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Abstract Hepatocellular carcinoma (HCC) is associated with high mortality rate. This study investigated the status of lipid metabolism-related genes in HCC. Bulk transcriptomic and single-cell sequencing data for HCC were retrieved from public databases. The single-cell sequencing data was subjected to dimensionality reduction, which facilitated the annotation of distinct cell subpopulations and marker gene expression analysis within each subpopulation. Genes associated with lipid metabolism in liver cells were identified, and a machine-learning model was developed using the bulk transcriptomic data randomly partitioned into training and validation sets. The efficacy of the model was validated using these two sets. A multifactorial Cox analysis on the model genes combined with clinical features, led to the identification of age, HMGCS2, HNRNPU, and RAN as independent prognostic factors, which were included in the nomogram model construction and validation. A weighted gene co-expression analysis of all genes of the bulk transcriptome samples revealed the correlation between gene modules and risk score. Genes with cor > 0.4 in the highest-expressing module were selected for Gene Ontology and Kyoto Encyclopedia of Genes and Genomes functional enrichment analysis. Immune-related analysis was conducted based on seven algorithms for immune cell infiltration prediction. For the genes in the nomogram model, the expression in clinical pathological factors was also analyzed. The drug sensitivity analysis offered a reference for the selection of targeting drugs. This investigation provides novel insights and a theoretical basis for the prognosis, treatment, and pharmaceutical advancements for patients diagnosed with HCC.

The branches and leaves of 8 varieties of Lonicera japonica as materials, a high-performance liquid chromatography detection method for 8 phenolic acid components was established to determine the content characteristics of phenolic acids in the samples. The content determination results were evaluated by multivariate statistical methods such as cluster analysis, factor comprehensive analysis, and partial least squares discriminant analysis (PLS-DA). The results indicated that the established method for determining the content of 8 phenolic acids in the branches and leaves of L. japonica was stable, reliable and simple. The variation range of phenolic acids total content in the branches and leaves of 8 varieties of L. japonica was 19.4162~33.6684 mg·g−1, and 40.9900~80.3068 mg·g−1, respectively. The total content of phenolic acids varied greatly among different varieties, with 'Beihua No.1' had the highest total content in both branches and leaves, and 'Juhua No.1' had the lowest total content. Cluster analysis found that among the branches of 'Beihua No.1' was clustered separately into one group, with higher content of each component than other varieties. Factor comprehensive analysis showed that the comprehensive score of 'Beihua No.1' was >1. PLS-DA analysis identified isochlorogenic acid A, isochlorogenic acid C, ferulic acid and chlorogenic acid as the main components that might cause differences in phenolic acid content in branches. Among leaves, 'Beihua No.1' and 'Jiufeng No.1' were clustered into one category, and their comprehensive factor analysis scores were both greater than 1. PLS-DA analysis identified chlorogenic acid, caffeic acid and ferulic acid as the main components that might cause differences in phenolic acid content in leaves. In summary, there were differences in the main phenolic acid composition characteristics of different varieties. In terms of phenolic acid content, the branches and leaves of 'Beihua No.1' and 'Jiufeng No.1' have more advantages. This study provides a scientific basis for the utilization of L. japonica branches and leaves.

The application of offshore wind power gangways ensures the normal operation of offshore wind turbines and provides reliable support for optimizing the boarding process, improving the operation and maintenance efficiency, and reducing the cost of wind power projects. This paper provides an overview of the development history and technological progress of gangways, and analyzes the main equipment in this field and its performance at home and abroad, as well as discussing the key technologies of offshore wind turbine gangways in such aspects as motion sensing and data analysis, compensation control and execution, structural design and reliability, and composite material application. It is pointed out that the parallel platform is the mainstream offshore gangway actuator; wave compensation is the core of equipment performance and the source of competitiveness; and advanced wave compensation technology depends on the development of sensor technology, artificial intelligence technology and other multidisciplinary development. This paper makes a comprehensive analysis for researchers and practitioners in the field of offshore wind power gangways, providing valuable references for subsequent technology exploration.

This work explores the potential of a triple combination of meropenem (MEM), a novel metallo-β-lactamase (MBL) inhibitor (indole-2-carboxylate 58 (InC58)), and a serine-β-lactamase (SBL) inhibitor (avibactam (AVI)) for broad-spectrum activity against carbapenemase-producing bacteria. A diverse panel comprising MBL- and SBL-producing strains was used for susceptibility testing of the triple combination using the agar dilution method. The frequency of resistance (FoR) to MEM combined with InC58 was investigated. Mutants were sequenced and tested for cross resistance, fitness, and the stability of the resistance phenotype. Compared with the double combinations of MEM plus an SBL or MBL inhibitor, the triple combination extended the spectrum of activity to most of the isolates bearing SBLs (oxacillinase-48 (OXA-48) and Klebsiella pneumoniae carbapenemase-2 (KPC-2)) and MBLs (New Delhi metallo-β-lactamases (NDMs)), although it was not effective against Verona integron-encoded metallo-β-lactamase (VIM)-carrying Pseudomonas aeruginosa (P. aeruginosa) and OXA-23-carrying Acinetobacter baumannii (A. baumannii). The FoR to MEM plus InC58 ranged from 2.22 × 10−7 to 1.13 × 10−6. The resistance correlated with mutations to ompC and comR, affecting porin C and copper permeability, respectively. The mutants manifested a fitness cost, a decreased level of resistance during passage without antibiotic pressure, and cross resistance to another carbapenem (imipenem) and a β-lactamase inhibitor (taniborbactam). In conclusion, compared with the dual combinations, the triple combination of MEM with InC58 and AVI showed a much wider spectrum of activity against different carbapenemase-producing bacteria, revealing a new strategy to combat β-lactamase-mediated antimicrobial resistance.

