22 results on '"Papadimitrakopoulou, Vassiliki A."'
Search Results
2. Abstract 4997: Responsiveness to immune checkpoint inhibitors in RET dependent cancers
- Author
-
Hegde, Aparna, primary, Huang, Le, additional, Liu, Shuang, additional, Hess, Kenneth, additional, Cabanillas, Maria, additional, Hu, Mimi, additional, Busaidy, Naifa, additional, Sherman, Steven, additional, Simon, George, additional, Blumenschein, George, additional, Papadimitrakopoulou, Vassiliki A., additional, Hong, David S., additional, Meric-Bernstam, Funda, additional, Heymach, John, additional, and Subbiah, Vivek, additional
- Published
- 2019
- Full Text
- View/download PDF
3. Abstract A059: Tackling the tumor microenvironment with CD38 blockade to enhance cancer immunotherapy
- Author
-
Chen, Limo, primary, Diao, Lixia, additional, Yi, Xiaohui, additional, Rodriguez, Bertha Leticia, additional, Li, Yanli, additional, Villalobos, Pamela, additional, Cascone, Tina, additional, Liu, Xi, additional, Tan, Lin, additional, Lorenzi, Philip, additional, Fradette, Jared, additional, Peng, David, additional, Skoulidis, Ferdinandos, additional, Fan, Youhong, additional, Rodriguez-Canales, Jaime, additional, Papadimitrakopoulou, Vassiliki, additional, Dmitrovsky, Ethan, additional, Byers, Lauren A, additional, Wang, Jing, additional, Wistuba, Ignasio, additional, Heymach, Jim, additional, and Gibbons, Don, additional
- Published
- 2019
- Full Text
- View/download PDF
4. Abstract 627:NLRC5co-mutations are associated with impaired antigen presentation and immune exclusion inKRAS-mutant lung adenocarcinoma
- Author
-
Skoulidis, Ferdinandos, primary, Hirz, Taghreed, additional, Lee, Xiang Dong, additional, Canales, Jaime Rodriguez, additional, Parra, Edwin R., additional, Tong, Pan, additional, Behrens, Carmen, additional, Papadimitrakopoulou, Vassiliki A., additional, Wang, Jing, additional, Wistuba, Ignacio, additional, and Heymach, John V., additional
- Published
- 2017
- Full Text
- View/download PDF
5. Abstract 1389: A unified and streamlined targeted sequencing system for the quantification of DNA mutations and RNA expression markers in lung cancer
- Author
-
Latham, Gary J., primary, Krosting, Julie, additional, Dodge, Michael, additional, Zeigler, Robert, additional, Chen, Liangjing, additional, Plyler, Jason, additional, Gokul, Shobha, additional, Fujimoto, Junya, additional, Papadimitrakopoulou, Vassiliki, additional, Wistuba, Ignacio, additional, Blidner, Richard, additional, and Haynes, Brian, additional
- Published
- 2016
- Full Text
- View/download PDF
6. Abstract 532: Impact of APOBEC mutagenesis on the immune microenvironment of lung adenocarcinoma (LUAC)
- Author
-
Parra, Edwin R., primary, Tong, Pan, additional, Kadara, Humam, additional, Papadimitrakopoulou, Vassiliki, additional, Izzo, Julie, additional, Rodriguez-Canales, Jaime, additional, Behrens, Carmen, additional, Minna, John D., additional, Wang, Jing, additional, Wistuba, Ignacio I., additional, Heymach, John V., additional, and Skoulidis, Ferdinandos, additional
- Published
- 2016
- Full Text
- View/download PDF
7. Abstract 1144: Detection of a novel ALK fusion variant in lung adenocarcinoma using a comprehensive genomic analysis
- Author
-
Shien, Kazuhiko, primary, Ruder, Dennis, additional, Ileana, Ecaterina E., additional, Papadimitrakopoulou, Vassiliki A., additional, Frampton, Garrett M., additional, Behrens, Carmen, additional, Kalhor, Neda, additional, Lee, J. Jack, additional, Tang, Ximing, additional, Herbst, Roy S., additional, Wistuba, Ignacio I., additional, and Izzo, Julie G., additional
- Published
- 2016
- Full Text
- View/download PDF
8. Abstract 4137: Loss of LKB1 mediates an immune inert phenotype in human lung adenocarcinoma
- Author
-
Denning, Warren L., primary, Skoulidis, Ferdinandos, additional, Shen, Li, additional, Papadimitrakopoulou, Vassiliki, additional, Diao, Lixia, additional, Lou, Yanyan, additional, Byers, Lauren A., additional, Wang, Jing, additional, Canales, Jaime R., additional, Wistuba, Ignacio I., additional, Weinstein, John, additional, Gibbons, Don L., additional, and Heymach, John V., additional
- Published
- 2016
- Full Text
- View/download PDF
9. Abstract 3364: Epithelial-mesenchymal transition is associated with a profound inflammatory tumor microenvironment in lung adenocarcinoma
- Author
-
