110 results on '"Marine Institute"'
Search Results
2. Ecotype-Specific and Correlated Seasonal Responses of Biomass Production, Non-Structural Carbohydrates, and Fatty Acids in Zostera marina
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University of Galway, Alexander von Humboldt Foundation, Environmental Protection Agency (Ireland), Marine Institute (Ireland), Agencia Estatal de Investigación (España), Beca-Carretero, Pedro, Marín Pérez, Clara, Azcárate-García, Tomás, Cara, Claudia L., Brun, Fernando G., Stengel, Dagmar B., University of Galway, Alexander von Humboldt Foundation, Environmental Protection Agency (Ireland), Marine Institute (Ireland), Agencia Estatal de Investigación (España), Beca-Carretero, Pedro, Marín Pérez, Clara, Azcárate-García, Tomás, Cara, Claudia L., Brun, Fernando G., and Stengel, Dagmar B.
- Abstract
Seagrasses, which are marine flowering plants, provide numerous ecological services and goods. Zostera marina is the most widely distributed seagrass in temperate regions of the northern hemisphere, tolerant of a wide range of environmental conditions. This study aimed to (i) examine seasonal trends and correlations between key seagrass traits such as biomass production and biochemical composition, and (ii) compare seasonal adaptation of two ecotypes of Z. marina exposed to similar environmental conditions on the west coast of Ireland. During summer, plants accumulated higher levels of energetic compounds and levels of unsaturated fatty acids (FAs) decreased. Conversely, the opposite trend was observed during colder months. These findings indicate a positive seasonal correlation between the production of non-structural carbohydrates and saturated fatty acids (SFAs), suggesting that seagrasses accumulate and utilize both energetic compounds simultaneously during favorable and unfavorable environmental conditions. The two ecotypes displayed differential seasonal responses by adjusting plant morphology and production, the utilization of energetic reserves, and modulating unsaturation levels of fatty acids in seagrass leaves. These results underscore the correlated seasonal responses of key compounds, capturing ecotype-specific environmental adaptations and ecological strategies, emphasizing the robust utility of these traits as a valuable eco-physiological tool
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- 2024
3. Evolution of Size-Fecundity Relationship in Medaka Fish From Different Latitudes.
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Fujimoto S, Sumarto BKA, Murase I, Mokodongan DF, Myosho T, Yagi M, Ansai S, Kitano J, Takeda S, and Yamahira K
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In most fishes, the number of offspring increases with maternal body size. Although this size-fecundity relationship often varies among species as a result of the coevolution of life-history traits, the genetic basis of such size-fecundity relationships remains unclear. We explored the genetic basis underlying this size-fecundity relationship in two small medaka species, Oryzias latipes and O. sakaizumii. Our findings showed that O. sakaizumii has a higher fecundity than O. latipes, and quantitative trait locus analysis using interspecific F
2 hybrids showed that chromosome 23 is linked to the size-fecundity relationship. In particular, the genes igf1 and lep-b in this region are known to be associated with life-history traits, including somatic growth, gonad maturation, and progeny numbers in various taxa. Because O. sakaizumii is distributed at higher latitudes and has a shorter spawning season than O. latipes in the wild, we propose that the relatively high fecundity observed in O. sakaizumii is an adaptation to high latitudes. We also discuss the potential ecological ramifications associated with the evolution of increased fecundity in this species., (© 2024 John Wiley & Sons Ltd.)- Published
- 2024
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4. Whole-Genome Resequencing Reveals Polygenic Signatures of Directional and Balancing Selection on Alternative Migratory Life Histories.