To comprehensively understand the genetic information of Lactiplantibacillus plantarum SGJ-24 and thoroughly analyze the functional genes associated with its tolerance to challenging vinous environments, reduction of biological acid, and biogenic amine degradation activities. The study was conducted using whole-genome sequencing, which combined second-generation Illumina HiSeq technology with third-generation PacBio RS II technology. The results showed that, a total genome size of 3451191 bp and 3361 coding genes. Numerous genes were annotated for functions such as nutrient (sugar, amino acid and so on) transport and metabolism, protein synthesis, and nucleic acid metabolism. Additionally, specific functional genes related to the versatile activities of this strain were identified, including malolactic fermentation activity (MLE and so on), acid tolerance (gadB and so on), ethanol tolerance (PFK, GK and so on), and biogenic amine degradation (GAPDH) function. The research findings provided a deep insight into the genetic characteristics of L. plantarum SGJ-24, laying a theoretical foundation for further development and utilization of the strain.

ABSTRACT Background MiRNA let7d‐5p has been recently reported to be abnormally expressed in diabetes‐associated atherosclerosis (AS). However, it still remains unknown how let7d‐5p contributes to the process of atherosclerosis. Methods Twenty fresh tissues and a total of 28 wax block specimens from carotid endarterectomy procedures were obtained from the Luoyang Central Hospital affiliated to Zhengzhou University. The expression of let7d‐5p was assessed using quantitative RT‐PCR (qRT‐PCR). A series of in vitro experiments was used to determine the roles of let7d‐5p knockdown and overexpression in vascular smooth muscle cells (VSMCs). Results We discovered that the carotid plaques from diabetic patients had lower expression levels of miR let7d‐5p. In VSMCs, the expression of miRNA let7d‐5p was significantly lower in high glucose conditions compared with low glucose situations. The proliferation and migration of VSMCs were also inhibited by the overexpression of let7d‐5p, whereas the opposite was true when let7d‐5p was inhibited, according to gain and loss of function studies. Mechanically, let7d‐5p might activate the GSK3β/β‐catenin signaling pathway via binding to the high mobility group AT‐Hook 2 (HMGA2) mRNA in VSMCs. Additionally, GLP‐1RA liraglutide may prevent the migration and proliferation of VSMCs by raising let7d‐5p levels. Conclusions High glucose stimulated the proliferation and migration of VSMCs by regulating the let7d‐5p/HMGA2/GSK3β/β‐catenin pathway, and liraglutide may slow atherosclerosis by increasing the levels of miR let7d‐5p.

Little information is known about the increased aroma compounds and possible mechanism in Tamarix ramosissima Ledeb roasted mutton (TRM). A comprehensive analysis of aroma compounds and lipids were firstly performed by lipidomics and sensomics approach. The results indicated that 9 out of 53 aroma compounds were considered as key odorants, including 5-methyl-2,3-diethylpyrazine. The roasted mutton contained highest levels of phosphatidylcholine (PC, 13.95%), triglyceride (TG, 13.50%), and phosphatidylethanolamine (PE, 12.25%). TG 18:0_18:0_18:1 and nine odorants were the potential biomarkers for discriminating differential samples due to variable importance in projection (VIP) > 1 and p

Background: The role and molecular mechanisms of collagen type VII (COL7A1) in cholangiocarcinoma (CCA) remain unknown. Methods: We analyzed the expression of COL7A1 in CCA and its relationship with patient prognosis using bioinformatic techniques. Expression levels of COL7A1 in CCA cells and tissues were detected using reverse transcription-quantitative PCR, western blotting, and immunohistochemistry. The effects of COL7A1 expression on the proliferation, migration, and invasion of CCA cells were assessed using CCK-8, colony formation, and Transwell assays. Bioinformatics and luciferase reporter gene assays were performed to examine the binding of KLF4 to COL7A1, and cytological experiments further verified the role of KLF4 in regulating the CCA phenotype through COL7A1. Xenograft mouse models were established to investigate the effects of COL7A1 on CCA tumor growth in vivo. Results: CCA tissues exhibited higher COL7A1 expression than normal bile duct tissues. There was no significant correlation between high or low COL7A1 expression and the survival time of patients with CCA. COL7A1 knockdown inhibited CCA cell proliferation, migration, and invasion. Furthermore, COL7A1 knockdown suppressed the activation of the PI3K/AKT signaling pathway. KLF4 can bind to COL7A1 and regulate COL7A1 expression, which in turn regulates the PI3K/AKT signaling pathway and impacts the proliferation and metastasis of CCA cells. Conclusion: Our findings suggest that KLF4 regulates CCA cell proliferation, migration, and invasion via the COL7A1/PI3K/AKT axis.

