25 results on '"Afzal, Muhammad"'
Search Results
2. Nanomedicine in treatment of breast cancer – A challenge to conventional therapy.
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Afzal, Muhammad, Ameeduzzafar, Alharbi, Khalid Saad, Alruwaili, Nabil K, Al-Abassi, Fahad A., Al-Malki, Abdulrahman Al Labeed, Kazmi, Imran, Kumar, Vikas, Kamal, Mohammad Amjad, Nadeem, Muhammad Shahid, Aslam, Muhammad, and Anwar, Firoz
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BREAST cancer , *CANCER treatment , *NANOMEDICINE , *MEDICAL research , *DRUG efficacy - Abstract
Amongst the various types of cancer, breast cancer is a highly heterogeneous disease and known as the leading cause of death among women globally. The extensive interdisciplinary investigation in nanotechnology and cancer biomedical research has been evolved over the years for its effective treatment. However, the advent of chemotherapeutic resistance in breast cancer is one of the major confront researchers are facing in achieving successful chemotherapy. Research in the area of cancer nanotechnology over the years have now been revolutionized through the development of smart polymers, lipids, inorganic materials and eventually their surface-engineering with targeting ligands. Moreover, nanotechnology further extended and brings in the notice the new theranostic approach which combining the therapy and imaging simultaneously. Currently, research is being envisaged in the area of novel nano-pharmaceutical design viz. liposome, nanotubes, polymer lipid hybrid system, which focuses to make the chemotherapy curative and long-lasting. In this review, we aimed to discuss the recent advancement of different surface-engineered/targeted nanomedicines that improved the drug efficacy in breast cancer. [ABSTRACT FROM AUTHOR]
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- 2021
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3. Enhanced removal of ciprofloxacin using humic acid modified hydrogel beads.
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Afzal, Muhammad Zaheer, Yue, Rengyu, Sun, Xue-Fei, Song, Chao, and Wang, Shu-Guang
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CIPROFLOXACIN , *HUMIC acid , *BEADS - Abstract
Graphical abstract Abstract In this study, humic acid coated biochar (HA-BC) and chitosan were combined to prepare an adsorbent with enhanced reactivity for the removal of ciprofloxacin (CIP). With initial CIP concentrations of 250 mg/L, the maximum adsorbed amount was 154.89 mg/g. Removal rates reached equilibrium after 12 h, obeying the pseudo second-order kinetic model. Adsorption isotherm data was better fitted to the Langmuir isotherm model. The sorption capacity of humic acid-biochar/chitosan hydrogel beads (HBCB) decreased by 11.42%, 6.66%, 9.32%, and 23.92% in the presence of NaCl, NaNO 3 , Na 2 SO 4 , and Na 3 PO 4 , respectively. A complex mechanism was found to be responsible for the adsorptive removal of CIP including, hydrogen bonding, π-π electron donor–acceptor (EDA) interactions and hydrophobic interactions. After four regeneration steps, sorption capacity remained sufficient (61.23 mg/g). These removal results indicate that HBCB is durable and effective for long term CIP removal. [ABSTRACT FROM AUTHOR]
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- 2019
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4. Determination of insecticide residues and their adverse effects on blood profile of occupationally exposed individuals.
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Hayat, Khizar, Afzal, Muhammad, Aqueel, Muhammad Anjum, Ali, Sajjad, Khan, Qaiser M., and Ashfaq, Umair
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PLANT protection ,INSECTICIDE residues ,BIOMARKERS ,MANN Whitney U Test ,DEVELOPING countries - Abstract
Insecticides, essential for crop protection measures, leave behind several toxic residues that can result in a series of human health disorders. Therefore, this study was planned for the determination of residues and adverse effects of insecticides in blood samples of sprayers, pesticide-industry workers and controls by using blood parameters of these individuals as biomarkers. Optimized analytical methods using GC-MS and HPLC for the simultaneous detection of 22 currently used insecticides were adopted. Eight of twenty-seven (22.22%) sprayers’ blood samples were found positive for five different insecticides. Eleven of twenty-seven (40.74%) pesticide-industry workers were found positive for eight different insecticides. The blood samples of both the exposed groups, sprayers and industry workers had significantly (P < 0.001; Mann-Whitney U- tests) low hemoglobin-Hb concentrations (12.17 ± 2.13 and 12.22 ± 2.37 g/dl respectively) than the average value of the control group with 14.23 ± 2.37 g/dl. The erythrocyte sedimentation rates (ESRs) in sprayers and insecticide industry workers (28.78 ± 20.72 and 28.17 ± 25.14 mm/1st h respectively) were greater significantly (P < 0.001; Mann-Whitney U test) than the control blood samples (9.53 ± 3.34 mm/1st h). These results indicate that the exposed individuals have experienced significant hemotoxic effects during insecticide exposure. The study also predicts the risk to exposed individuals in developing countries like Pakistan and demands realization of safety measures to prevent such dangerous effects of pesticide exposures. [ABSTRACT FROM AUTHOR]
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- 2018
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5. Larvicidal activity of green synthesized iron oxide nanoparticles using Grevillea robusta Cunn. leaf extract against vector mosquitoes and their characterization.
