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CONTEXT: Understanding research collaboration in diverse scientific communities is key to building global agricultural research systems that support the UN Sustainable Development Goals. Characterizing collaboration patterns can inform decisions to enhance the structure and dynamics of research programs. OBJECTIVE: We introduce a new analytic framework for evaluating collaborative research networks based on scientific publications, and an associated conceptual framework for the role of research networks in achieving societal goals. We analyzed two CGIAR Research Programs: Grain Legumes and Dryland Cereals (GLDC) and Roots, Tubers and Bananas (RTB). The analysis provides a multi-dimensional perspective on a set of key questions related to research team composition, research management structures, and performance of scientific publications. METHODS: We quantified network structures of research collaborations at the level of authors, institutions, countries, and management structures, including use of temporal exponential random graph models. We used regression models to understand the associations between the characteristics of authors and publications, and the corresponding citation rates and Altmetric Attention Scores. RESULTS AND CONCLUSIONS: We identified key network hubs in the collaboration networks of both CGIAR programs. The proportion of women as authors in publications was less than a third, with a low likelihood of co-authorship between women. Institutional hubs were identified by institutional categories; these were often institutions that are considered CGIAR program “participants”, and a few were “planning partners”. For both GLDC and RTB, the countries that were the focus of most research coincided with the program's priority countries. Most international collaborations occurred between institutions headquartered in Global South countries, but most intercontinental collaborations occurred between Global South and Global North countries. Most institution