Abstract Objectives This study aims to elucidate the transcriptomic signatures and dysregulated pathways in patients with Systemic Lupus Erythematosus (SLE), with a particular focus on those persisting during disease remission. Methods We conducted bulk RNA-sequencing of peripheral blood mononuclear cells (PBMCs) from a well-defined cohort comprising 26 remission patients meeting the Low Lupus Disease Activity State (LLDAS) criteria, 76 patients experiencing disease flares, and 15 healthy controls. To elucidate immune signature changes associated with varying disease states, we performed extensive analyses, including the identification of differentially expressed genes and pathways, as well as the construction of protein-protein interaction networks. Results Several transcriptomic features recovered during remission compared to the active disease state, including down-regulation of plasma and cell cycle signatures, as well as up-regulation of lymphocytes. However, specific innate immune response signatures, such as the interferon (IFN) signature, and gene modules involved in chromatin structure modification, persisted across different disease states. Drug repurposing analysis revealed certain drug classes that can target these persistent signatures, potentially preventing disease relapse. Conclusion Our comprehensive transcriptomic study revealed gene expression signatures for SLE in both active and remission states. The discovery of gene expression modules persisting in the remission stage may shed light on the underlying mechanisms of vulnerability to relapse in these patients, providing valuable insights for their treatment.

Abstract Background To establish a method to induce Campylobacter jejuni colonization in the intestines of C57BL/6 mice through antibiotic-induced microbiome depletion. Results Fifty-four female C57BL/6 mice were divided into the normal, control, and experimental groups. The experimental group was administered intragastric cefoperazone sodium and sulbactam sodium (50 mg/mL) for 2 days; then, the experimental and control mice were intragastrically administered 200 µL C. jejuni, which was repeated once more after 2 days. Animal feces were collected, and the HipO gene of C. jejuni was detected using TaqMan qPCR from day 1 to day 14 after modeling completion. Immunofluorescence was used to detect intestinal C. jejuni colonization on day 14, and pathological changes were observed using hematoxylin and eosin staining. Additionally, 16S rDNA analyses of the intestinal contents were conducted on day 14. In the experimental group, C. jejuni was detected in the feces from days 1 to 14 on TaqMan qPCR, and immunofluorescence-labeled C. jejuni were visibly discernable in the intestinal lumen. The intestinal mucosa was generally intact and showed no significant inflammatory-cell infiltration. Diversity analysis of the colonic microbiota showed significant inter-group differences. In the experimental group, the composition of the colonic microbiota differed from that in the other 2 groups at the phylum level, and was characterized by a higher proportion of Bacteroidetes and a lower proportion of Firmicutes. Conclusions Microbiome depletion induced by cefoperazone sodium and sulbactam sodium could promote long-term colonization of C. jejuni in the intestines of mice.

Protective vaccines are crucial for preventing and controlling coronavirus disease 2019 (COVID-19). Updated vaccines are needed to confront the continuously evolving and circulating severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants. These vaccines should be safe, effective, amenable to easily scalable production, and affordable. Previously, we developed receptor binding domain (RBD) dimer-based protein subunit vaccines (ZF2001 and updated vaccines) in mammalian cells. In this study, we explored a strategy for producing RBD-dimer immunogens in Pichia pastoris. We found that wild-type P. pastoris produced hyperglycosylated RBD-dimer protein containing four N-glycosylation sites in P. pastoris. Therefore, we engineered the wild type P. pastoris (GS strain) into GSΔOCH1pAO by deleting the OCH1 gene (encoding α-1,6-mannosyltransferase enzyme) to decrease glycosylation, as well as by overexpressing the HIS4 gene (encoding histidine dehydrogenase) to increase histidine synthesis for better growth. In addition, RBD-dimer protein was truncated to remove the R328/F329 cleavage sites in P. pastoris. Several homogeneous RBD-dimer proteins were produced in the GSΔOCH1pAO strain, demonstrating the feasibility of using the P. pastoris expression system. We further resolved the cryo-EM structure of prototype-Beta RBD-dimer complexed with the neutralizing antibody CB6 to reveal the completely exposed immune epitopes of the RBDs. In a murine model, we demonstrated that the yeast-produced RBD-dimer induces robust and protective antibody responses, which is suitable for boosting immunization. This study developed the yeast system for producing SARS-CoV-2 RBD-dimer immunogens, providing a promising platform and pipeline for the future continuous updating and production of SARS-CoV-2 vaccines.