Lou, Yanyan, primary, Diao, Lixia, additional, Roger, Parra Cuentas Edwin, additional, Denning, Warren L., additional, Chen, Limo, additional, Fan, Youhong, additional, Rodriguez, Jaime, additional, Byers, Lauren, additional, Wang, Jing, additional, Papadimitrakopoulou, Vassiliki, additional, Carmen, Behrens, additional, Wistuba, Ignacio I., additional, Hwu, Patrick, additional, Heymach, John V., additional, and Gibbons, Don L., additional
- Published
- 2015
- Full Text
- View/download PDF
10. Abstract 968: Co-occurring genomic alterations define major subsets ofKRAS-mutant lung adenocarcinoma (LUAC) with distinct biology and therapeutic vulnerabilities
- Author
-
Skoulidis, Ferdinandos, primary, Byers, Lauren, additional, Diao, Lixia, additional, Papadimitrakopoulou, Vassiliki, additional, Tong, Pan, additional, Izzo, Julie, additional, Behrens, Carmen, additional, Kadara, Humam, additional, Parra, Edwin R., additional, Rodriguez-Canales, Jaime, additional, Zhang, Jianjun, additional, Giri, Uma, additional, Gudikote, Jayanthi, additional, Cortez, Maria Angelica, additional, Yang, Chao, additional, Fan, You Hong, additional, Peyton, Michael, additional, Girard, Luc, additional, Coombes, Kevin R., additional, Toniatti, Carlo, additional, Heffernan, Timothy P., additional, Choi, Murim, additional, Frampton, Garrett M., additional, Miller, Vincent, additional, Weinstein, John N., additional, Herbst, Roy S., additional, Wong, Kwok-Kin, additional, Zhang, Jianhua, additional, Sharma, Padmanee, additional, Mills, Gordon M., additional, Hong, Waun Ki, additional, Minna, John D., additional, Allison, James P., additional, Futreal, Andrew, additional, Wang, Jing, additional, Wistuba, Ignacio, additional, and Heymach, John V., additional
- Published
- 2015
- Full Text
- View/download PDF
11. Abstract 955: Specific forms of mutantKRASpredict patient benefit from targeted therapy in the BATTLE-1 clinical trial in advanced non-small cell lung cancer
- Author
-
Ihle, Nate T., primary, Herbst, Roy S., additional, Kim, Edward S., additional, Wistuba, Ignacio I., additional, Lee, J.Jack, additional, Blumenschein, George R., additional, Tsao, Anne S., additional, Chen, Lu, additional, Zhang, Shuxing, additional, Alden, Christine M., additional, Tang, Ximing, additional, Liu, Suyu, additional, Stewart, David J., additional, Papadimitrakopoulou, Vassiliki, additional, Heymach, John V., additional, Tran, Hai T., additional, Hicks, Marshall E., additional, Erasmus, Jeremy J., additional, Gupta, Sanjay, additional, Minna, John D., additional, Larsen, Jill, additional, Lippman, Scott M., additional, Hong, Waun Ki, additional, and Powis, Garth, additional
- Published
- 2011
- Full Text
- View/download PDF
12. Modulation of EZH2 Expression by MEK-ERK or PI3K-AKT Signaling in Lung Cancer Is Dictated by Different KRAS Oncogene Mutations.
- Author
-
Riquelme, Erick, Behrens, Carmen, Lin, Heather Y., Simon, George, Papadimitrakopoulou, Vassiliki, Izzo, Julie, Moran, Cesar, Kalhor, Neda, Lee, J. Jack, Minna, John D., and Wistuba, Ignacio I.
- Subjects
- *
LUNG cancer , *GENETIC overexpression , *GENETIC mutation , *ONCOGENES , *HISTONE methylation , *PROTEIN kinase B , *CELLULAR signal transduction - Abstract
EZH2 overexpression promotes cancer by increasing histone methylation to silence tumor suppressor genes, but how EZH2 levels become elevated in cancer is not understood. In this study, we investigated the mechanisms by which EZH2 expression is regulated in non-small cell lung carcinoma cells by oncogenic KRAS. In cells harboring KRASG12C and KRASG12D mutations, EZH2 expression was modulated by MEK-ERK and PI3K/AKT signaling, respectively. Accordingly, MEK-ERK depletion decreased EZH2 expression in cells harboring the KRASG12C mutation, whereas PI3K/AKT depletion decreased EZH2 expression, EZH2 phosphorylation, and STAT3 activity in KRASG12D-mutant cell lines. Combined inhibition of EZH2 and MEK-ERK or PI3K/AKT increased the sensitivity of cells with specific KRAS mutations to MEK-ERK and PI3K/AKT-targeted therapies. Our work defines EZH2 as a downstream effector of KRAS signaling and offers a rationale for combining EZH2 inhibitory strategies with MEK-ERK- or PI3K/AKT-targeted therapies to treat lung cancer patients, as stratified into distinct treatment groups based on specific KRAS mutations. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
13. Phase II Trial of Ipilimumab with Stereotactic Radiation Therapy for Metastatic Disease: Outcomes, Toxicities, and Low-Dose Radiation-Related Abscopal Responses.