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Zargham, Faisal, Afzal, Muhammad, Rasool, Khadija, Manzoor, Saba, and Qureshi, Naveeda Akhtar
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IRON oxide nanoparticles , *IRON oxides , *MOSQUITO vectors , *ANOPHELES stephensi , *AEDES aegypti , *URBAN ecology - Abstract
Extensive fumigation of synthetic pesticides to control the mosquito vector during each post-monsoon season in Pakistan significantly enhanced the environmental contamination and extinction of beneficial insects from the urban ecosystems. In this context, the present study examined the larvicidal efficacy of green synthesized iron nanoparticles (IONPs), using an aqueous leaf extract of Grevillea robusta against the early 2nd and 4th instar larvae of Aedes aegypti and Anopheles stephensi in Pakistan. The prepared IONPs were characterized by UV–Vis spectrum, FTIR, X-ray diffraction, scanning electron microscopy, and energy-dispersive diffraction. Larvicidal bioassay was conducted at various concentrations (80, 160, 240, 320, and 400 ppm) of IONPs prepared from leaf extract of G. robusta, and readings were taken-every 12 h for two consecutive days. In vitro, larvicidal assay, G. robusta leaf extract IONPs exhibited high mortalities of 64–96% (LC 50 = 259.07 ppm; LC 90 = 443.92 ppm) for the second instar and 65–98% (LC 50 = 238.05 ppm; LC 90 = 433.93 ppm) for the fourth instar of Ae. aegypti , while in the case of An. stephensi 56–84% (LC 50 = 297.96 ppm; LC 90 = 528.69 ppm) for the second and 56–88% (LC 50 = 292.72 ppm; LC 90 = 514.00 ppm) mortality for fourth larvae at 12–48 h post-exposure times were observed respectively. Significant (p < 0.05) dose-dependent and exposure time-dependent trends were observed among the 2nd and 4th larvalinstar of An. stephensi and Ae. aegypti. However, both species showed similar response and observed no significant (p > 0.05) difference in percentage mortality between the vector mosquitoes An. stephensi and Ae. aegypti. Overall, this study demonstrates that the larvicidal efficacy of green synthesized IONPs at low concentrations can be an ideal eco-friendly and cost-effective biocontrol of vector mosquitoes' larvae of An. stephensi and Ae. aegypti. [Display omitted] • Green synthesized IONPs of G. robusta leaf extract killed 64-96% mosquito larvae at 80-400 ppm after 12–48 h post-exposure. • The crystalline cuboidal IONPs of 41.9 nm penetrated the larvae' exoskeleton and induced high percentage mortality. • Dose-dependent and exposure time-dependent trends were observed in percentage mortality among An. stephensi and Ae. aegypti. • No significant (p > 0.05) differences in mortality were observed among An. stephensi and Ae. aegypti larvae. [ABSTRACT FROM AUTHOR]
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- 2023
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6. Deep learning to refine the identification of high-quality clinical research articles from the biomedical literature: Performance evaluation.
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Lokker, Cynthia, Bagheri, Elham, Abdelkader, Wael, Parrish, Rick, Afzal, Muhammad, Navarro, Tamara, Cotoi, Chris, Germini, Federico, Linkins, Lori, Haynes, R. Brian, Chu, Lingyang, and Iorio, Alfonso
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[Display omitted] Identifying practice-ready evidence-based journal articles in medicine is a challenge due to the sheer volume of biomedical research publications. Newer approaches to support evidence discovery apply deep learning techniques to improve the efficiency and accuracy of classifying sound evidence. To determine how well deep learning models using variants of Bidirectional Encoder Representations from Transformers (BERT) identify high-quality evidence with high clinical relevance from the biomedical literature for consideration in clinical practice. We fine-tuned variations of BERT models (BERT BASE , BioBERT, BlueBERT, and PubMedBERT) and compared their performance in classifying articles based on methodological quality criteria. The dataset used for fine-tuning models included titles and abstracts of >160,000 PubMed records from 2012 to 2020 that were of interest to human health which had been manually labeled based on meeting established critical appraisal criteria for methodological rigor. The data was randomly divided into 80:10:10 sets for training, validating, and testing. In addition to using the full unbalanced set, the training data was randomly undersampled into four balanced datasets to assess performance and select the best performing model. For each of the four sets, one model that maintained sensitivity (recall) at ≥99% was selected and were ensembled. The best performing model was evaluated in a prospective, blinded test and applied to an established reference standard, the Clinical Hedges dataset. In training, three of the four selected best performing models were trained using BioBERT BASE. The ensembled model did not boost performance compared with the best individual model. Hence a solo BioBERT-based model (named DL-PLUS) was selected for further testing as it was computationally more efficient. The model had high recall (>99%) and 60% to 77% specificity in a prospective evaluation conducted with blinded research associates and saved >60% of the work required to identify high quality articles. Deep learning using pretrained language models and a large dataset of classified articles produced models with improved specificity while maintaining >99% recall. The resulting DL-PLUS model identifies high-quality, clinically relevant articles from PubMed at the time of publication. The model improves the efficiency of a literature surveillance program, which allows for faster dissemination of appraised research. [ABSTRACT FROM AUTHOR]
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- 2023
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7. Thiamine potentiates chemoprotective effects of ibuprofen in DEN induced hepatic cancer via alteration of oxidative stress and inflammatory mechanism.
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Afzal, Muhammad, Kazmi, Imran, Khan, Ruqaiyah, Rana, Poonam, Kumar, Vikas, Al-Abbasi, Fahad A., Zamzami, Mazin A., and Anwar, Firoz
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VITAMIN B1 , *IBUPROFEN , *ANTINEOPLASTIC agents , *DRUG efficacy ,ANALGESIC effectiveness - Abstract
Present study, was an effort to scrutinize the molecular and biochemical role of ibuprofen and thiamine combination in diethylnitrosamine (DEN)-induced HCC in Wistar rats. Single intraperitoneal injection of DEN (200 mg/kg) was used for induction of HCC in rats. The rats were divided into eight various groups. DEN induced rats were treated with pure ibuprofen (40 mg/kg) and thiamine in combination for the period of 12th weeks. The protocol was terminated after the 16th week. Exposure of DEN up-regulated the levels of different serum biochemical parameters, antioxidant enzyme level, Alfa-fetoprotein (AFP) and reduced the level of High density lipoprotein (HDL) in Wistar rats along with the alteration in pro-inflammatory cytokines viz., interlukin-6 (IL-6), Tumor necrosis factor (TNF-α) and Interleukin-1β (IL-1β) with decrease in body weight. Macroscopic evaluation, revealed DEN group rats confirmed the expansion of hepatic nodules, which were reduced by the individual treatment of ibuprofen and thiamine, but the synergistic treatment of ibuprofen and thiamine confirm the significant reduction of hepatic nodules. Further, this combination possesses the significant chemoprotective effect in DEN-induced HCC by restoring the hepatic enzymes and other biomarkers along with an alteration in pro-inflammatory cytokines. The above result concludes that ibuprofen and thiamine combination possess potent anti-cancerous activity. [ABSTRACT FROM AUTHOR]
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- 2017
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8. Laboratory selection of chlorpyrifos resistance in an Invasive Pest, Phenacoccus solenopsis (Homoptera: Pseudococcidae): Cross-resistance, stability and fitness cost.