H5, H7, and H9 are pivotal avian influenza virus (AIV) subtypes that cause substantial economic losses and pose potential threats to public health worldwide. In this study, a novel triplex fluorescence reverse transcription-loop-mediated isothermal amplification (TLAMP) assay was developed in which traditional LAMP techniques were combined with probes for detection. Through this innovative approach, H5, H7, and H9 subtypes of AIV can be simultaneously identified and differentiated, thereby offering crucial technical support for prevention and control efforts. Three primer sets and composite probes were designed based on conserved regions of the haemagglutinin gene for each subtype. The probes were labelled with distinct fluorophores at their 3′ ends, which were detached to release the fluorescence signal during the amplification process. The detection results were interpreted based on the colour of the TLAMP products. Then, the reaction conditions were optimized, and three primer sets and probes were combined in the same reaction system, resulting in a TLAMP detection assay for the differential diagnosis of AIV subtypes. Sensitivity testing with in vitro-transcribed RNA revealed that the detection limit of the TLAMP assay was 205 copies per reaction for H5, 360 copies for H7, and 545 copies for H9. The TLAMP assay demonstrated excellent specificity, no cross-reactivity with related avian viruses, and 100% consistency with a previously published quantitative polymerase chain reaction (qPCR) assay. Therefore, due to its simplicity, rapidity, sensitivity, and specificity, this TLAMP assay is suitable for epidemiological investigations and is a valuable tool for detecting and distinguishing H5, H7, and H9 subtypes of AIV in clinical samples.

Using granulated blast furnace slag (GGBS) as the volcanic ash material and fly ash (FA) as the supplementary material, the study was conducted to investigate the mix proportions of an alkali-activated solid waste cementitious material under the stimulating effect of alkali activator carbide slag (CS). This type of cementitious material could serve as a substitute for a portion of cement usage, contributing to resource conservation and mitigating environmental pollution caused by solid waste. This facilitates green and sustainable development. Firstly, an analysis of three raw materials was conducted, and the mix proportions were designed with reference to the CaO-Al2O3-SiO2 system of Portland cement. Then 28 groups of specimens were prepared based on the designed mix proportions. The flowability and setting time of each group of specimens were tested. It was observed that an increase in the amount of CS and a decrease in the amount of GGBS resulted in decreased flowability and earlier setting times of the specimens. Additionally, FA exhibited a retarding effect on setting time. Compressive strength tests were conducted on these specimens, revealing that the optimal CS content ranged between 20 % and 40 %. Overall, FA had minimal impact on compressive strength, but it contributed to increased compressive strength in the specimens at later ages. Subsequently, microscopic characterization of the hydration products was performed using X-ray Diffraction (XRD), Fourier Transform Infrared (FTIR), Differential Thermal Analysis (DTA), Scanning Electron Microscope (SEM), and Energy Dispersive Spectrometer (EDS). The hydration products were identified as predominantly composed of calcium silicate hydrate. The quality and defects in the microstructure of gel products from various specimen formulations were compared to elucidate differences in macroscopic performance. Finally, the hydration process mechanism diagram of alkali-activated materials was presented to illustrate the stimulation and formation of gel products, primarily composed of C-S-H. This diagram revealed the principles behind the action of alkali-activated cementitious materials. The proposed design and testing methodology for the GGBS-FA-CS system in this study had certain reference significance for research in the direction of alkali-activated solid waste cementitious materials.

Starting in 2015, the widespread prevalence of hydropericardium-hepatitis syndrome (HHS) has led to considerable financial losses within China’s poultry farming industry. In this study, pathogenicity assessments, whole-genome sequencing, and analyses were conducted on 10 new isolates of the novel genotype FAdV-4 during a HHS outbreak in Guangxi Province, China, from 2019 to 2020. The results indicated that strains GX2019-010 to GX2019-013 and GX2019-015 to GX2019-018 were highly virulent, while strain GX2020-019 exhibited moderate virulence. Strain GX2019-014 was characterized as a wild-type strain with low virulence, displaying no pathogenic effects when 0.5 mL containing 106 TCID50 virus was inoculated into the muscle of specific pathogen-free (SPF) chickens at 4 weeks of age, while 107 TCID50 and 108 TCID50 resulted in mortality rates of 80 and 100%, respectively. The whole genomes of strains GX2019-010 to GX2019-013, GX2019-015 to GX2019-018, and GX2020-019 showed high homology with other Chinese newly emerging highly pathogenic FAdV-4 strains, whereas GX2019-014 was closer to nonmutant strains and shared the same residues with known nonpathogenic strains (B1-7, KR5, and ON1) at positions 219AA and 380AA of the Fiber-2 protein. Our work enriches the research on prevalent strains of FAdV-4 in China, expands the knowledge on the virulence diversity of the novel genotype FAdV-4, and provides valuable reference material for further investigations into the key virulence-associated genetic loci of FAdV-4.