- Author
-
Welsh JW, Tang C, de Groot P, Naing A, Hess KR, Heymach JV, Papadimitrakopoulou VA, Cushman TR, Subbiah V, Chang JY, Simon GR, Ramapriyan R, Barsoumian HB, Menon H, Cortez MA, Massarelli E, Nguyen Q, Sharma P, Allison JP, Diab A, Verma V, Raju U, Shaaban SG, Dadu R, Cabanillas ME, Wang K, Anderson C, Gomez DR, Hahn S, Komaki R, and Hong DS
- Subjects
- Adult, Aged, Aged, 80 and over, Antineoplastic Agents, Immunological adverse effects, Combined Modality Therapy, Female, Humans, Ipilimumab adverse effects, Liver Neoplasms mortality, Liver Neoplasms secondary, Lung Neoplasms mortality, Lung Neoplasms secondary, Male, Middle Aged, Radiosurgery adverse effects, Survival Analysis, Young Adult, Antineoplastic Agents, Immunological therapeutic use, Ipilimumab therapeutic use, Liver Neoplasms drug therapy, Liver Neoplasms radiotherapy, Lung Neoplasms drug therapy, Lung Neoplasms radiotherapy
- Abstract
Ipilimumab is effective for patients with melanoma, but not for those with less immunogenic tumors. We report a phase II trial of ipilimumab with concurrent or sequential stereotactic ablative radiotherapy to metastatic lesions in the liver or lung (NCT02239900). Ipilimumab (every 3 weeks for 4 doses) was given with radiotherapy begun during the first dose (concurrent) or 1 week after the second dose (sequential) and delivered as 50 Gy in 4 fractions or 60 Gy in 10 fractions to metastatic liver or lung lesions. In total, 106 patients received ≥1 cycle of ipilimumab with radiation. Median follow-up was 10.5 months. Median progression-free survival time was 2.9 months (95% confidence interval, 2.45-3.40), and median overall survival time was not reached. Rates of clinical benefit of nonirradiated tumor volume were 26% overall, 28% for sequential versus 20% for concurrent therapy ( P = 0.250), and 31% for lung versus 14% for liver metastases ( P = 0.061). The sequential lung group had the highest rate of clinical benefit at 42%. There were no differences in treatment-related adverse events between groups. Exploratory analysis of nontargeted lesions revealed that lesions receiving low-dose radiation were more likely to respond than those that received no radiation (31% vs. 5%, P = 0.0091). This phase II trial of ipilimumab with stereotactic radiotherapy describes satisfactory outcomes and low toxicities, lending support to further investigation of combined-modality therapy for metastatic cancers., (©2019 American Association for Cancer Research.)
