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This paper introduces a refined and broadened version of decision-theoretic rough sets (DTRSs) named Generalized Sequential Decision-Theoretic Rough Set (GSeq-DTRS), which integrates the three-way decision (3WD) methodology. Operating through multiple levels, this iterative approach aims to comprehensively explore the boundary region. It introduces the concept of generalized granulation, departing from conventional equivalence-relation-based structures to incorporate similarity/tolerance relations. GSeq-DTRS addresses the limitations encountered by its predecessor, Seq-DTRS, particularly in managing sequential procedures and integrating new attributes. A notable advancement is its seamless handling of continuous-scale datasets through a defined Generalized Granular Structure (GGS), enabling classification across multiple levels without necessitating reduction of attributes. A refined version of conditional probability (CP), aligned with tolerance classes, enhances the approach, supported by a meticulously designed algorithm. Extensive experimental analysis conducted on two datasets sourced from https://www.kaggle.com demonstrates the efficacy of the procedure for both continuous and discrete datasets, effectively classifying probable elements into POS or NEG regions based on their membership. Unlike traditional Seq-DTRS, it does not require reduction of attributes at each new level. Additionally, the algorithm exhibits lower sensitivity to parametric values and yields results in fewer iterations. Thus, its potential impact on decision-making processes is readily apparent., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors. Published by Elsevier Ltd.)

The two-component system (TCS) gene family is among the most important signal transduction families in plants and is involved in the regulation of various abiotic stresses, cell growth and division. To understand the role of TCS genes in mango (Mangifera indica ), a comprehensive analysis of TCS gene family was carried out in mango leading to identification of 65 MiTCS genes. Phylogenetic analysis divided MiTCSs into three groups (histidine kinases, histidine-containing phosphotransfer proteins, and response regulators) and 11 subgroups. One tandem duplication and 23 pairs of segmental duplicates were found within the MiTCSs . Promoter analysis revealed that MiTCSs contain a large number of cis -elements associated with environmental stresses, hormone response, light signalling, and plant development. Gene ontology analysis showed their involvement in various biological processes and molecular functions, particularly signal transduction. Protein-protein interaction analysis showed that MiTCS proteins interacted with each other. The expression pattern in various tissues and under many stresses (drought, cold, and disease) showed that expression levels varied among various genes in different conditions. MiTCSs 3D structure predictions showed structural conservation among members of the same groups. This information can be further used to develop improved cultivars and will serve as a foundation for gaining more functional insights into the TCS gene family.

Situs inversus totalis (SIT), affecting 1 in 6,000 to 10,000 individuals, involves a complete reversal of chest and abdominal organs. About one-third of SIT cases coincide with primary ciliary dyskinesia, leading to diverse symptoms. Surgical challenges arise in procedures like liver transplantation and biliary interventions due to organ abnormalities. This case study explores cholecystitis in a patient with SIT, offering insights crucial for navigating complexities in treating this congenital anomaly. A 34-year-old Arab female, who was a known SIT case, came to the hospital complaining of abdominal pain in the left upper quadrant. After conducting a chest X-ray and an abdominal ultrasound, the patient was diagnosed with cholecystitis. She then underwent a planned cholecystectomy to remove her gallbladder. SIT presents challenges when it comes to procedures such as laparoscopic cholecystectomy (LC). Nevertheless, the proficiency of skilled surgeons, meticulous preoperative planning, and strict adherence to surgical principles render the execution of LC on patients with SIT both achievable and secure. The successful completion of over 120 cases serves as evidence of the adaptability and precision that can be achieved through surgery for individuals with SIT., Competing Interests: The authors have declared that no competing interests exist., (Copyright © 2024, Nassr et al.)

Background and Aim: Dietary supplements play pivotal roles in promoting productive and reproductive performance in ruminant animals. The aims of the present study were to evaluate the effects of extruded flaxseed and Salmate ® (Ballard Group, Inc, OH, USA) inclusion in diets on milk yield and composition, ruminal degradation and fermentation, and flow of fluids and digesta in lactating cattle., Materials and Methods: Six rumen-fistulated Holstein lactating cows were distributed to a 6 × 6 design of Latin square (L.S.). The groups were assorted into a control group fed a basal control diet and two treated groups fed diets containing extruded flaxseed (7.0%) or Salmate ® (25 g/head/day). The basal control, extruded flaxseed, and Salmate ® diets were formulated as isonitrogenous and isoenergetic. Each L.S. period of the group comprised 21 days, including 10 days for adaptation to the diet and 11 days for data sampling and recording., Results: Feed intake did not differ among the control, extruded flaxseed, and Salmate ® groups. Milk yield (kg) and protein and fat composition (%) were improved on feeding the extruded flaxseed diet compared with the Salmate ® and control diets. Extruded flaxseed or Salmate ® diet had no effect on the values of ruminal pH, ammonia, and volatile fatty acids except isobutyrate, which decreased in the Salmate ® group. Degradable efficiency and ruminal digestibility were significantly decreased with the inclusion of extruded flaxseed and/or Salmate ® in the diets. The extruded flaxseed and Salmate ® groups had a greater digesta passage rate than the control group. The extruded flaxseed and control groups had a greater liquid passage rate than the Salmate ® group., Conclusion: The inclusion of extruded flaxseed in the diet improved (p < 0.05) milk yield, milk composition, and milk Omega-6: Omega-3 ratio with no changes in ruminal fermentation, notable negative effects on degradable efficiency and ruminal digestibility., Competing Interests: The authors declare that they have no competing interests., (Copyright: © Al-Saiady, et al.)

The SPL gene family (for Squamosa Promoter-binding like Proteins) represents specific transcription factors that have significant roles in abiotic stress tolerance, development and the growth processes of different plants, including initiation of the leaf, branching and development of shoot and fruits. The SPL gene family has been studied in different plant species; however, its role is not yet fully explored in pigeon pea (Cajanus cajan ). In the present study, 11 members of the CcSPL gene family were identified in C. cajan . The identified SPLs were classified into nine groups based on a phylogenetic analysis involving SPL protein sequences from C. cajan , Arabidopsis thaliana , Cicer arietinum , Glycine max , Phaseolus vulgaris , Vigna unguiculata and Arachis hypogaea . Further, the identification of gene structure, motif analysis, domain analysis and presence of cis -regulatory elements in the SPL family members were studied. Based on RNA-sequencing data, gene expression analysis was performed, revealing that CcSPL2.1, 3 and 13A were significantly upregulated for salt-tolerance and CcSPL14 and 15 were upregulated in a salt-susceptible cultivar. Real-time qPCR validation indicated that CcSPL3, 4, 6 and 13A were upregulated under salt stress conditions. Therefore, molecular docking was performed against the proteins of two highly expressed genes (CcSPL3 and CcSPL14 ) with three ligands: abscisic acid, gibberellic acid and indole-3-acetic acid. Afterward, their binding affinity was obtained and three-dimensional structures were predicted. In the future, our study may open avenues for harnessing CcSPL genes in pigeon pea for enhanced abiotic stress resistance and developmental traits.

A comprehensive survey of mungbean-growing areas was conducted to observe leaf spot disease caused by Alternaria alternata. Alternaria leaf spot symptoms were observed on the leaves. Diversity of 50 genotypes of mungbean was assessed against A. alternata and data on pathological traits was subjected to cluster analysis. The results showed that genotypes of mungbean were grouped into four clusters based on resistance parameters under the influence of disease. The principal component biplot demonstrated that all the disease-related parameters (% disease incidence, % disease intensity, lesion area, and % of infection) were strongly correlated with each other. Alt a 1 gene that is precisely found in Alternaria species and is responsible for virulence and pathogenicity. Alt a 1 gene was amplified using gene specific primers. The isolated pathogen produced similar symptoms when inoculated on mungbean and tobacco. The sequence analysis of the internal transcribed spacer (ITS) region, a 600 bp fragment amplified using specific primers, ITS1 and ITS2 showed 100% identity with A. alternata. Potato virus X (PVX) -based silencing vector expressing Alt a 1 gene was constructed to control this pathogen through RNA interference in tobacco. Out of 50 inoculated plants, 9 showed delayed onset of disease. Furthermore, to confirm our findings at molecular level semi-quantitative reverse transcriptase polymerase chain reaction was used. Both phenotypic and molecular investigation indicated that RNAi induced through the VIGS vector was efficacious in resisting the pathogen in the model host, Tobacco (Nicotiana tabacum). To the best of our knowledge, this study has been reported for the first time.

The CRISPR/Cas9 system is a revolutionary technology for genome editing that allows for precise and efficient modifications of DNA sequences. The system is composed of two main components, the Cas9 enzyme and a guide RNA (gRNA). The gRNA is designed to specifically target a desired DNA sequence, while the Cas9 enzyme acts as molecular scissors to cut the DNA at that specific location. The cell then repairs the digested DNA, either through nonhomologous end joining (NHEJ) or homology-directed repair (HDR), resulting in either indels or precise modifications of DNA sequences with broad implications in biotechnology, agriculture, and medicine. This chapter provides a practical approach for utilizing CRISPR/Cas9 in precise genome editing, including identifying the target gene sequence, designing gRNA and protein (Cas9), and delivering the CRISPR components to target cells., (© 2024. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)