RFID-based human activity recognition (HAR) attracts attention due to its convenience, non-invasiveness, and privacy protection. Existing RFID-based HAR methods use modeling, CNN, or LSTM to extract features effectively. Still, they have shortcomings: 1) requiring complex hand-crafted data cleaning processes and 2) only addressing single-person activity recognition based on specific RF signals. To solve these problems, this paper proposes a novel device-free method based on Time-streaming Multiscale Transformer called TransTM. This model leverages the Transformer's powerful data fitting capabilities to take raw RFID RSSI data as input without pre-processing. Concretely, we propose a multiscale convolutional hybrid Transformer to capture behavioral features that recognizes single-human activities and human-to-human interactions. Compared with existing CNN- and LSTM-based methods, the Transformer-based method has more data fitting power, generalization, and scalability. Furthermore, using RF signals, our method achieves an excellent classification effect on human behavior-based classification tasks. Experimental results on the actual RFID datasets show that this model achieves a high average recognition accuracy (99.1%). The dataset we collected for detecting RFID-based indoor human activities will be published.

Abstract An enzyme-free sandwich amperometric immunosensor based on bimetallic Pt/Ag nanoparticle (Pt/AgNPs)-functionalized chitosan (Chi)-modified multiwalled carbon nanotubes (MWCNTs) as dual signal amplifiers and Chi-modified MWCNTs (MWCNTs-Chi) as substrate materials was developed for ultrasensitive detection of fowl adenovirus group I (FAdV-I). MWCNTs have a large specific surface area, and many accessible active sites were formed after modification with Chi. Hence, MWCNTs-Chi, as a substrate material for modifying glassy carbon electrodes (GCEs), could immobilize more antibodies (fowl adenovirus group I-monoclonal antibody, FAdV-I/MAb). Multiple Pt/AgNPs were attached to the surface of MWCNTs-Chi to generate MWCNTs-Chi-Pt/AgNPs with high catalytic ability for the reaction of H2O2 and modified active sites for fowl adenovirus group I-polyclonal antibody (FAdV-I/PAb) binding. Amperometric i–t measurements were employed to characterize the recognizability of FAdV-I. Under optimal conditions, and the developed immunosensor exhibited a wide linear range (100.93 EID50 mL−1 to 103.43 EID50 mL−1), a low detection limit (100.67 EID50 mL−1) and good selectivity, reproducibility and stability. This immunosensor can be used in clinical sample detection.

Abstract Background Chromosomal microarray analysis (CMA) is a valuable tool in prenatal diagnosis for the detection of chromosome uniparental disomy (UPD). This retrospective study examines fetuses undergoing invasive prenatal diagnosis through Affymetrix CytoScan 750 K array analysis. We evaluated both chromosome G-banding karyotyping data and CMA results from 2007 cases subjected to amniocentesis. Results The detection rate of regions of homozygosity (ROH) ≥ 10 Mb was 1.8% (33/2007), with chromosome 11 being the most frequently implicated (17.1%, 6/33). There were three cases where UPD predicted an abnormal phenotype based on imprinted gene expression. Conclusion The integration of UPD detection by CMA offers a more precise approach to prenatal genetic diagnosis. CMA proves effective in identifying ROH and preventing the birth of children affected by imprinting diseases.

Threshold selection is challenging when analyzing tail data with a generalized Pareto distribution. Data below the threshold was not used in the model, resulting in incomplete characterization of the whole data. This paper applied the Gamma distribution, Weibull distribution, and lognormal distribution to fit the central data separately, and a generalized Pareto distribution (GPD) was used to analyze the tail data. In such composite models, the thresholds are estimated directly as parameters. We proposed an empirical distribution function-based parameter estimation method. The absolute value of the difference between the empirical distribution function and the composite distribution function was used as a loss function to obtain an estimate of the parameter. This parameter estimation method is suitable for complex multiparameter distributions. The estimation method based on the empirical distribution function was verified to be feasible through simulation studies. The composite model and the estimation method based on the empirical distribution function were applied to study the earthquake magnitude data to provide a reference for earthquake hazard analysis.

Fowl adenovirus serotype 4 (FAdV-4) outbreaks have caused significant economic losses in the Chinese poultry industry since 2015. The relationships among viral structural proteins in infected hosts are relatively unknown. To explore the role of different parts of the fiber-1 protein in FAdV-4-infected hosts, we truncated fiber-1 into fiber-1-Δ1 (73–205 aa) and fiber-1-Δ2 (211–412 aa), constructed pEF1α-HA-fiber-1-Δ1 and pEF1α-HA-fiber-1-Δ2 and then transfected them into leghorn male hepatocyte (LMH) cells. After FAdV-4 infection, the roles of fiber-1-Δ1 and fiber-1-Δ2 in the replication of FAdV-4 were investigated, and transcriptome sequencing was performed. The results showed that the fiber-1-Δ1 and fiber-1-Δ2 proteins were the shaft and knob domains, respectively, of fiber-1, with molecular weights of 21.4 kDa and 29.6 kDa, respectively. The fiber-1-Δ1 and fiber-1-Δ2 proteins were mainly localized in the cytoplasm of LMH cells. Fiber-1-Δ2 has a greater ability to inhibit FAdV-4 replication than fiber-1-Δ1, and 933 differentially expressed genes (DEGs) were detected between the fiber-1-Δ1 and fiber-1-Δ2 groups. Functional analysis revealed these DEGs in a variety of biological functions and pathways, such as the phosphoinositide 3-kinase–protein kinase b (PI3K–Akt) signaling pathway, the mitogen-activated protein kinase (MAPK) signaling pathway, cytokine–cytokine receptor interactions, Toll-like receptors (TLRs), the Janus tyrosine kinase–signal transducer and activator of transcription (Jak–STAT) signaling pathway, the nucleotide-binding oligomerization domain (NOD)-like receptors (NLRs) signaling pathway, and other innate immune pathways. The mRNA expression levels of type I interferons (IFN-α and INF-β) and proinflammatory cytokines (IL-1β, IL-6 and IL-8) were significantly increased in cells overexpressing the fiber-1-Δ2 protein. These results demonstrate the role of the knob domain of the fiber-1 (fiber-1-Δ2) protein in FAdV-4 infection and provide a theoretical basis for analyzing the function of the fiber-1 protein of FAdV-4.