- Published
- 2019
- Full Text
- View/download PDF
14. CD38-Mediated Immunosuppression as a Mechanism of Tumor Cell Escape from PD-1/PD-L1 Blockade.
- Author
-
Chen L, Diao L, Yang Y, Yi X, Rodriguez BL, Li Y, Villalobos PA, Cascone T, Liu X, Tan L, Lorenzi PL, Huang A, Zhao Q, Peng D, Fradette JJ, Peng DH, Ungewiss C, Roybal J, Tong P, Oba J, Skoulidis F, Peng W, Carter BW, Gay CM, Fan Y, Class CA, Zhu J, Rodriguez-Canales J, Kawakami M, Byers LA, Woodman SE, Papadimitrakopoulou VA, Dmitrovsky E, Wang J, Ullrich SE, Wistuba II, Heymach JV, Qin FX, and Gibbons DL
- Subjects
- ADP-ribosyl Cyclase 1 antagonists & inhibitors, Animals, Antineoplastic Agents, Immunological pharmacology, B7-H1 Antigen antagonists & inhibitors, CD8-Positive T-Lymphocytes drug effects, CD8-Positive T-Lymphocytes immunology, Carcinoma, Non-Small-Cell Lung immunology, Cell Line, Tumor, Drug Synergism, Gene Expression Regulation, Neoplastic drug effects, Humans, Interferon-gamma metabolism, Lung Neoplasms immunology, Melanoma genetics, Melanoma immunology, Membrane Glycoproteins antagonists & inhibitors, Mice, Programmed Cell Death 1 Receptor antagonists & inhibitors, Receptors, Purinergic P1 metabolism, Signal Transduction drug effects, Tretinoin metabolism, Tumor Microenvironment drug effects, Up-Regulation drug effects, Xenograft Model Antitumor Assays, ADP-ribosyl Cyclase 1 metabolism, Antineoplastic Agents, Immunological administration & dosage, Carcinoma, Non-Small-Cell Lung drug therapy, Drug Resistance, Neoplasm drug effects, Lung Neoplasms drug therapy, Melanoma drug therapy, Membrane Glycoproteins metabolism
- Abstract
Although treatment with immune checkpoint inhibitors provides promising benefit for patients with cancer, optimal use is encumbered by high resistance rates and requires a thorough understanding of resistance mechanisms. We observed that tumors treated with PD-1/PD-L1 blocking antibodies develop resistance through the upregulation of CD38, which is induced by all-trans retinoic acid and IFNβ in the tumor microenvironment. In vitro and in vivo studies demonstrate that CD38 inhibits CD8
+ T-cell function via adenosine receptor signaling and that CD38 or adenosine receptor blockade are effective strategies to overcome the resistance. Large data sets of human tumors reveal expression of CD38 in a subset of tumors with high levels of basal or treatment-induced T-cell infiltration, where immune checkpoint therapies are thought to be most effective. These findings provide a novel mechanism of acquired resistance to immune checkpoint therapy and an opportunity to expand their efficacy in cancer treatment. Significance: CD38 is a major mechanism of acquired resistance to PD-1/PD-L1 blockade, causing CD8+ T-cell suppression. Coinhibition of CD38 and PD-L1 improves antitumor immune response. Biomarker assessment in patient cohorts suggests that a combination strategy is applicable to a large percentage of patients in whom PD-1/PD-L1 blockade is currently indicated. Cancer Discov; 8(9); 1156-75. ©2018 AACR. See related commentary by Mittal et al., p. 1066 This article is highlighted in the In This Issue feature, p. 1047 ., (©2018 American Association for Cancer Research.)- Published
- 2018
- Full Text
- View/download PDF
15. STK11/LKB1 Mutations and PD-1 Inhibitor Resistance in KRAS -Mutant Lung Adenocarcinoma.
- Author
-
Skoulidis F, Goldberg ME, Greenawalt DM, Hellmann MD, Awad MM, Gainor JF, Schrock AB, Hartmaier RJ, Trabucco SE, Gay L, Ali SM, Elvin JA, Singal G, Ross JS, Fabrizio D, Szabo PM, Chang H, Sasson A, Srinivasan S, Kirov S, Szustakowski J, Vitazka P, Edwards R, Bufill JA, Sharma N, Ou SI, Peled N, Spigel DR, Rizvi H, Aguilar EJ, Carter BW, Erasmus J, Halpenny DF, Plodkowski AJ, Long NM, Nishino M, Denning WL, Galan-Cobo A, Hamdi H, Hirz T, Tong P, Wang J, Rodriguez-Canales J, Villalobos PA, Parra ER, Kalhor N, Sholl LM, Sauter JL, Jungbluth AA, Mino-Kenudson M, Azimi R, Elamin YY, Zhang J, Leonardi GC, Jiang F, Wong KK, Lee JJ, Papadimitrakopoulou VA, Wistuba II, Miller VA, Frampton GM, Wolchok JD, Shaw AT, Jänne PA, Stephens PJ, Rudin CM, Geese WJ, Albacker LA, and Heymach JV
- Subjects
- AMP-Activated Protein Kinase Kinases, Adenocarcinoma of Lung genetics, Adenocarcinoma of Lung metabolism, Adenocarcinoma of Lung therapy, Adult, Aged, Aged, 80 and over, Animals, Antineoplastic Agents, Immunological pharmacology, Antineoplastic Agents, Immunological therapeutic use, Disease Models, Animal, Humans, Immunotherapy, Lung Neoplasms genetics, Lung Neoplasms metabolism, Lung Neoplasms therapy, Male, Mice, Middle Aged, Nivolumab pharmacology, Prognosis, Programmed Cell Death 1 Receptor antagonists & inhibitors, Progression-Free Survival, Adenocarcinoma of Lung drug therapy, Drug Resistance, Neoplasm genetics, Lung Neoplasms drug therapy, Mutation, Nivolumab therapeutic use, Protein Serine-Threonine Kinases genetics, Proto-Oncogene Proteins p21(ras) genetics
