6 results on '"Depsides metabolism"'
Search Results
2. Structure of the SARS-CoV-2 Nsp1/5'-Untranslated Region Complex and Implications for Potential Therapeutic Targets, a Vaccine, and Virulence.
- Author
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Vankadari N, Jeyasankar NN, and Lopes WJ
- Subjects
- COVID-19 Vaccines, Depsides chemistry, Depsides metabolism, Glycyrrhizic Acid chemistry, Glycyrrhizic Acid metabolism, Lactones chemistry, Lactones metabolism, Molecular Dynamics Simulation, Pregnatrienes chemistry, Pregnatrienes metabolism, Protein Binding drug effects, RNA, Viral chemistry, Ribosome Subunits, Small, Eukaryotic chemistry, Ribosome Subunits, Small, Eukaryotic metabolism, SARS-CoV-2 pathogenicity, Salicylates chemistry, Salicylates metabolism, Viral Nonstructural Proteins chemistry, Virulence, 5' Untranslated Regions, RNA, Viral metabolism, SARS-CoV-2 chemistry, Viral Nonstructural Proteins metabolism
- Abstract
SARS-CoV-2 is the cause of the ongoing Coronavirus disease 19 (COVID-19) pandemic around the world causing pneumonia and lower respiratory tract infections. In understanding the SARS-CoV-2 pathogenicity and mechanism of action, it is essential to depict the full repertoire of expressed viral proteins. The recent biological studies have highlighted the leader protein Nsp1 of SARS-CoV-2 importance in shutting down the host protein production. Besides, it still enigmatic how Nsp1 regulates for translation. Here we report the novel structure of Nsp1 from SARS-CoV-2 in complex with the SL1 region of 5'UTR of SARS-CoV-2, and its factual interaction is corroborated with enzyme kinetics and experimental binding affinity studies. The studies also address how leader protein Nsp1 of SARS-CoV-2 recognizes its self RNA toward translational regulation by further recruitment of the 40S ribosome. With the aid of molecular dynamics and simulations, we also demonstrated the real-time stability and functional dynamics of the Nsp1/SL1 complex. The studies also report the potential inhibitors and their mode of action to block viral protein/RNA complex formation. This enhance our understanding of the mechanism of the first viral protein Nsp1 synthesized in the human cell to regulate the translation of self and host. Understanding the structure and mechanism of SARS-CoV-2 Nsp1 and its interplay with the viral RNA and ribosome will open the arena for exploring the development of live attenuated vaccines and effective therapeutic targets for this disease.
- Published
- 2020
- Full Text
- View/download PDF
3. Metabolic Engineering of Saccharomyces cerevisiae for Rosmarinic Acid Production.
- Author
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Babaei M, Borja Zamfir GM, Chen X, Christensen HB, Kristensen M, Nielsen J, and Borodina I
- Subjects
- Cytochrome P-450 Enzyme System genetics, Cytochrome P-450 Enzyme System metabolism, Escherichia coli Proteins genetics, Escherichia coli Proteins metabolism, Plant Proteins genetics, Plant Proteins metabolism, Plasmids genetics, Plasmids metabolism, Saccharomyces cerevisiae chemistry, Tyrosine Transaminase genetics, Tyrosine Transaminase metabolism, Rosmarinic Acid, Cinnamates metabolism, Depsides metabolism, Metabolic Engineering, Saccharomyces cerevisiae metabolism
- Abstract
Rosmarinic acid is a hydroxycinnamic acid ester commonly found in the Boraginaceae and Lamiaceae plant families. It exhibits various biological activities, including antioxidant, anti-inflammatory, antibacterial, antiallergic, and antiviral properties. Rosmarinic acid is used as a food and cosmetic ingredient, and several pharmaceutical applications have been suggested as well. Rosmarinic acid is currently produced by extraction from plants or chemical synthesis; however, due to limited availability of the plant sources and the complexity of the chemical synthesis method, there is an increasing interest in producing this compound by microbial fermentation. In this study, we aimed to produce rosmarinic acid by engineered baker's yeast Saccharomyces cerevisiae . Multiple biosynthetic pathway variants, carrying only plant genes or a combination of plant and Escherichia coli genes, were implemented using a full factorial design of experiment. Through analysis of variances, the effect of each enzyme variant (factors), together with possible interactions between these factors, was assessed. The best pathway variant produced 2.95 ± 0.08 mg/L rosmarinic acid in mineral medium with glucose as the sole carbon source. Increasing the copy number of rosmarinic acid biosynthetic genes increased the titer to 5.93 ± 0.06 mg/L. The study shows the feasibility of producing rosmarinic acid by yeast fermentation.
- Published
- 2020
- Full Text
- View/download PDF
4. Inhibition of Human UGT1A1-Mediated Bilirubin Glucuronidation by Polyphenolic Acids Impact Safety of Popular Salvianolic Acid A/B-Containing Drugs and Herbal Products.