The cultivated Echinochloa frumentacea (Roxb.) Link and Echinochloa crusgalli (L.) Beauv. var. mitis (Pursh) Peter are two valuable grass species that are widely used in improving saline-alkali soil. Here we conducted a pot experiment combined with roots morphological analysis to investigate the adaptability of grass roots to saline stress environments, with cultivated E. frumentacea and E. crusgalli being subjected to salt treatments of 0 (CK), 100, 220, and 340 mmoL·L−1. Results indicated that E. frumentacea had longer primary roots with fewer root hairs and lower local branching density than E. crusgalli, with the root volume of E. frumentacea being 1.43 times greater than that of E. crusgalli. The aboveground biomass of both grasses decreased significantly (p < 0.05) with increasing salt concentrations, whereas the root-to-shoot ratio exhibited the opposite trend, suggesting the preferential allocation of photosynthetic products to the roots under salt stress. The total length, surface area, and tip number of fine roots and the growth of coarse roots (d > 2.00 mm) showed significant differences (p < 0.05) between the two grass species. Different concentrations of salt stress had inconsistent effects on the biomass and radial growth of roots for grasses. The cultivated E. frumentacea seems to adopt an adapt strategy of gradually increasing its root thickness, root hairs, and root density under increasing salt stress. E. crusgalli, on the other hand, employed a strategy of increasing root length, maintaining uniform thickness, and developing root hairs.

WRKY transcription factors constitute one of the largest plant-specific gene families, regulating various aspects of plant growth, development, physiological processes, and responses to abiotic stresses. This study aimed to comprehensively analyze the WRKY gene family of yam (Dioscorea opposita Thunb.), to understand their expression patterns during the growth and development process and their response to different treatments of yam and analyze the function of DoWRKY71 in detail. A total of 25 DoWRKY genes were identified from the transcriptome of yam, which were divided into six clades (I, IIa, IIc, IId, IIe, III) based on phylogenetic analysis. The analysis of conserved motifs revealed 10 motifs, varying in length from 16 to 50 amino acids. Based on real-time quantitative PCR (qRT-PCR) analysis, DoWRKY genes were expressed at different stages of growth and development and responded differentially to various abiotic stresses. The expression level of DoWRKY71 genes was up-regulated in the early stage and then down-regulated in tuber enlargement. This gene showed responsiveness to cold and abiotic stresses, such as abscisic acid (ABA) and methyl jasmonate (MeJA). Therefore, further study was conducted on this gene. Subcellular localization analysis revealed that the DoWRKY71 protein was localized in the nucleus. Moreover, the overexpression of DoWRKY71 enhanced the cold tolerance of transgenic tobacco and promoted ABA mediated stomatal closure. This study presents the first systematic analysis of the WRKY gene family in yam, offering new insights for studying WRKY transcription factors in yam. The functional study of DoWRKY71 lays theoretical foundation for further exploring the regulatory function of the DoWRKY71 gene in the growth and development related signaling pathway of yam.

BackgroundCarotid artery atherosclerosis is a major cause of ischemic stroke, and ischemic stroke is the leading cause of morbidity and mortality worldwide. Unfortunately, the reason for the build-up of atherosclerosis plaque is unknown. The miRNA-29c was reported to promote the phenotype transformation of vascular smooth muscle cells (VSMCs) in diabetes mice, eventually leading to plaque formation and bleeding. However, such studies are rare and limited to animal experiments.MethodsIn our study, 40 patients were divided into a diabetic mellitus (DM) group and a non-DM group according to whether they were diagnosed with DM. Then, the real-time quantitative PCR was applied to examine the miRNA-29c level in human carotid plaque tissue derived from 40 subjects receiving carotid endarterectomy.ResultsBriefly, diabetes patients had a decreased miRNA-29c level as compared with non-DM subjects, and this comparison was statistically significant (P = 0.02). Notably, variable miRNA-29c level was negatively associated with HbA1c level, although no statistical significance was observed. Moreover, there was an increased miRNA-29c level in patients with cerebral stroke.ConclusionCollectively, the miRNA-29c level in the carotid plaque is closely associated with DM and cerebral stroke, which may contribute to atherosclerosis formation.