- Abstract
KRAS is the most common oncogenic driver in lung adenocarcinoma (LUAC). We previously reported that STK11/LKB1 (KL) or TP53 (KP) comutations define distinct subgroups of KRAS -mutant LUAC. Here, we examine the efficacy of PD-1 inhibitors in these subgroups. Objective response rates to PD-1 blockade differed significantly among KL (7.4%), KP (35.7%), and K-only (28.6%) subgroups ( P < 0.001) in the Stand Up To Cancer (SU2C) cohort (174 patients) with KRAS -mutant LUAC and in patients treated with nivolumab in the CheckMate-057 phase III trial (0% vs. 57.1% vs. 18.2%; P = 0.047). In the SU2C cohort, KL LUAC exhibited shorter progression-free ( P < 0.001) and overall ( P = 0.0015) survival compared with KRAS
MUT ; STK11/LKB1WT LUAC. Among 924 LUACs, STK11/LKB1 alterations were the only marker significantly associated with PD-L1 negativity in TMBIntermediate/High LUAC. The impact of STK11/LKB1 loss promoted PD-1/PD-L1 inhibitor resistance, suggesting a causal role. Our results identify Kras alterations as a major driver of primary resistance to PD-1 blockade in Stk11/Lkb1 loss promoted PD-1/PD-L1 inhibitor resistance, suggesting a causal role. Our results identify STK11/LKB1 alterations as a major driver of primary resistance to PD-1 blockade in KRAS -mutant LUAC. Significance: This work identifies STK11/LKB1 alterations as the most prevalent genomic driver of primary resistance to PD-1 axis inhibitors in KRAS -mutant lung adenocarcinoma. Genomic profiling may enhance the predictive utility of PD-L1 expression and tumor mutation burden and facilitate establishment of personalized combination immunotherapy approaches for genomically defined LUAC subsets. Cancer Discov; 8(7); 822-35. ©2018 AACR. See related commentary by Etxeberria et al., p. 794 This article is highlighted in the In This Issue feature, p. 781 ., (©2018 American Association for Cancer Research.)- Published
- 2018
- Full Text
- View/download PDF
16. New DNA methylation markers and global DNA hypomethylation are associated with oral cancer development.
- Author
-
Foy JP, Pickering CR, Papadimitrakopoulou VA, Jelinek J, Lin SH, William WN Jr, Frederick MJ, Wang J, Lang W, Feng L, Zhang L, Kim ES, Fan YH, Hong WK, El-Naggar AK, Lee JJ, Myers JN, Issa JP, Lippman SM, Mao L, and Saintigny P
- Subjects
- Carcinoma, Squamous Cell pathology, Cell Line, CpG Islands, Disease Progression, Disease-Free Survival, Female, Follow-Up Studies, Humans, Male, Mouth Neoplasms pathology, Phenotype, Precancerous Conditions genetics, Precancerous Conditions pathology, Proportional Hazards Models, Sequence Analysis, DNA, Carcinoma, Squamous Cell genetics, DNA Methylation, Mouth Neoplasms genetics, Promoter Regions, Genetic genetics, Receptor, Angiotensin, Type 1 genetics
- Abstract
DNA promoter methylation of tumor suppressor genes and global DNA hypomethylation are common features of head and neck cancers. Our goal was to identify early DNA methylation changes in oral premalignant lesions (OPL) that may serve as predictive markers of developing oral squamous cell carcinoma (OSCC). Using high-throughput DNA methylation profiles of 24 OPLs, we found that the top 86 genes differentially methylated between patients who did or did not develop OSCC were simultaneously hypermethylated, suggesting that a CpG island methylation phenotype may occur early during OSCC development. The vast majority of the 86 genes were nonmethylated in normal tissues and hypermethylated in OSCC versus normal mucosa. We used pyrosequencing in a validation cohort of 44 patients to evaluate the degree of methylation of AGTR1, FOXI2, and PENK promoters CpG sites that were included in the top 86 genes and of LINE1 repetitive element methylation, a surrogate of global DNA methylation. A methylation index was developed by averaging the percent methylation of AGTR1, FOXI2, and PENK promoters; patients with a high methylation index had a worse oral cancer-free survival (P = 0.0030). On the other hand, patients with low levels of LINE1 methylation had a significantly worse oral cancer-free survival (P = 0.0153). In conclusion, AGTR1, FOXI2, and PENK promoter methylation and LINE1 hypomethylation may be associated with an increased risk of OSCC development in patients with OPLs., (©2015 American Association for Cancer Research.)
- Published
- 2015
- Full Text
- View/download PDF
17. Co-occurring genomic alterations define major subsets of KRAS-mutant lung adenocarcinoma with distinct biology, immune profiles, and therapeutic vulnerabilities.
