 11.1 nM. Possible molecular mechanisms of inhibition are discussed, together with the potential for using engineered zinc fingers to interfere with the cellular processes associated with telomere function.
- Published
- 2004
- Full Text
- View/download PDF
9. Selection of zinc fingers that bind single-stranded telomeric DNA in the G-quadruplex conformation.
- Author
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Isalan M, Patel SD, Balasubramanian S, and Choo Y
- Subjects
- Amino Acid Sequence, Coliphages genetics, Coliphages metabolism, Combinatorial Chemistry Techniques, DNA metabolism, DNA, Single-Stranded metabolism, DNA-Binding Proteins metabolism, Electrophoresis, Polyacrylamide Gel, G-Quadruplexes, Humans, Molecular Sequence Data, Peptide Library, Peptides chemical synthesis, Peptides metabolism, Protein Binding, Telomere metabolism, DNA chemistry, DNA, Single-Stranded chemistry, DNA-Binding Proteins chemistry, Guanine chemistry, Nucleic Acid Conformation, Telomere chemistry, Zinc Fingers
- Abstract
There is considerable interest in molecules that bind to telomeric DNA sequences and G-quadruplexes with specificity. Such molecules would be useful to test hypotheses for telomere length regulation, and may have therapeutic potential. The versatility and modular nature of the zinc finger motif makes it an ideal candidate for engineering G-quadruplex-binding proteins. Phage display technology has previously been widely used to screen libraries of zinc fingers for binding to novel duplex DNA sequences. In this study, a three-finger library has been screened for clones that bind to an oligonucleotide containing the human telomeric repeat sequence folded in the G-quadruplex conformation. The selected clones show a strong amino acid consensus, suggesting analogous modes of binding. Binding was found to be both sequence dependent and structure specific. This is the first example of an engineered protein that binds to G-quadruplex DNA, and represents a new type of binding interaction for a zinc finger protein.
- Published
- 2001
- Full Text
- View/download PDF
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