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Ejaz, Masood, Afzal, Muhammad Babar Shahzad, Shabbir, Ghulam, Serrão, José Eduardo, Shad, Sarfraz Ali, and Muhammad, Wali
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NIPAECOCCUS viridis , *PHENACOCCUS , *CHLORPYRIFOS , *CHEMICAL stability , *INSECTICIDE resistance - Abstract
The cotton mealybug, Phenacoccus solenopsis is an important polyphagous sucking pest of ornamentals, horticultural and fiber crops worldwide. Some P. solenopsis populations have developed insecticide resistance. This study evaluated cross-resistance, stability of insecticide resistance and life history traits affected by chlorpyrifos resistance in P. solenopsis . After nine generations selected with chlorpyrifos, P. solenopsis exhibited a 539.76-fold resistance level compared to an unselected population (UNSEL Pop). Chlorpyrifos selected population (Chlor-SEL Pop) displayed moderate cross-resistance to profenofos, nitenpyram and high cross-resistance to lambda-cyhalothrin. Biological parameters of P. Solenopsis were affected by chlorpyrifos resistance. The Chlor-SEL Pop had a significant reduction in fitness (relative fitness = 0.10), along with significant decreases in pupal weight, fecundity, egg hatching %, intrinsic rate of natural population increase, biotic potential, and mean relative growth rate. It is concluded that selection with chlorpyrifos had marked effect on resistance development in P. solenopsis and upon removal of selection pressure chlorpyrifos resistance declined significantly indicating unstable resistance. Development of resistance led to high fitness costs for the chlorpyrifos-selected strain. These findings should be helpful for better and more successful resistance management of P. solenopsis . [ABSTRACT FROM AUTHOR]
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- 2017
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9. Inheritance, realized heritability and biochemical mechanism of acetamiprid resistance in the cotton mealybug, Phenacoccus solenopsis Tinsley (Homoptera: Pseudococcidae).
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Afzal, Muhammad Babar Shahzad, Abbas, Naeem, and Shad, Sarfraz Ali
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HERITABILITY , *INSECTICIDE resistance , *NIPAECOCCUS viridis , *COTTON , *INSECT populations , *PIPERONYL butoxide - Abstract
The cotton mealybug, Phenacoccus solenopsis Tinsley (Homoptera: Pseudococcidae) is a serious pest in many countries of the world because of its polyphagous nature and has caused huge losses to the cotton crop. The aim of present study was to explore the mode of inheritance and mechanism of acetamiprid resistance in P. solenopsis . After five rounds of selection with acetamiprid, P. solenopsis developed a 315-fold resistance compared with the laboratory susceptible population. The LC 50 values of progenies of both reciprocal crosses (F 1 and F 1 ′) showed no significant difference and degree of dominance values were 0.56 and 0.93 for F 1 and F 1 ′, respectively. Monogenic model of inheritance and Lande's method revealed that more than one factors were involved in acetamiprid resistance. Realized heritability ( h 2 ) value was 0.58 for acetamiprid resistance. A synergism study of piperonyl butoxide (PBO) and S,S,S-tributylphosphorotrithioate (DEF) with acetamiprid also showed the significant presence of P-450 mono-oxygenase and esterase in the acetamiprid resistance. Hence, acetamiprid resistance in the P. solenopsis was autosomal, incompletely dominant and polygenic. These results are a source of basic information to design and plan fruitful management programmes to control P. solenopsis . [ABSTRACT FROM AUTHOR]
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- 2015
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10. Genetics and preliminary mechanism of chlorpyrifos resistance in Phenacoccus solenopsis Tinsley (Homoptera: Pseudococcidae).
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Afzal, Muhammad Babar Shahzad, Ijaz, Mamuna, Farooq, Zahra, Shad, Sarfraz Ali, and Abbas, Naeem
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CHLORPYRIFOS , *PHENACOCCUS , *INSECTICIDE resistance , *AGRICULTURAL pests , *CROP yields - Abstract
Cotton mealybug, Phenacoccus solenopsis Tinsley, is a serious pest of cotton and other crops and infestation by this pest results in yield losses that affect the economy of Pakistan. Various groups of insecticides have been used to control this pest but resistance development is a major factor that inhibits its control in the field. Chlorpyrifos is a common insecticide used against many pests including P. solenopsis . The present experiment was designed to assess the genetics and mechanism of chlorpyrifos resistance and to develop a better resistance management strategy and assess the genetics and mechanism of chlorpyrifos resistance. Before selection, the field strain showed 3.1-fold resistance compared to the susceptible strain (CSS). After 8 rounds of selection with chlorpyrifos, a selected population developed a 191.0-fold resistance compared to the CSS. The LC 50 values of F 1 (CRR ♀ × CSS ♂) and F 1 † (CRR ♂ × CSS ♀) strains were not significantly different and dominance (D LC ) values were 0.42 and 0.55. Reciprocal crosses between chlorpyrifos susceptible and resistant strains indicated that resistance was autosomal and incompletely recessive. The monogenic model of fit test and calculation of number of genes segregating in the chlorpyrifos resistant strain demonstrated that resistance is controlled by multiple genes. A value of 0.59 was calculated for realized heritability for chlorpyrifos resistance. Synergism bioassays with piperonyl butoxide and S, S, S-butyl phosphorotrithioate showed that chlorpyrifos resistance was associated with microsomal oxidases and esterases. It was concluded that chlorpyrifos resistance in P. solenopsis was autosomally inherited, incompletely recessive and polygenic. These findings would be helpful to improve the management of P. solenopsis . [ABSTRACT FROM AUTHOR]
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- 2015
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11. Characterization of Carnobacterium maltaromaticum LMA 28 for its positive technological role in soft cheese making.