- Author
-
Skoulidis F, Byers LA, Diao L, Papadimitrakopoulou VA, Tong P, Izzo J, Behrens C, Kadara H, Parra ER, Canales JR, Zhang J, Giri U, Gudikote J, Cortez MA, Yang C, Fan Y, Peyton M, Girard L, Coombes KR, Toniatti C, Heffernan TP, Choi M, Frampton GM, Miller V, Weinstein JN, Herbst RS, Wong KK, Zhang J, Sharma P, Mills GB, Hong WK, Minna JD, Allison JP, Futreal A, Wang J, Wistuba II, and Heymach JV
- Subjects
- AMP-Activated Protein Kinase Kinases, AMP-Activated Protein Kinases metabolism, Adenocarcinoma immunology, Adenocarcinoma metabolism, Adenocarcinoma mortality, Adenocarcinoma therapy, Adenocarcinoma of Lung, Cell Line, Tumor, Cluster Analysis, DNA-Binding Proteins genetics, Gene Expression, Gene Expression Profiling, Humans, Inflammation genetics, Inflammation immunology, Inflammation pathology, Lung Neoplasms immunology, Lung Neoplasms metabolism, Lung Neoplasms mortality, Lung Neoplasms therapy, Oxidative Stress, Prognosis, Protein Serine-Threonine Kinases genetics, Protein Serine-Threonine Kinases metabolism, Signal Transduction, Transcription Factors, Tumor Suppressor Proteins genetics, Adenocarcinoma genetics, Adenocarcinoma pathology, Genetic Variation, Genomics methods, Lung Neoplasms genetics, Lung Neoplasms pathology, Mutation, ras Proteins genetics
- Abstract
Unlabelled: The molecular underpinnings that drive the heterogeneity of KRAS-mutant lung adenocarcinoma are poorly characterized. We performed an integrative analysis of genomic, transcriptomic, and proteomic data from early-stage and chemorefractory lung adenocarcinoma and identified three robust subsets of KRAS-mutant lung adenocarcinoma dominated, respectively, by co-occurring genetic events in STK11/LKB1 (the KL subgroup), TP53 (KP), and CDKN2A/B inactivation coupled with low expression of the NKX2-1 (TTF1) transcription factor (KC). We further revealed biologically and therapeutically relevant differences between the subgroups. KC tumors frequently exhibited mucinous histology and suppressed mTORC1 signaling. KL tumors had high rates of KEAP1 mutational inactivation and expressed lower levels of immune markers, including PD-L1. KP tumors demonstrated higher levels of somatic mutations, inflammatory markers, immune checkpoint effector molecules, and improved relapse-free survival. Differences in drug sensitivity patterns were also observed; notably, KL cells showed increased vulnerability to HSP90-inhibitor therapy. This work provides evidence that co-occurring genomic alterations identify subgroups of KRAS-mutant lung adenocarcinoma with distinct biology and therapeutic vulnerabilities., Significance: Co-occurring genetic alterations in STK11/LKB1, TP53, and CDKN2A/B-the latter coupled with low TTF1 expression-define three major subgroups of KRAS-mutant lung adenocarcinoma with distinct biology, patterns of immune-system engagement, and therapeutic vulnerabilities., (©2015 American Association for Cancer Research.)
- Published
- 2015
- Full Text
- View/download PDF
18. Optimizing biomarkers and endpoints in oral cancer chemoprevention trials.
- Author
-
William WN Jr and Papadimitrakopoulou VA
- Subjects
- Female, Humans, Male, Leukoplakia, Oral drug therapy, Trypsin Inhibitor, Bowman-Birk Soybean therapeutic use, Trypsin Inhibitors therapeutic use
- Abstract
Chemoprevention, defined as the use of natural, synthetic, or biologic compounds to halt, reverse, or prevent the initial phases of carcinogenesis or the progression of neoplastic cells to cancer, has produced successes, but progress has been slow. Notably, in the field of oral cancer prevention and despite extensive clinical investigations, a standard systemic therapy for patients with oral premalignant lesions is yet to be developed. In view of safety concerns surrounding the use of pharmaceuticals, the use of phytochemicals derived from the diet has been considered but has not yet translated into clinical success. The Bowman Birk Inhibitor (BBI) is a serine protease inhibitor isolated from soybeans possessing domains with trypsin and chymotrypsin inhibitory activity. Encouraging results were previously reported in a phase IIa trial of BBI complex in patients with oral leukoplakia with measurable clinical responses and favorable biomarker changes. In this issue of the journal, the less promising results of the randomized, placebo-controlled phase IIb trial are presented. In this commentary, the complexities involved in defining optimal biomarkers and endpoints for oral cancer prevention trials and the development of dietary chemoprevention agents are discussed.
