Search

Alzheimer's disease (AD) is a chronic neurodegenerative disorder and the leading cause of dementia, significantly impacting cost, mortality, and burden worldwide. The advent of high-throughput omics technologies, such as genomics, transcriptomics, proteomics, and epigenomics, has revolutionized the molecular understanding of AD. Conventional AI approaches typically require the completion of all omics data at the outset to achieve optimal AD diagnosis, which are inefficient and may be unnecessary. To reduce the clinical cost and improve the accuracy of AD diagnosis using multi-omics data, we propose a novel staged graph convolutional network with uncertainty quantification (SGUQ). SGUQ begins with mRNA and progressively incorporates DNA methylation and miRNA data only when necessary, reducing overall costs and exposure to harmful tests. Experimental results indicate that 46.23% of the samples can be reliably predicted using only single-modal omics data (mRNA), while an additional 16.04% of the samples can achieve reliable predictions when combining two omics data types (mRNA + DNA methylation). In addition, the proposed staged SGUQ achieved an accuracy of 0.858 on ROSMAP dataset, which outperformed existing methods significantly. The proposed SGUQ can not only be applied to AD diagnosis using multi-omics data but also has the potential for clinical decision-making using multi-viewed data. Our implementation is publicly available at https://github.com/chenzhao2023/multiomicsuncertainty., Comment: 20 pages, 2 figures

We propose a novel unsupervised cross-modal homography estimation framework, based on interleaved modality transfer and self-supervised homography prediction, named InterNet. InterNet integrates modality transfer and self-supervised homography estimation, introducing an innovative interleaved optimization framework to alternately promote both components. The modality transfer gradually narrows the modality gaps, facilitating the self-supervised homography estimation to fully leverage the synthetic intra-modal data. The self-supervised homography estimation progressively achieves reliable predictions, thereby providing robust cross-modal supervision for the modality transfer. To further boost the estimation accuracy, we also formulate a fine-grained homography feature loss to improve the connection between two components. Furthermore, we employ a simple yet effective distillation training technique to reduce model parameters and improve cross-domain generalization ability while maintaining comparable performance. Experiments reveal that InterNet achieves the state-of-the-art (SOTA) performance among unsupervised methods, and even outperforms many supervised methods such as MHN and LocalTrans.

Tracking any point based on image frames is constrained by frame rates, leading to instability in high-speed scenarios and limited generalization in real-world applications. To overcome these limitations, we propose an image-event fusion point tracker, FE-TAP, which combines the contextual information from image frames with the high temporal resolution of events, achieving high frame rate and robust point tracking under various challenging conditions. Specifically, we designed an Evolution Fusion module (EvoFusion) to model the image generation process guided by events. This module can effectively integrate valuable information from both modalities operating at different frequencies. To achieve smoother point trajectories, we employed a transformer-based refinement strategy that updates the point's trajectories and features iteratively. Extensive experiments demonstrate that our method outperforms state-of-the-art approaches, particularly improving expected feature age by 24$\%$ on EDS datasets. Finally, we qualitatively validated the robustness of our algorithm in real driving scenarios using our custom-designed high-resolution image-event synchronization device. Our source code will be released at https://github.com/ljx1002/FE-TAP.

Mamba and Vision Mamba (Vim) models have shown their potential as an alternative to methods based on Transformer architecture. This work introduces Fast Mamba for Vision (Famba-V), a cross-layer token fusion technique to enhance the training efficiency of Vim models. The key idea of Famba-V is to identify and fuse similar tokens across different Vim layers based on a suit of cross-layer strategies instead of simply applying token fusion uniformly across all the layers that existing works propose. We evaluate the performance of Famba-V on CIFAR-100. Our results show that Famba-V is able to enhance the training efficiency of Vim models by reducing both training time and peak memory usage during training. Moreover, the proposed cross-layer strategies allow Famba-V to deliver superior accuracy-efficiency trade-offs. These results all together demonstrate Famba-V as a promising efficiency enhancement technique for Vim models., Comment: Camera ready version of ECCV 2024 Workshop on Computational Aspects of Deep Learning (Best Paper Award)