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Afzal, Muhammad Inam, Gonzalez Ariceaga, Citlalli Celeste, Lhomme, Emilie, Ali, Nehal Kamel, Payot, Sophie, Burgain, Jennifer, Gaiani, Claire, Borges, Frédéric, Revol-Junelles, Anne-Marie, Delaunay, Stéphane, and Cailliez-Grimal, Catherine
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CHEESE industry , *LACTIC acid bacteria , *CHEESE microbiology , *PHYLOGENY , *LACTOCOCCUS lactis , *STREPTOCOCCUS thermophilus , *DAIRY industry - Abstract
Abstract: Carnobacterium maltaromaticum is a lactic acid bacterium isolated from soft cheese. The objective of this work was to study its potential positive impact when used in cheese technology. Phenotypic and genotypic characterization of six strains of C. maltaromaticum showed that they belong to different phylogenetic groups. Although these strains lacked the ability to coagulate milk quickly, they were acidotolerant. They did not affect the coagulation capacity of starter lactic acid bacteria, Lactococcus lactis and Streptococcus thermophilus, used in dairy industry. The impact of C. maltaromaticum LMA 28 on bacterial flora of cheese revealed a significant decrease of Psychrobacter sp. concentration, which might be responsible for cheese aging phenomena. An experimental plan was carried out to unravel the mechanism of inhibition of Psychrobacter sp. and Listeria monocytogenes and possible interaction between various factors (cell concentration, NaCl, pH and incubation time). Cellular concentration of C. maltaromaticum LMA 28 was found to be the main factor involved in the inhibition of Psychrobacter sp. and L. monocytogenes. [Copyright &y& Elsevier]
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- 2013
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12. Carnobacterium maltaromaticum: Identification, isolation tools, ecology and technological aspects in dairy products
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Afzal, Muhammad Inam, Jacquet, Thibaut, Delaunay, Stéphane, Borges, Frédéric, Millière, Jean-Bernard, Revol-Junelles, Anne-Marie, and Cailliez-Grimal, Catherine
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DAIRY microbiology , *MICROBIAL ecology , *LACTIC acid bacteria , *ECOLOGICAL niche , *DAIRY product flavors & odors , *FOOD pathogens , *LISTERIA monocytogenes , *FOOD consumption - Abstract
Abstract: Carnobacterium species constitute a genus of Lactic Acid Bacteria (LAB) present in different ecological niches. The aim of this article is to summarize the knowledge about Carnobacterium maltaromaticum species at different microbiological levels such as taxonomy, isolation and identification, ecology, technological aspects and safety in dairy products. Works published during the last decade concerning C. maltaromaticum have shown that this non-starter LAB (NSLAB) could present major interests in dairy product technology. Four reasons can be mentioned: i) it can grow in milk during the ripening period with no competition with starter LAB, ii) this species synthesizes different flavouring compounds e.g., 3-methylbutanal, iii) it can inhibit the growth of foodborne pathogens as Listeria monocytogenes due to its ability to produce bacteriocins, iv) it has never been reported to be involved in human diseases as no cases of human infection have been directly linked to the consumption of dairy products containing this species. [Copyright &y& Elsevier]
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- 2010
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13. Method to overcome photoreaction, a serious drawback to the use of dichlorofluorescin in evaluation of reactive oxygen species
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Afzal, Muhammad, Matsugo, Seiichi, Sasai, Masaaki, Xu, Baohui, Aoyama, Kohji, and Takeuchi, Toru
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FLUOROSCOPY , *PHOTOOXIDATIVE stress - Abstract
Non-fluorescent dichlorofluorescin (DCFH) was converted to fluorescent products by photo-irradiation during observations with spectrofluorometer and fluorescence microscopy. Photo-irradiation of DCFH at 250, 300, 330, 400, 500, or 600 nm generated fluorescent dichlorofluorescein (DCF), an oxidation product of DCFH, and an unrecognized fluorescent product. The ratio of the unknown product to DCF varied from 0.15 to 8.21 depending on wavelength. Although reactive oxygen species scavengers, such as catalase, superoxide dismutase, and sodium azide, did not suppress the increase in non-specified fluorescence, reagents such as ascorbic acid, mercaptopropionyl glycine, and methoxycinnamic acid, in a cell-free system, almost completely suppressed it with little effect on the fluorescence of DCF. Meanwhile, ascorbic acid also suppressed non-specified fluorescence in cells, but not completely. At low concentrations of DCFH, the speed of increasing fluorescence was considerably retarded, to such a degree that the fluorescence increase in cells during fluorescence microscopic observation was negligible. The addition, at the time of evaluation, of the above reagents to cell-free systems and, in cell systems, reducing the concentration of DCFH, effectively suppressed the photoreaction of DCFH. [Copyright &y& Elsevier]
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- 2003
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14. Making science computable: Developing code systems for statistics, study design, and risk of bias.