- Author
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Ma G, Zhang Y, Chen W, Tang Z, Xin X, Yang P, Liu X, Cai W, and Hu M
- Subjects
- Benzaldehydes metabolism, Bilirubin metabolism, Catechols metabolism, Cinnamates metabolism, Depsides metabolism, Humans, Kinetics, Microsomes, Liver metabolism, Salvia miltiorrhiza chemistry, Rosmarinic Acid, Benzofurans metabolism, Bilirubin analogs & derivatives, Caffeic Acids metabolism, Glucuronosyltransferase metabolism, Lactates metabolism, Polyphenols metabolism
- Abstract
Bilirubin-related adverse reactions (ADR, e.g., jaundice and hyperbilirubinemia) induced by herbs rich in certain polyphenolic acids are widely reported. However, the causes and the mechanisms underlying these ADR are not well understood. The purpose of this article is to determine the mechanism by which certain polyphenolic acids inhibit UGT1A1-mediated bilirubin glucuronidation, leading to jaundice or hyperbilirubinemia. We investigated in vitro inhibitory effects on bilirubin glucuronidation of salvianolic acid A (SAA), salvianolic acid B (SAB), danshensu (DSS), protocatechuic aldehyde (PA), and rosmarinic acid (RA), as well as two Salvia miltiorrhiza injections (DSI and CDI) rich in polyphenolic acids. The results showed that average formation rates of three bilirubin glucuronides displayed a significant difference (p < 0.05) and the formation of monoglucuronide was favored regardless if an inhibitor was present or not. SAA, SAB, DSI, and CDI, but not DSS, PA, and RA, significantly inhibited human UGT1A1-mediated bilirubin glucuronidation via a mixed-type inhibitory mechanism. Average IC
50 values of SAA, SAB, DSI, and CDI-mediated inhibition of bilirubin glucuronidation were bilirubin concentration-dependent, and their values (against total bilirubin glucuronidation) were in the range 0.44 ± 0.02 to 0.86 ± 0.04 μg/mL (for SAA), 4.22 ± 0.30 to 12.50 ± 0.93 μg/mL (for SAB), 9.29 ± 0.76 to 18.82 ± 0.63 μg/mL (for DSI), and 9.18 ± 2.00 to 22.36 ± 1.39 μg/mL (for CDI), respectively. In conclusion, SAA and its analog SAB are the main ingredients responsible for inhibition of bilirubin glucuronidation by DSI and CDI, whose use is associated with many high bilirubin-related ADR.- Published
- 2017
- Full Text
- View/download PDF
5. Hydrolysis of rosmarinic acid from rosemary extract with esterases and Lactobacillus johnsonii in vitro and in a gastrointestinal model.
- Author
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Bel-Rhlid R, Crespy V, Pagé-Zoerkler N, Nagy K, Raab T, and Hansen CE
- Subjects
- Animals, Aspergillus enzymology, Carboxylic Ester Hydrolases metabolism, Lactobacillus enzymology, Models, Biological, Plant Extracts chemistry, Rosmarinic Acid, Cinnamates metabolism, Depsides metabolism, Esterases metabolism, Gastrointestinal Tract enzymology, Gastrointestinal Tract microbiology, Lactobacillus metabolism, Rosmarinus chemistry
- Abstract
Rosmarinic acid (RA) was identified as one of the main components of rosemary extracts and has been ascribed to a number of health benefits. Several studies suggested that after ingestion, RA is metabolized by gut microflora into caffeic acid and derivatives. However, only limited information on the microorganisms and enzymes involved in this biotransformation is available. In this study, we investigated the hydrolysis of RA from rosemary extract with enzymes and a probiotic bacterium Lactobacillus johnsonii NCC 533. Chlorogenate esterase from Aspergillus japonicus (0.02 U/mg) hydrolyzed 90% of RA (5 mg/mL) after 2 h at pH 7.0 and 40 degrees C. Complete hydrolysis of RA (5 mg/mL) was achieved with a preparation of L. johnsonii (25 mg/mL, 3.3 E9 cfu/g) after 2 h of incubation at pH 7.0 and 37 degrees C. No hydrolysis of RA was observed after the passage of rosemary extract through the gastrointestinal tract model (GI model). Thus, RA is hydrolyzed neither chemically under the conditions of the GI model (temperature, pH, and bile salts) nor by secreted enzymatic activity (lipase and pancreatic enzymes). The addition of L. johnsonii cells to rosemary extract in the GI model resulted in substantial hydrolysis of RA (up to 99%).
- Published
- 2009
- Full Text
- View/download PDF
6. HPLC analysis of rosmarinic acid in feed enriched with aerial parts of Prunella vulgaris and its metabolites in pig plasma using dual-channel coulometric detection.
- Author
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Jirovský D, Kosina P, Myslínová M, Stýskala J, Ulrichová J, and Simánek V
- Subjects
- Animals, Cinnamates blood, Cinnamates metabolism, Depsides blood, Depsides metabolism, Food, Fortified analysis, Sensitivity and Specificity, Rosmarinic Acid, Animal Feed analysis, Chromatography, High Pressure Liquid methods, Cinnamates analysis, Depsides analysis, Prunella chemistry, Swine blood
- Abstract
This paper describes a sensitive isocratic HPLC/ECD method developed for the determination of rosmarinic acid (RA) in plant material, animal feed, and pig plasma. The plasma sample preparation only includes protein precipitation and adjustment of the pH. The applicability of the method was tested on plasma samples of pigs that were exposed to a 91-day oral intake of RA via feed enriched by aerial parts of Prunella vulgaris. The plasma was directly analyzed using the method described as well as after enzymatic hydrolysis. When no hydrolysis step was included, RA and caffeic acid (CA) were quantified in the plasma. In hydrolyzed plasma samples, several other metabolites were determined, including dihydrocaffeic, ferulic, and dihydroferulic acid. The dual-channel coulometric detection employed, as an alternative to mass spectrometry, offers good selectivity and sensitivity owing to the electrochemical properties of the phenolic constituents.
- Published
- 2007
- Full Text
- View/download PDF
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