We propose a novel unsupervised cross-modal homography estimation framework based on intra-modal Self-supervised learning, Correlation, and consistent feature map Projection, namely SCPNet. The concept of intra-modal self-supervised learning is first presented to facilitate the unsupervised cross-modal homography estimation. The correlation-based homography estimation network and the consistent feature map projection are combined to form the learnable architecture of SCPNet, boosting the unsupervised learning framework. SCPNet is the first to achieve effective unsupervised homography estimation on the satellite-map image pair cross-modal dataset, GoogleMap, under [-32,+32] offset on a 128x128 image, leading the supervised approach MHN by 14.0% of mean average corner error (MACE). We further conduct extensive experiments on several cross-modal/spectral and manually-made inconsistent datasets, on which SCPNet achieves the state-of-the-art (SOTA) performance among unsupervised approaches, and owns 49.0%, 25.2%, 36.4%, and 10.7% lower MACEs than the supervised approach MHN. Source code is available at https://github.com/RM-Zhang/SCPNet., Comment: Accepted by ECCV 2024

Automatic radiology report generation can significantly benefit the labor-intensive process of report writing by radiologists, especially for 3D radiographs like CT scans, which are crucial for broad clinical diagnostics yet underexplored compared to 2D radiographs. Existing methods often handle 3D volumes either slice-wise or with aggressive downsampling due to current GPU memory limitations, which results in a loss of the inherent 3D nature and critical details. To overcome these issues, we introduce a novel framework that efficiently and effectively generates radiology reports for high-resolution (HR) 3D volumes, based on large language models (LLMs). Specifically, our framework utilizes low-resolution (LR) visual tokens as queries to mine information from HR tokens, preserving detailed HR information while reducing computational costs by only processing HR informed LR visual queries. Further benefiting the field, we curate and release BIMCV-RG, a new dataset with 5,328 HR 3D volumes and paired reports, establishing the first benchmarks for report generation from 3D HR medical images. Our method consistently surpasses existing methods on this benchmark across three different settings: normal-resolution, high-resolution inputs, and zero-shot domain transfer, all at an acceptable computational cost, trainable on a single A100-80G.

Despite advancements in medical care, hip fractures impose a significant burden on individuals and healthcare systems. This paper focuses on the prediction of hip fracture risk in older and middle-aged adults, where falls and compromised bone quality are predominant factors. We propose a novel staged model that combines advanced imaging and clinical data to improve predictive performance. By using CNNs to extract features from hip DXA images, along with clinical variables, shape measurements, and texture features, our method provides a comprehensive framework for assessing fracture risk. A staged machine learning-based model was developed using two ensemble models: Ensemble 1 (clinical variables only) and Ensemble 2 (clinical variables and DXA imaging features). This staged approach used uncertainty quantification from Ensemble 1 to decide if DXA features are necessary for further prediction. Ensemble 2 exhibited the highest performance, achieving an AUC of 0.9541, an accuracy of 0.9195, a sensitivity of 0.8078, and a specificity of 0.9427. The staged model also performed well, with an AUC of 0.8486, an accuracy of 0.8611, a sensitivity of 0.5578, and a specificity of 0.9249, outperforming Ensemble 1, which had an AUC of 0.5549, an accuracy of 0.7239, a sensitivity of 0.1956, and a specificity of 0.8343. Furthermore, the staged model suggested that 54.49% of patients did not require DXA scanning. It effectively balanced accuracy and specificity, offering a robust solution when DXA data acquisition is not always feasible. Statistical tests confirmed significant differences between the models, highlighting the advantages of the advanced modeling strategies. Our staged approach could identify individuals at risk with a high accuracy but reduce the unnecessary DXA scanning. It has great promise to guide interventions to prevent hip fractures with reduced cost and radiation., Comment: 29 pages, 5 figures, 6 tables

Most recent multispectral object detectors employ a two-branch structure to extract features from RGB and thermal images. While the two-branch structure achieves better performance than a single-branch structure, it overlooks inference efficiency. This conflict is increasingly aggressive, as recent works solely pursue higher performance rather than both performance and efficiency. In this paper, we address this issue by improving the performance of efficient single-branch structures. We revisit the reasons causing the performance gap between these structures. For the first time, we reveal the information interference problem in the naive early-fusion strategy adopted by previous single-branch structures. Besides, we find that the domain gap between multispectral images, and weak feature representation of the single-branch structure are also key obstacles for performance. Focusing on these three problems, we propose corresponding solutions, including a novel shape-priority early-fusion strategy, a weakly supervised learning method, and a core knowledge distillation technique. Experiments demonstrate that single-branch networks equipped with these three contributions achieve significant performance enhancements while retaining high efficiency. Our code will be available at \url{https://github.com/XueZ-phd/Efficient-RGB-T-Early-Fusion-Detection}., Comment: This paper has been accepted by IEEE T-IV journal. Please jump to External DOI to view the official version