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Alper, Brian S., Dehnbostel, Joanne, Afzal, Muhammad, Subbian, Vignesh, Soares, Andrey, Kunnamo, Ilkka, Shahin, Khalid, McClure, Robert C., and COVID-19 Knowledge Accelerator (COKA) Initiative
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The COVID-19 crisis led a group of scientific and informatics experts to accelerate development of an infrastructure for electronic data exchange for the identification, processing, and reporting of scientific findings. The Fast Healthcare Interoperability Resources (FHIR®) standard which is overcoming the interoperability problems in health information exchange was extended to evidence-based medicine (EBM) knowledge with the EBMonFHIR project. A 13-step Code System Development Protocol was created in September 2020 to support global development of terminologies for exchange of scientific evidence. For Step 1, we assembled expert working groups with 55 people from 26 countries by October 2020. For Step 2, we identified 23 commonly used tools and systems for which the first version of code systems will be developed. For Step 3, a total of 368 non-redundant concepts were drafted to become display terms for four code systems (Statistic Type, Statistic Model, Study Design, Risk of Bias). Steps 4 through 13 will guide ongoing development and maintenance of these terminologies for scientific exchange. When completed, the code systems will facilitate identifying, processing, and reporting research results and the reliability of those results. More efficient and detailed scientific communication will reduce cost and burden and improve health outcomes, quality of life, and patient, caregiver, and healthcare professional satisfaction. We hope the achievements reached thus far will outlive COVID-19 and provide an infrastructure to make science computable for future generations. Anyone may join the effort at https://www.gps.health/covid19_knowledge_accelerator.html. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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15. Biochemical composition of the beans of local coffee cultivars from southwestern Saudi Arabia.
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Oteef, Mohammed D.Y., Khemira, Habib, Tounekti, Taieb, Mahdhi, Mosbah, AlFaifi, Zarraq, Sharma, Mukul, Afzal, Muhammad, and AlSolami, Wail
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HIERARCHICAL clustering (Cluster analysis) , *COFFEE beans , *COFFEE plantations , *CHLOROGENIC acid , *CULTIVARS , *COFFEE , *COFFEE growing - Abstract
Coffee (Coffea arabica L.) is an economically and culturally important crop for the communities of the southwest mountain regions of Saudi Arabia. The objective of the study was to characterize the biochemical composition of the dry green beans of the coffee cultivars grown there. The analysis of variance revealed significant differences among the 66 accessions studied for all eight biochemical compounds analyzed especially, caffeine, trigonelline and chlorogenic acid. Remarkably, caffeine concentrations varied from 0.75 g 100 g−1 in accession KSA-38–1.51 g 100 g−1 in KSA-47 and trigonelline concentrations varied from 0.81 g 100 g−1 in KSA-69–1.64 g 100 g−1 in KSA-6R. However, 55% and 64% of the accessions had low to moderate caffeine and trigonelline concentrations, respectively. Chlorogenic acid concentration varied from 2.35 g 100 g−1 in KSA-3R to 4.33 g 100 g−1 in KSA-32. Because these compounds are the most important bitterness attributes contributing to coffee quality, significant differences in beverage quality are expected between the accessions. Furthermore, the results of the multivariate analysis indicated the presence of considerable diversity among the 66 accessions. The hierarchical cluster analysis grouped the genotypes into fourteen clusters. The observed divergence suggests that genetic gains for biochemical features are possible. Therefore, we recommend accessions KSA-1, KSA-9R, KSA-10, KSA-29, KSA34, KSA37, KSA-38, KSA-39 and KSA-60 for further evaluation. • There were differences in the bean biochemical composition among the 66 accessions. • Caffeine varied from 0.75 to 1.51 g 100 g−1 and trigonelline varied from 0.81 to 1.64 g 100 g−1. • The genotypes were grouped into fourteen clusters. • Accessions KSA9R, KSA10, KSA21, KSA29, KSA38 and KSA60 should be further evaluated. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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16. Juggling with fluorescent proteins: Spectrum and structural changes of the mCardinal2 variants.
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Kim, Tae-Yeon, Yoon, Tae-Sung, Kang, Sunghyun, and Afzal, Muhammad
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FLUORESCENT proteins , *CYTOSKELETAL proteins , *FLUORESCENCE spectroscopy , *GREEN fluorescent protein , *CRYSTAL structure , *HYDROGEN bonding - Abstract
mCardinal2 is a red fluorescent protein developed through the designs of mKate, mNeptune and mCardinal. Fluorescence spectrums of mCardinal2 and its five mutants (T143C, T143G, C158A, C158D and M160E) were measured with their quantum yields. C158A and C158D increased brightness with slight changes in fluorescence spectrums while T143C, T143G and M160E decreased brightness with blue shift in fluorescence spectrums, which resulted in green, cyan and green fluorescent proteins respectively. Crystal structures of all six variants were analyzed and compared together with those of mKate, LSS -mKate1, LSS -mKate2 and mCardinal. Around the Cα-Cβ bond of Tyr64 in the MYG chromophores, only C158A and C158D were in the trans conformation while all others were mostly in the cis conformation. Blue-shift brightness-decreased variants (T143C, T143G and M160E) showed the diminished hydrogen bonds while large-Stoke-shift brightness-increased variant C158D showed the enhanced hydrogen bonds around the chromophore. • Variants of a red fluorescent protein (FP) turned out to be red, yellow, green and cyan FPs. • Crystal structures of mCardinal2 variants were solved from high-resolution diffraction data. • Changes in fluorescence spectrums of mCardinal2 variants could be related with those in their crystal structures. • Fluorescence characteristics of mKate lineage and mCardinal2 variants were compared and analyzed with their design goals. [ABSTRACT FROM AUTHOR]
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- 2022
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17. Advances in Elucidating Beneficial Interactions Between Plants, Soil, and Bacteria.