- Published
- 2013
- Full Text
- View/download PDF
19. Gene expression profiling predicts the development of oral cancer.
- Author
-
Saintigny P, Zhang L, Fan YH, El-Naggar AK, Papadimitrakopoulou VA, Feng L, Lee JJ, Kim ES, Ki Hong W, and Mao L
- Subjects
- Adult, Aged, Aged, 80 and over, Carcinoma, Squamous Cell diagnosis, Carcinoma, Squamous Cell drug therapy, Female, Humans, Isotretinoin pharmacology, Male, Middle Aged, Mouth Neoplasms diagnosis, Mouth Neoplasms drug therapy, Oligonucleotide Array Sequence Analysis, RNA, Neoplasm genetics, Reverse Transcriptase Polymerase Chain Reaction, Survival Rate, Teratogens pharmacology, Treatment Outcome, Young Adult, Biomarkers, Tumor genetics, Carcinoma, Squamous Cell genetics, Gene Expression Profiling, Mouth Neoplasms genetics
- Abstract
Patients with oral premalignant lesion (OPL) have a high risk of developing oral cancer. Although certain risk factors, such as smoking status and histology, are known, our ability to predict oral cancer risk remains poor. The study objective was to determine the value of gene expression profiling in predicting oral cancer development. Gene expression profile was measured in 86 of 162 OPL patients who were enrolled in a clinical chemoprevention trial that used the incidence of oral cancer development as a prespecified endpoint. The median follow-up time was 6.08 years and 35 of the 86 patients developed oral cancer over the course. Gene expression profiles were associated with oral cancer-free survival and used to develop multivariate predictive models for oral cancer prediction. We developed a 29-transcript predictive model which showed marked improvement in terms of prediction accuracy (with 8% predicting error rate) over the models using previously known clinicopathologic risk factors. On the basis of the gene expression profile data, we also identified 2,182 transcripts significantly associated with oral cancer risk-associated genes (P value < 0.01; univariate Cox proportional hazards model). Functional pathway analysis revealed proteasome machinery, MYC, and ribosomal components as the top gene sets associated with oral cancer risk. In multiple independent data sets, the expression profiles of the genes can differentiate head and neck cancer from normal mucosa. Our results show that gene expression profiles may improve the prediction of oral cancer risk in OPL patients and the significant genes identified may serve as potential targets for oral cancer chemoprevention., (©2011 AACR.)
- Published
- 2011
- Full Text
- View/download PDF
20. Role of cyclooxygenase-2 in tumor progression and survival of head and neck squamous cell carcinoma.
- Author
-
Saba NF, Choi M, Muller S, Shin HJ, Tighiouart M, Papadimitrakopoulou VA, El-Naggar AK, Khuri FR, Chen ZG, and Shin DM
- Subjects
- Antineoplastic Combined Chemotherapy Protocols therapeutic use, Carboplatin administration & dosage, Carcinoma, Squamous Cell drug therapy, Case-Control Studies, Clinical Trials, Phase II as Topic, Cohort Studies, Disease Progression, Female, Head and Neck Neoplasms drug therapy, Humans, Hyperplasia drug therapy, Hyperplasia enzymology, Hyperplasia mortality, Ifosfamide administration & dosage, Immunoenzyme Techniques, Male, Neoplasm Invasiveness, Neoplasm Staging, Paclitaxel administration & dosage, Precancerous Conditions drug therapy, Precancerous Conditions enzymology, Precancerous Conditions mortality, Prognosis, Survival Rate, Carcinoma, Squamous Cell enzymology, Carcinoma, Squamous Cell mortality, Cyclooxygenase 2 metabolism, Gene Expression Regulation, Neoplastic drug effects, Head and Neck Neoplasms enzymology, Head and Neck Neoplasms mortality
- Abstract
Inhibition of cyclooxygenase-2 (COX-2) pathways may have significant implications for the prevention and treatment of head and neck squamous cell carcinoma (HNSCC). COX-2 is overexpressed in both premalignant lesions and invasive HNSCC. We examined COX-2 expression by immunohistochemistry in normal tissues, different stages of premalignant lesions, and carcinoma in situ (CIS). We also evaluated the correlation between COX-2 expression and clinical characteristics of HNSCC patients. Tissue specimens were obtained from the following: premalignant lesions from 25 subjects enrolled in a biochemoprevention trial, tumor samples collected at diagnosis from 38 HNSCC patients enrolled in an induction chemotherapy trial, and normal control tissues from 10 noncancer, nonsmoking subjects. COX-2 was expressed in early and intermediate stages of premalignant lesions, increasing first in the basal and parabasal layers, then lower spinous, and upper spinous layers. This correlation was noted in normal epithelium (P < 0.0001), histologically normal in-field samples (P < 0.0001), low-grade dysplasia (P = 0.024), and moderate-grade dysplasia (P = 0.009), but was lost in the majority of high-grade dysplasia/CIS (P = 0.896). COX-2 expression was also noted to increase progressively through the early stages of premalignancy, and to decrease in severe/CIS stage and invasive carcinoma. COX-2 expression in tumors from patients treated with induction chemotherapy was correlated with overall survival after controlling for clinical variables. These findings elucidate the differential expression pattern of COX-2 in stages of head and neck premalignant lesions and invasive carcinoma, supporting the rationale for COX-2 inhibition as an important strategy for cancer chemoprevention. Further validation of COX-2 expression is needed in prospective ongoing chemoprevention trials.
