1. Polymorphism in HIV-1 dependency factor PDE8A affects mRNA level and HIV-1 replication in primary macrophages.
- Author
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Bol SM, Booiman T, Bunnik EM, Moerland PD, van Dort K, Strauss JF 3rd, Sieberer M, Schuitemaker H, Kootstra NA, and van 't Wout AB
- Subjects
- 3',5'-Cyclic-AMP Phosphodiesterases metabolism, Cell Line, Cells, Cultured, Genetic Variation, HIV Infections metabolism, HIV-1 genetics, Humans, Macrophages metabolism, RNA, Messenger genetics, RNA, Messenger metabolism, 3',5'-Cyclic-AMP Phosphodiesterases genetics, HIV Infections genetics, HIV Infections virology, HIV-1 physiology, Macrophages virology, Polymorphism, Single Nucleotide, Virus Replication
- Abstract
Four genome-wide RNAi screens have recently identified hundreds of HIV-1 dependency factors (HDFs). Previously, we reported a large variation in the ability of HIV-1 to replicate in monocyte-derived macrophages (MDM) derived from >400 healthy seronegative blood donors. Here we determined whether SNPs in genes encoding newly identified HDFs were associated with this variation in HIV-1 replication. We found a significant association between the minor allele of SNP rs2304418 in phosphodiesterase 8A (PDE8A) and lower HIV-1 replication (p=2.4×10(-6)). The minor allele of SNP rs2304418 was also significantly associated with lower PDE8A mRNA levels in MDM (p=8.3×10(-5)). In accordance with this, overexpression of PDE8A in HEK293T cells resulted in increased HIV-1 replication, while subsequent knock-down of PDE8A decreased replication. This study links host genetic variation in a newly identified HDF to variation in HIV-1 replication in a relevant primary target cell for HIV-1 and may provide new leads for treatment of this infection., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
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