Vision-based Semantic Scene Completion (SSC) has gained much attention due to its widespread applications in various 3D perception tasks. Existing sparse-to-dense approaches typically employ shared context-independent queries across various input images, which fails to capture distinctions among them as the focal regions of different inputs vary and may result in undirected feature aggregation of cross-attention. Additionally, the absence of depth information may lead to points projected onto the image plane sharing the same 2D position or similar sampling points in the feature map, resulting in depth ambiguity. In this paper, we present a novel context and geometry aware voxel transformer. It utilizes a context aware query generator to initialize context-dependent queries tailored to individual input images, effectively capturing their unique characteristics and aggregating information within the region of interest. Furthermore, it extend deformable cross-attention from 2D to 3D pixel space, enabling the differentiation of points with similar image coordinates based on their depth coordinates. Building upon this module, we introduce a neural network named CGFormer to achieve semantic scene completion. Simultaneously, CGFormer leverages multiple 3D representations (i.e., voxel and TPV) to boost the semantic and geometric representation abilities of the transformed 3D volume from both local and global perspectives. Experimental results demonstrate that CGFormer achieves state-of-the-art performance on the SemanticKITTI and SSCBench-KITTI-360 benchmarks, attaining a mIoU of 16.87 and 20.05, as well as an IoU of 45.99 and 48.07, respectively. Remarkably, CGFormer even outperforms approaches employing temporal images as inputs or much larger image backbone networks., Comment: NIPS 2024 Spotlight

Cross-spectral image guided denoising has shown its great potential in recovering clean images with rich details, such as using the near-infrared image to guide the denoising process of the visible one. To obtain such image pairs, a feasible and economical way is to employ a stereo system, which is widely used on mobile devices. Current works attempt to generate an aligned guidance image to handle the disparity between two images. However, due to occlusion, spectral differences and noise degradation, the aligned guidance image generally exists ghosting and artifacts, leading to an unsatisfactory denoised result. To address this issue, we propose a one-stage transformer-based architecture, named SGDFormer, for cross-spectral Stereo image Guided Denoising. The architecture integrates the correspondence modeling and feature fusion of stereo images into a unified network. Our transformer block contains a noise-robust cross-attention (NRCA) module and a spatially variant feature fusion (SVFF) module. The NRCA module captures the long-range correspondence of two images in a coarse-to-fine manner to alleviate the interference of noise. The SVFF module further enhances salient structures and suppresses harmful artifacts through dynamically selecting useful information. Thanks to the above design, our SGDFormer can restore artifact-free images with fine structures, and achieves state-of-the-art performance on various datasets. Additionally, our SGDFormer can be extended to handle other unaligned cross-model guided restoration tasks such as guided depth super-resolution.

Electrocardiogram (ECG) is the primary non-invasive diagnostic tool for monitoring cardiac conditions and is crucial in assisting clinicians. Recent studies have concentrated on classifying cardiac conditions using ECG data but have overlooked ECG report generation, which is time-consuming and requires clinical expertise. To automate ECG report generation and ensure its versatility, we propose the Multimodal ECG Instruction Tuning (MEIT) framework, the first attempt to tackle ECG report generation with LLMs and multimodal instructions. To facilitate future research, we establish a benchmark to evaluate MEIT with various LLMs backbones across two large-scale ECG datasets. Our approach uniquely aligns the representations of the ECG signal and the report, and we conduct extensive experiments to benchmark MEIT with nine open-source LLMs using more than 800,000 ECG reports. MEIT's results underscore the superior performance of instruction-tuned LLMs, showcasing their proficiency in quality report generation, zero-shot capabilities, and resilience to signal perturbation. These findings emphasize the efficacy of our MEIT framework and its potential for real-world clinical application., Comment: Under review

The Minimum Covariance Determinant (MCD) method is a widely adopted tool for robust estimation and outlier detection. In this paper, we introduce a new framework for model selection in MCD with spectral embedding based on the notion of stability. Our best subset algorithm leverages principal component analysis for dimension reduction, statistical depths for effective initialization, and concentration steps for subset refinement. Subsequently, we construct a bootstrap procedure to estimate the instability of the best subset algorithm. The parameter combination exhibiting minimal instability proves ideal for the purposes of high-dimensional outlier detection, while the instability path offers insights into the inlier/outlier structure. We rigorously benchmark the proposed framework against existing MCD variants and illustrate its practical utility on two spectra data sets and a cancer genomics data set.