Carbapenem-resistant Escherichia coli (E. coli) strains are widely distributed and spreading rapidly, creating significant challenges for clinical therapeutics. NDM-5, a novel mutant of New Delhi Metallo-β-Lactamase-1 (NDM-1), exhibits high hydrolase activity toward carbapenems. Since the genetic backgrounds of clinically isolated carbapenem-resistant E. coli are heterogeneous, it is difficult to accurately evaluate the impact of blaNDM–5 on antibiotic resistance. Herein, E. coli BL21 was transformed with a plasmid harboring blaNDM–5, and the resultant strain was named BL21 (pET-28a-blaNDM–5). Consistent with the findings of previous studies, the introduction of exogenous blaNDM–5 resulted in markedly greater resistance of E. coli to multiple β-lactam antibiotics. Compared with BL21 (pET-28a), BL21 (pET-28a-blaNDM–5) exhibited reduced motility but a significant increase in biofilm formation capacity. Furthermore, transcriptome sequencing was conducted to compare the transcriptional differences between BL21 (pET-28a) and BL21 (pET-28a-blaNDM–5). A total of 461 differentially expressed genes were identified, including those related to antibiotic resistance, such as genes associated with the active efflux system (yddA, mcbR and emrY), pili (csgC, csgF and fimD), biofilm formation (csgD, csgB and ecpR) and antioxidant processes (nuoG). Finally, the pGS21a plasmid harboring blaNDM–5 was transformed into E. coli Rosetta2, after which the expression of the NDM-5 protein was induced using isopropyl-β-D-thiogalactoside (IPTG). Using glutathione-S-transferase (GST) pull-down assays, total proteins from E. coli were scanned to screen out 82 proteins that potentially interacted with NDM-5. Our findings provide new insight into the identified proteins to identify potential antibiotic targets and design novel inhibitors of carbapenem-resistant bacteria.

Chicken parvovirus (ChPV) infection can cause runting-stunting syndrome (RSS) in chickens. There is currently no commercially available vaccine for controlling ChPV, and ChPV infection in chickens is widespread globally. The rapid detection of ChPV is crucial for promptly capturing epidemiological data on ChPV. Two monoclonal antibodies (mAbs), 1B12 and 2B2, against the ChPV NS1 protein were generated. A double-antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) was developed for detecting ChPV based on the mAb 1B12 and an anti-chicken polyclonal antibody against the ChPV NS1 protein. The detection limit for the ChPV recombinant pET32a-NS1 protein was approximately 31.2 ng/mL. A total of 192 throat and cloaca swab samples were analyzed for ChPV by the established DAS-ELISA and nested PCR methods. The concordance rate between the DAS-ELISA and the nested PCR method was 89.1%. The DAS-ELISA can detect the ChPV antigen without any cross-reaction with FAdV-4, FAdV-1, NDV, AIV, MS, CIAV, aMPV, EDSV, IBV, or AGV2. The method also has high repeatability, with a coefficient of variation (CV) of less than 5%. These findings indicate that the DAS-ELISA exhibits high accuracy, good sensitivity, and specificity, making it suitable for viral detection, field surveillance, and epidemiological studies.

Interferon-inducible transmembrane protein 3 (IFITM3) is an antiviral factor that plays an important role in the host innate immune response against viruses. Previous studies have shown that IFITM3 is upregulated in various tissues and organs after avian reovirus (ARV) infection, which suggests that IFITM3 may be involved in the antiviral response after ARV infection. In this study, the chicken IFITM3 gene was cloned and analyzed bioinformatically. Then, the role of chicken IFITM3 in ARV infection was further explored. The results showed that the molecular weight of the chicken IFITM3 protein was approximately 13 kDa. This protein was found to be localized mainly in the cytoplasm, and its protein structure contained the CD225 domain. The homology analysis and phylogenetic tree analysis showed that the IFITM3 genes of different species exhibited great variation during genetic evolution, and chicken IFITM3 shared the highest homology with that of Anas platyrhynchos and displayed relatively low homology with those of birds such as Anser cygnoides and Serinus canaria. An analysis of the distribution of chicken IFITM3 in tissues and organs revealed that the IFITM3 gene was expressed at its highest level in the intestine and in large quantities in immune organs, such as the bursa of Fabricius, thymus and spleen. Further studies showed that the overexpression of IFITM3 in chicken embryo fibroblasts (DF-1) could inhibit the replication of ARV, whereas the inhibition of IFITM3 expression in DF-1 cells promoted ARV replication. In addition, chicken IFITM3 may exert negative feedback regulatory effects on the expression of TBK1, IFN-γ and IRF1 during ARV infection, and it is speculated that IFITM3 may participate in the innate immune response after ARV infection by negatively regulating the expression of TBK1, IFN-γ and IRF1. The results of this study further enrich the understanding of the role and function of chicken IFITM3 in ARV infection and provide a theoretical basis for an in-depth understanding of the antiviral mechanism of host resistance to ARV infection.