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Mitter, Birgit, Brader, Günter, Afzal, Muhammad, Compant, Stephane, Naveed, Muhammad, Trognitz, Friederike, and Sessitsch, Angela
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PLANT development , *MICROORGANISMS , *PLANT growth , *BACTERIA , *FOOD crops , *INORGANIC soil pollutants , *FOOD chains - Abstract
Abstract: Survival of every organism on earth depends on its interactions with other organisms. For example, animals form associations with the intestinal microflora, while plants develop symbiotic associations with neighboring plants, microflora, and microfauna. Most of the associations between plants and microorganisms are mediated by organic compounds released by the plant. The plant root system acts as a factory and exudes enormous amount of chemicals to effectively communicate with the surrounding soil organisms. Bacteria on roots and in the rhizosphere can also utilize these organic compounds as a source of nutrients and enhance their population size and metabolic activities. In return, plant-associated bacteria improve plant growth and development by different mechanisms including nitrogen fixation, provision of nutrients, and mediating resistance against pathogens. Although plant–bacterial partnerships have been found effective to enhance biomass production, their importance and relevance in agricultural systems are still underestimated. A better understanding of beneficial interactions between plant, soil, and bacteria could be exploited to improve growth and health of food and feed crops. Plant growth-promoting mechanisms of bacteria might enhance biomass production in a more sustainable manner, even on marginal land. Furthermore, plant growth-promoting and/or pollutant-degrading activities of bacteria could be exploited to improve the efficiency of phytoremediation of organic and inorganic pollutants from the soil and water or to protect the food chain by decreasing the concentrations of pollutants in food crops. [Copyright &y& Elsevier]
- Published
- 2013
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18. Lens lipids and maximum lifespan
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Borchman, Douglas, Yappert, Marta C., and Afzal, Muhammad
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LIPIDS , *LENSES , *MORTALITY , *CATARACT surgery - Abstract
Unlike in most organs, the lipid composition of lenses varies dramatically among species and with age. The focus of this study is to assess how these changes relate to lifespan. Studies on cataract suggest that the lens may serve as a window into the processes leading to accelerated mortality. As a first step toward elucidating cellular processes in the lens that may serve as markers for accelerated mortality, we examined the correlation between species-dependent and age-related lens lipid compositional differences and maximum life span. We included data from camels, which, even in old age, rarely develop cataracts although they live under adverse conditions. Camel lens lipids were mainly composed of sphingolipids (77%) and phosphatidylcholines (23%). Bovine lens lipid composition was comparable to a previous study, and both bovine lens sphingolipids, phosphatidylcholines and camel lens phosphatidylcholines content fit well (within the 95% confidence limits) in the curve obtained by plotting maximum life spans of other species with sphingolipids and phosphatidylcholines. Lifespan was directly related to lens sphingolipid content and indirectly related to lens phosphatidylcholine content. The camel lens sphingolipid value was significantly above the curve for other species.Except for the camel lens nucleus, lipid order and sphingolipid content were linearly related,
p<0·005, with a slope of 0·85±0·07, and intercept of 6·9±3·8. Lipid phase transition temperature and sphingolipid content were also linearly related,p=0·01, with a slope of 0·20±0·07, and intercept of 21·7±5·3.Our data support the hypothesis that humans have adapted so that their lens membranes have a high sphingolipid content that confers resistance to oxidation, allowing these membranes to stay clear for a relatively longer time than is the case in many other species. Age-related changes in human lens lipid composition may serve as a marker for oxidative stress and may reflect systemic oxidative insult, providing a window into the health of an individual. [Copyright &y& Elsevier]- Published
- 2004
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19. A mouse model for SPG48 reveals a block of autophagic flux upon disruption of adaptor protein complex five.
- Author
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Khundadze, Mukhran, Ribaudo, Federico, Hussain, Adeela, Rosentreter, Jan, Nietzsche, Sandor, Thelen, Melanie, Winter, Dominic, Hoffmann, Birgit, Afzal, Muhammad Awais, Hermann, Tanja, de Heus, Cecilia, Piskor, Eva-Maria, Kosan, Christian, Franzka, Patricia, von Kleist, Lisa, Stauber, Tobias, Klumperman, Judith, Damme, Markus, Proikas-Cezanne, Tassula, and Hübner, Christian A.
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ADAPTOR proteins , *FAMILIAL spastic paraplegia , *FLUX (Energy) , *GAIT disorders , *ENDOSOMES , *MICE - Abstract
Hereditary spastic paraplegia is a spastic gait disorder that arises from degeneration of corticospinal axons. The subtype SPG48 is associated with mutations in the zeta subunit of the adaptor protein complex five (AP5). AP5 function and the pathophysiology of SPG48 are only poorly understood. Here, we report an AP5 zeta knockout mouse, which shows an age-dependent degeneration of corticospinal axons. Our analysis of knockout fibroblasts supports a trafficking defect from late endosomes to the trans Golgi network and reveals a structural defect of the Golgi. We further show that both autophagic flux and the recycling of lysosomes from autolysosomes were impaired in knockout cells. In vivo , we observe an increase of autophagosomes and autolysosomes and, at later stages, the accumulation of intracellular waste in neurons. Taken together, we propose that loss of AP5 function blocks autophagy and thus leads to the aberrant accumulation of autophagic cargo, which finally results in axon degeneration. • First in vivo disease model for AP5-deficency. • Redistribution of Golgi related proteins to lysosomes upon knockout of AP5 zeta. • Structural alterations of the trans Golgi network. • Block of autophagic flux and impaired recycling of lysosomes from autolyosomes under challenged conditions. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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20. Neuromodulation targets pathological not physiological beta bursts during gait in Parkinson's disease.
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Anidi, Chioma, O'Day, Johanna J., Anderson, Ross W., Afzal, Muhammad Furqan, Syrkin-Nikolau, Judy, Velisar, Anca, and Bronte-Stewart, Helen M.
