1. The RNA landscape of the human commensal Segatella copri reveals a small RNA essential for gut colonization.
- Author
-
El Mouali, Youssef, Tawk, Caroline, Huang, Kun D., Amend, Lena, Lesker, Till Robin, Ponath, Falk, Vogel, Jörg, and Strowig, Till
- Abstract
The bacterium Segatella copri is a prevalent member of the human gut microbiota associated with health and disease states. However, the intrinsic factors that determine its ability to colonize the gut effectively remain largely unknown. By extensive transcriptome mapping of S. copri and examining human-derived samples, we discover a small RNA, which we name Segatella RNA colonization factor (SrcF), and show that SrcF is essential for S. copri gut colonization in gnotobiotic mice. SrcF regulates genes involved in nutrient acquisition, and complex carbohydrates, particularly fructans, control its expression. Furthermore, SrcF expression is strongly influenced by human microbiome composition and by the breakdown of fructans by cohabitating commensals, suggesting that the breakdown of complex carbohydrates mediates interspecies signaling among commensals beyond its established function in generating energy. Together, this study highlights the contribution of a small RNA as a critical regulator in gut colonization. [Display omitted] • Annotation of the RNA landscape of the human gut commensal Segatella copri • Metatranscriptomics identified highly expressed S. copri small RNAs in the gut • The small RNA SrcF is essential for S. copri gut colonization in gnotobiotic mice • Fructan degradation by cohabitating gut commensals regulates SrcF expression El Mouali et al. characterized the RNA landscape of the human gut-residing bacteria Segatella copri using in vitro and gut-derived samples. They identified a small RNA regulator essential for gut colonization and whose expression is regulated by the metabolism of dietary components by S. copri and cohabitating microbiota members. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF