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Abstract Biochar is widely used for sediment remediation owing to its excellent adsorption properties and low carbon footprint. However, the impacts of biochar capping on phosphorus (P) bioavailability and mobility in the sediment are little known. In this study, the P mobilization processes in sediments capped with biochar were investigated by combining advanced high-resolution sampling techniques and microbiome analysis. The results showed that biochar is a double-edged sword for the sediment P release, depending on the application dosage and the capping time. In the short term (30 days), 2-cm biochar capping decreased the release flux of soluble reactive phosphorus (SRP) by 73.1%, whereas the 1-cm biochar capping significantly increased the release flux of SRP by 51.0%. After aging of biochar (80 days), the resupply capacity of sediment P was improved, resulting in increases of more than 33.7% and 121.5% in the release fluxes of SRP in the 1-cm and 2-cm capping groups, respectively, compared to the control group. Chemisorption played a pivotal role in regulating the levels of SRP, particularly during the short-term capping period. And more biochar can provide more adsorption sites on P. The P mobilization increase could be attributed to P desorption from biochar after biochar aging. Furthermore, biochar capping intensified the microbial-mediated iron reduction and organic matter decomposition, which enhanced P mobility. Our study highlights the importance of biochar application dosage and the capping time in sediment remediation, providing a scientific basis for the optimization of biochar capping techniques. Graphical Abstract