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CARE of Parkinson's disease patients , *GROWTH associated protein-43 , *PATHOLOGICAL anatomy , *GAIT in humans , *DEEP brain stimulation , *NEURAL circuitry - Abstract
Abstract Freezing of gait (FOG) is a devastating axial motor symptom in Parkinson's disease (PD) leading to falls, institutionalization, and even death. The response of FOG to dopaminergic medication and deep brain stimulation (DBS) is complex, variable, and yet to be optimized. Fundamental gaps in the knowledge of the underlying neurobiomechanical mechanisms of FOG render this symptom one of the unsolved challenges in the treatment of PD. Subcortical neural mechanisms of gait impairment and FOG in PD are largely unknown due to the challenge of accessing deep brain circuitry and measuring neural signals in real time in freely-moving subjects. Additionally, there is a lack of gait tasks that reliably elicit FOG. Since FOG is episodic, we hypothesized that dynamic features of subthalamic (STN) beta oscillations, or beta bursts, may contribute to the Freezer phenotype in PD during gait tasks that elicit FOG. We also investigated whether STN DBS at 60 Hz or 140 Hz affected beta burst dynamics and gait impairment differently in Freezers and Non-Freezers. Synchronized STN local field potentials, from an implanted, sensing neurostimulator (Activa® PC + S, Medtronic, Inc.), and gait kinematics were recorded in 12 PD subjects, off-medication during forward walking and stepping-in-place tasks under the following randomly presented conditions: NO, 60 Hz, and 140 Hz DBS. Prolonged movement band beta burst durations differentiated Freezers from Non-Freezers, were a pathological neural feature of FOG and were shortened during DBS which improved gait. Normal gait parameters, accompanied by shorter bursts in Non-Freezers, were unchanged during DBS. The difference between the mean burst duration between hemispheres (STNs) of all individuals strongly correlated with the difference in stride time between their legs but there was no correlation between mean burst duration of each STN and stride time of the contralateral leg, suggesting an interaction between hemispheres influences gait. These results suggest that prolonged STN beta burst durations measured during gait is an important biomarker for FOG and that STN DBS modulated long not short burst durations, thereby acting to restore physiological sensorimotor information processing, while improving gait. Highlights • First study to investigate STN beta bursts during gait in freely moving PD subjects • Prolonged movement beta band burst durations were a pathological feature of FOG • STN DBS shortened pathological burst durations and improved gait in Freezers • Normal gait parameters, accompanied by shorter bursts, were not modulated by DBS • Greater difference in burst duration between STNs correlated with more impaired gait [ABSTRACT FROM AUTHOR]
- Published
- 2018
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21. Integrated perspectives on the use of bacterial endophytes in horizontal flow constructed wetlands for the treatment of liquid textile effluent: Phytoremediation advances in the field.
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Malik, Mumtaz Hasan, Hussain, Zahid, Arslan, Muhammad, Iqbal, Samina, Afzal, Muhammad, and Mohsin, Muhammad
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ENDOPHYTES , *CONSTRUCTED wetlands , *WASTEWATER treatment , *TEXTILE waste , *LIQUID waste , *PHYTOREMEDIATION , *PLANT-bacteria relationships - Abstract
Constructed wetlands (CWs) have emerged as cost-effective and sustainable treatment systems for the remediation of industrial wastewaters; nevertheless, their potential has mostly been evaluated in laboratory-scale studies. Likewise, endophytic bacteria can enhance plant growth and reduce phytotoxicity under polluted conditions, but their application with pilot-scale CWs has rarely been evaluated. The present study aims to evaluate on-site performance of endophyte-assisted pilot-scale horizontal flow constructed wetlands (HFCWs) for the remediation of effluent from a textile industry. The HFCWs were established by planting Leptochloa fusca in the presence of three endophytic bacterial strains with dye degrading, and plant growth promoting capabilities. We found that the system was able to remove a significant proportion of both organic and inorganic pollutants. Maximum reduction of pollutants was observed in endophyte-augmented HFCWs, where the COD and BOD reduced from 493 to 70 mg l −1 and 190 to 42 mg l −1 , respectively, within 48 h. Additionally, survival of endophytic bacteria in different components of the HFCWs was also recorded. Treated wastewater was found to be non-toxic and the inoculated bacteria showed persistence in the wastewater as well as rhizo- and endosphere of L. fusca . Accordingly, a positive impact on plant growth was observed in the presence of bacterial augmentation. The system performance was comparable to the vertical flow constructed wetlands (VFCWs) as high nutrients reduction was seen in the presence of this partnership. This pilot-scale study is a step forward toward the field-scale application of phytoremediation coupled with bacterial endophytes as a cost-effective means of on-site wastewater remediation. To the best of our knowledge, this is among the first pilot-scale studies on use of HFCWs for improvement in quality of textile industry effluent as most previous studies are limited either in the context of engineering or lack effective interplay of plant and bacteria. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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22. Subthalamic neural entropy is a feature of freezing of gait in freely moving people with Parkinson's disease.
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Syrkin-Nikolau, Judy, Koop, Mandy Miller, Prieto, Thomas, Anidi, Chioma, Afzal, Muhammad Furqan, Velisar, Anca, Blumenfeld, Zack, Martin, Talora, Trager, Megan, and Bronte-Stewart, Helen
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PARKINSON'S disease , *BRAIN diseases , *DEEP brain stimulation , *NEURAL stimulation , *BRAIN waves - Abstract
The goal of this study was to investigate subthalamic (STN) neural features of Freezers and Non-Freezers with Parkinson's disease (PD), while freely walking without freezing of gait (FOG) and during periods of FOG, which were better elicited during a novel turning and barrier gait task than during forward walking. Methods: Synchronous STN local field potentials (LFPs), shank angular velocities, and ground reaction forces were measured in fourteen PD subjects (eight Freezers) off medication, OFF deep brain stimulation (DBS), using an investigative, implanted, sensing neurostimulator (Activa® PC + S, Medtronic, Inc.). Tasks included standing still, instrumented forward walking, stepping in place on dual forceplates, and instrumented walking through a turning and barrier course. Results: During locomotion without FOG, Freezers showed lower beta (13–30 Hz) power (P = 0.036) and greater beta Sample Entropy (P = 0.032), than Non-Freezers, as well as greater gait asymmetry and arrhythmicity (P < 0.05 for both). No differences in alpha/beta power and/or entropy were evident at rest. During periods of FOG, Freezers showed greater alpha (8–12 Hz) Sample Entropy (P < 0.001) than during walking without FOG. Conclusions: A novel turning and barrier course was superior to FW in eliciting FOG. Greater unpredictability in subthalamic beta rhythms was evident during stepping without freezing episodes in Freezers compared to Non-Freezers, whereas greater unpredictability in alpha rhythms was evident in Freezers during FOG. Non-linear analysis of dynamic neural signals during gait in freely moving people with PD may yield greater insight into the pathophysiology of FOG; whether the increases in STN entropy are causative or compensatory remains to be determined. Some beta LFP power may be useful for rhythmic, symmetric gait and DBS parameters, which completely attenuate STN beta power may worsen rather than improve FOG. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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23. Resistance of green lacewing, Chrysoperla carnea Stephens to nitenpyram: Cross-resistance patterns, mechanism, stability, and realized heritability.