- Published
- 2009
- Full Text
- View/download PDF
21. High-dose fenretinide in oral leukoplakia.
- Author
-
William WN Jr, Lee JJ, Lippman SM, Martin JW, Chakravarti N, Tran HT, Sabichi AL, Kim ES, Feng L, Lotan R, and Papadimitrakopoulou VA
- Subjects
- Adult, Aged, Antineoplastic Agents adverse effects, Cell Line, Tumor, Cell Proliferation drug effects, Dose-Response Relationship, Drug, Female, Fenretinide adverse effects, Humans, Male, Middle Aged, Antineoplastic Agents administration & dosage, Fenretinide administration & dosage, Leukoplakia, Oral drug therapy
- Abstract
We previously showed that low-dose fenretinide (200 mg/d) had limited activity in retinoid-resistant oral leukoplakia (34% response rate) possibly because serum drug levels were insufficient to induce retinoid receptor-independent apoptosis. Therefore, we designed the single-arm phase II trial reported here to investigate whether higher-dose fenretinide would improve leukoplakia response over that of our previous study. Leukoplakia patients received fenretinide (900 mg/m(2) twice daily) in four 3-week cycles (1 week on drug followed by 2 weeks off). At week 12, clinical responses were determined and blood samples were collected for serum drug level assessments. A planned interim futility analysis led to early trial closure after the initial 15 (of 25 planned) patients because only 3 (20%) had a partial response (stopping rule:
- Published
- 2009
- Full Text
- View/download PDF
22. Biologic correlates of a biochemoprevention trial in advanced upper aerodigestive tract premalignant lesions.
- Author
-
Papadimitrakopoulou VA, Liu DD, Mao L, Shin DM, El-Naggar A, Ibarguen H, Lee JJ, Hong WK, and Hittelman WN
- Subjects
- Adult, Aged, Biopsy, Needle, Chemoprevention, Chromosome Aberrations, Chromosomes, Human, Pair 17, Chromosomes, Human, Pair 3, Chromosomes, Human, Pair 9, Female, Head and Neck Neoplasms drug therapy, Humans, Immunohistochemistry, Laryngeal Neoplasms genetics, Laryngeal Neoplasms mortality, Laryngeal Neoplasms pathology, Male, Middle Aged, Mouth Neoplasms genetics, Mouth Neoplasms mortality, Mouth Neoplasms pathology, Multivariate Analysis, Neoplasm Staging, Predictive Value of Tests, Probability, Prognosis, Proportional Hazards Models, Sensitivity and Specificity, Biomarkers, Tumor analysis, Genes, p53, Head and Neck Neoplasms genetics, Head and Neck Neoplasms pathology, Mutation, Precancerous Conditions genetics, Precancerous Conditions pathology
- Abstract
Objective: To identify tissue biomarkers that might be used to assess an individual's cancer risk and response to chemoprevention, we studied in dysplastic lesions of the larynx and the p.o. cavity, a series of biomarkers extensively used in previous chemoprevention trials, including chromosome polysomy (CP), proliferative status, p53 expression and gene mutations, and loss of heterozygosity at 9p, 3p, and 17p., Method: Biopsies from 32 participants in a prospective chemoprevention trial using 13-cis-retinoic acid, IFN-alpha, and alpha-tocopherol for 12 months (20 with vocal cord and 12 with p.o. cavity lesions) were analyzed for p53 and Ki-67 expression by immunohistochemistry, loss of heterozygosity by PCR amplification, p53 mutations by PCR-based direct sequencing, and CP by in situ hybridization., Results: High CP (> or =4% cells with more than three chromosome copies per nucleus) was more common in p.o. (8 of 10) than laryngeal lesions (4 of 16; P = 0.01), and so was a combination of CP > or = 4% and parabasal layer p53 labeling index > or = 0.2 (P = 0.02). Low CP was a significant predictor of complete histological response (8 of 14 cases with low versus 1 of 12 cases with high CP; P = 0.01). A trend for histological progression or cancer development was observed in cases with high CP and parabasal layer p53 labeling index., Conclusion: Low CP, more frequently observed in laryngeal lesions, appears to be a predictor of response to chemoprevention and could be used as a screening tool to identify suitable candidates for such approaches. Further investigation of biological parameters of response and cancer risk is warranted.
- Published
- 2002
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.