H5, H7 and H9 are the most important subtypes of avian influenza viruses (AIVs), and nine neuraminidase (NA) subtypes (N1–N9) of AIVs have been identified in poultry. A method that can simultaneously detect H5, H7, H9 and the nine NA subtypes of AIVs would save time and effort. In this study, 13 pairs of primers, including 12 pairs of subtype-specific primers for detecting particular subtypes (H5, H7, H9 and N1–N9) and one pair of universal primers for detecting all subtypes of AIVs, were designed and screened. The 13 pairs of primers were mixed in the same reaction, and the 13 target genes were simultaneously detected. A GeXP assay using all 13 pairs of primers to simultaneously detect H5, H7, H9 and the nine NA subtypes of AIVs was developed. The GeXP assay showed specific binding to the corresponding target genes for singlet and multiplex templates, and no cross-reactivity was observed between AIV subtypes and other related avian pathogens. Detection was observed even when only 102 copies of the 13 target genes were present. This study provides a high-throughput, rapid and labor-saving GeXP assay for the simultaneous rapid identification of three HA subtypes (H5, H7 and N9) and nine NA subtypes (N1–N9) of AIVs.

F High School is collaborating with the SDGs Design School of Faculty of Design, Kyushu University to conduct group work using design thinking during the "Period for Inquiry-Based Cross-Disciplinary Study." In this class, students formulate their own problems and think of solutions to those problems. In order for learning to be independent, interactive, and profound as an inquiry activity, it is important to have empathy for the issues. In this study, we examined the reasons and backgrounds behind the students' choice of issues to analyze factors that enhance empathy towards those issues. [ABSTRACT FROM AUTHOR]

There are several types of relations between information assets of two firms, among which substitutable relation is such that even when one of the firms is successfully breached by one hacker, both firms would incur loss and the hacker gets benefit. This paper examines security investment and information sharing of two substitutable firms through constructing a game-theoretic model between these firms and one hacker. We derive the following interesting results: (a) the firm with more efficient security investment suffers weaker cyber-attack from the hacker because the rational hacker would switch its emphasis to the less efficient firm; (b) one firm’s aggregate defense increases with its unit investment cost for the positive interdependence when this cost remains high due to more shared information and enhanced security investment from the other firm; (c) although a widely-used compensation mechanism can urge the firms to invest more when security loss remains low, it increases their expected costs because of the excess investment; (d) unlike simultaneous game, each firm’s aggregate defense always increases with the unit cost of cyber-attacks under sequential game since the hacker has an advantage of learning the firms’ security decisions. These results give fresh managerial guidelines to security experts of firms. [ABSTRACT FROM AUTHOR]

[Objective] Enhancing the coupling coordination of regional innovation-ecology-economy stands as a crucial avenue for China to attain high-quality development. This study assessed the innovation-ecology-economy coupling coordination level under the new developmental stages. It examined the coupling coordination path that emerges through the interaction and amalgamation of the constituent elements intrinsic to the innovation-ecology-economy system, approached from a combinational standpoint. Furthermore, the study aimed to clarify the principal course that will shape the forthcoming advancement of the coupling coordination of these three systems. [Methods] Using a sample of 30 Chinese provinces with data spanning from 2011 to 2020, this study integrated the new development concept to develop an evaluation framework for the composite innovation-ecology-economy system. From an intra-system perspective, the research employed a dynamic qualitative comparative analysis to identify the combination paths within the composite system that engender high coupling coordination levels, alongside their dynamic patterns of evolution. [Results] (1) In the study period, individual components of the system were insufficient for achieving coupling coordination development. But the interplay and alignment of components generated four combination paths of high-level coupling coordination, which can be categorized as “innovation and application of energy conservation and emission reduction for development” and “innovation and cultivation of environmental protection governance efficiency enhancement”, with the characteristics of “all roads lead to Rome”. (2) The role of applied scientific and technological innovation, and industrial structure optimization and upgrading in promoting regional coupled and coordinated development had weakened from the 12th Five-Year Plan to the 13th Five-Year Plan period. Instead, the core driving factors shifted to basic innovation, economic development quality catch-up, and sharing of development results. [Conclusion] Considerable potential for enhancement remains within China’s regional innovation-ecology-economy system for coupled and coordinated development. To foster further improvement, a concerted effort is needed to bolster interplay among the system’s constituent elements, addressing the deficiencies and vulnerabilities within sub-systems. Emphasis should be placed on bolstering scientific and technological research and development, advancing quality-driven catch-up initiatives, and cultivating common prosperity.

Multi-beam-pumped optical parametric amplification (OPA) may offer a solution for overcoming the limitations on the repetition rate and average power of ultraintense femtosecond lasers. However, multi-beam pumping scheme encounters challenges due to low conversion efficiency caused by parametric diffraction and inter-channel crosstalk, which are attributed to the presence of multi-idler-waves. This paper introduces and explores multi-beam-pumped quasi-parametric amplification (QPA) as an alternative approach to multi-beam-pumped OPA. We theoretically demonstrate that strong idler dissipation can significantly reduce inter-channel crosstalk and parametric diffraction in a two-beam-pumped QPA. These findings highlight the potential of multibeam-pumped QPA for efficiently amplifying femtosecond laser pulses to high average power levels with robustness.