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Mansoor, Muhammad Mudassir, Raza, Abu Bakar Muhammad, Abbas, Naeem, Aqueel, Muhammad Anjum, and Afzal, Muhammad
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CHRYSOPIDAE , *PEST control , *HERITABILITY , *PREDATION , *CHRYSOPERLA - Abstract
The green lacewing, Chrysoperla carnea Stephens (Neuroptera: Chrysopidae) is a major generalist predator employed in integrated pest management (IPM) plans for pest control on many crops. Nitenpyram, a neonicotinoid insecticide has widely been used against the sucking pests of cotton in Pakistan. Therefore, a field green lacewing strain was exposed to nitenpyram for five generations to investigate resistance evolution, cross-resistance pattern, stability, realized heritability, and mechanisms of resistance. Before starting the selection with nitenpyram, a field collected strain showed 22.08-, 23.09-, 484.69- and 602.90-fold resistance to nitenpyram, buprofezin, spinosad and acetamiprid, respectively compared with the Susceptible strain. After continuous selection for five generations (G1–G5) with nitenpyram in the laboratory, the Field strain (Niten-SEL) developed a resistance ratio of 423.95 at G6. The Niten-SEL strain at G6 showed no cross-resistance to buprofezin and acetamiprid and negative cross-resistance to spinosad compared with the Field strain (G1). For resistance stability, the Niten-SEL strain was left unexposed to any insecticide for four generations (G6–G9) and bioassay results at G10 showed that resistance to nitenpyram, buprofezin and spinosad was stable, while resistance to acetamiprid was unstable. The realized heritability values were 0.97, 0.16, 0.03, and − 0.16 to nitenpyram, buprofezin, acetamiprid and spinosad, respectively, after five generations of selection. Moreover, the enzyme inhibitors (PBO or DEF) significantly decreased the nitenpyram resistance in the resistant strain, suggesting that resistance was due to microsomal oxidases and esterases. These results are very helpful for integration of green lacewings in IPM programs. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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24. Genetics and realized heritability of resistance to imidacloprid in a poultry population of house fly, Musca domestica L. (Diptera: Muscidae) from Pakistan.
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Khan, Hussnain, Abbas, Naeem, Shad, Sarfraz Ali, and Afzal, Muhammad Babar Shahzad
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IMIDACLOPRID , *HOUSEFLY insecticide resistance , *POULTRY , *BIOLOGICAL assay , *HERITABILITY - Abstract
Imidacloprid, a post-synaptic, nicotinic insecticide, has been commonly used for the management of different pests including Musca domestica worldwide. Many pests have developed resistance to this insecticide. A 16-fold imidacloprid-resistant population of M. domestica infesting poultry was selected using imidacloprid for 13 continuous generations to study the inheritance and realized heritability of resistance. Toxicological bioassay at G 14 showed that the imidacloprid-selected population developed 106-fold resistance when compared to the susceptible population. Reciprocal crosses of susceptible and resistant populations showed an autosomal trait of resistance to imidacloprid in M. domestica . There was incompletely recessive resistance in F 1 (Imida-SEL ♂ × Susceptible ♀) and F 1 † (Imida-SEL ♀ × Susceptible ♂) having dominance value 0.53 and 0.31, respectively. Monogenic model of inheritance showed that imidacloprid resistance was controlled by multiple factors. The realized heritability value was 0.09 in the imidacloprid-selected population of M. domestica . It was concluded that imidacloprid resistance in M. domestica was autosomally inherited, incompletely recessive and polygenic. These findings should be helpful for better and more successful management of M. domestica . [ABSTRACT FROM AUTHOR]
- Published
- 2014
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25. CRISPR/Cas9 to generate plant immunity against pathogen.
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Zaynab, Madiha, Sharif, Yasir, Fatima, Mahpara, Afzal, Muhammad Zohaib, Aslam, Mehtab Muhammad, Raza, Muhammad Fahad, Anwar, Muhammad, Raza, Muhammad Ammar, Sajjad, Nelam, Yang, Xuewei, and Li, Shuangfei
- Subjects
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DISEASE resistance of plants , *PLANT-pathogen relationships , *FUNGAL viruses , *ZINC-finger proteins , *CROPS , *GENOME editing - Abstract
Different types of molecular approaches have been used for improving resistance against pathogens to secure food. Efficient and advanced genome editing tool as paralleled to earlier techniques like Zinc Finger Nuclease (ZFN), transcription activator-like effector nucleases (TALENs), and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR). The approach of CRISPR/Cas9 has updated our abilities of genetic manipulation in many crops. The assembly of purposes that can be achieved through CRISPR/Cas9 and its related products make it a powerful system that will expose novel prospects in the complex domain of plant-pathogen interactions and will help to develop crop resistance against pathogens. CRISPR/Cas9 engineering permits DNA endonuclease guided by an RNA for a range of genome engineering applications across various eukaryotic species and provides an effective platform to create resistance against bacteria, viruses, insects, and fungi. In this review, we discuss CRISPR-Cas9 engineered crop plants resistant to specific pathogens. • Resistance against diseases and higher production of crops would be helpful in maintaining food security. • Different types of molecular approaches have been used for improving resistance against pathogenic genes. • CRISPR/Cas9 systems will be beneficial in upcoming studies about plant–pathogen interactions. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
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