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Moran PA, Colgan TJ, Phillips KP, Coughlan J, McGinnity P, and Reed TE
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Migration in animals and associated adaptations to contrasting environments are underpinned by complex genetic architecture. Here, we explore the genomic basis of facultative anadromy in brown trout (Salmo trutta), wherein some individuals migrate to sea while others remain resident in natal rivers, to better understand how alternative migratory tactics (AMTs) are maintained evolutionarily. To identify genomic variants associated with AMTs, we sequenced whole genomes for 194 individual trout from five anadromous-resident population pairs, situated above and below waterfalls, in five different Irish rivers. These waterfalls act as natural barriers to upstream migration and hence we predicted that loci underpinning AMTs should be under similar divergent selection across these replicate pairs. A sliding windows based analysis revealed a highly polygenic adaptive divergence between anadromous and resident populations, encompassing 329 differentiated genomic regions. These regions were associated with 292 genes involved in various processes crucial for AMTs, including energy homeostasis, reproduction, osmoregulation, immunity, circadian rhythm and neural function. Furthermore, examining patterns of diversity we were able to link specific genes and biological processes to putative AMT trait classes: migratory-propensity, migratory-lifestyle and residency. Importantly, AMT outlier regions possessed higher genetic diversity than the background genome, particularly in the anadromous group, suggesting balancing selection may play a role in maintaining genetic variation. Overall, the results from this study provide important insights into the genetic architecture of migration and the evolutionary mechanisms shaping genomic diversity within and across populations., (© 2024 The Author(s). Molecular Ecology published by John Wiley & Sons Ltd.)
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- 2024
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5. From microplastics to pixels: testing the robustness of two machine learning approaches for automated, Nile red-based marine microplastic identification.
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Meyers N, De Witte B, Schmidt N, Herzke D, Fuda JL, Vanavermaete D, Janssen CR, and Everaert G
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- Plastics, Water Pollutants, Chemical analysis, Microplastics analysis, Machine Learning, Environmental Monitoring methods, Oxazines analysis
- Abstract
Despite the urgent need for accurate and robust observations of microplastics in the marine environment to assess current and future environmental risks, existing procedures remain labour-intensive, especially for smaller-sized microplastics. In addition to this, microplastic analysis faces challenges due to environmental weathering, impacting the reliability of research relying on pristine plastics. This study addresses these knowledge gaps by testing the robustness of two automated analysis techniques which combine machine learning algorithms with fluorescent colouration of Nile red (NR)-stained particles. Heterogeneously shaped uncoloured microplastics of various polymers-polyethylene (PE), polyethylene terephthalate (PET), polypropylene (PP), polystyrene (PS), and polyvinyl chloride (PVC)-ranging from 100 to 1000 µm in size and weathered under semi-controlled surface and deep-sea conditions, were stained with NR and imaged using fluorescence stereomicroscopy. This study assessed and compared the accuracy of decision tree (DT) and random forest (RF) models in detecting and identifying these weathered plastics. Additionally, their analysis time and model complexity were evaluated, as well as the lower size limit (2-4 µm) and the interoperability of the approach. Decision tree and RF models were comparably accurate in detecting and identifying pristine plastic polymers (both > 90%). For the detection of weathered microplastics, both yielded sufficiently high accuracies (> 77%), although only RF models were reliable for polymer identification (> 70%), except for PET particles. The RF models showed an accuracy > 90% for particle predictions based on 12-30 pixels, which translated to microplastics sized < 10 µm. Although the RF classifier did not produce consistent results across different labs, the inherent flexibility of the method allows for its swift adaptation and optimisation, ensuring the possibility to fine-tune the method to specific research goals through customised datasets, thereby strengthening its robustness. The developed method is particularly relevant due to its ability to accurately analyse microplastics weathered under various marine conditions, as well as ecotoxicologically relevant microplastic sizes, making it highly applicable to real-world environmental samples., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
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- 2024
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6. The Medaka Approach to Evolutionary Social Neuroscience.
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Ansai S, Hiraki-Kajiyama T, Ueda R, Seki T, Yokoi S, Katsumura T, and Takeuchi H
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Previously, the integration of comparative biological and neuroscientific approaches has led to significant advancements in social neuroscience. This review elucidates the potential and future directions of evolutionary social neuroscience research utilizing medaka fishes (the family Adrianichthyidae) including Japanese medaka (Oryzias latipes). We focus on medaka's social cognitive capabilities and mate choice behavior, particularly emphasizing mate preference using visual cues. Medaka fishes are also advantageous due to their abundant genetic resources, extensive genomic information, and the relative ease of laboratory breeding and genetic manipulation. Here we present some research examples of both the conventional neuroscience approach and evolutionary approach involving medaka fishes and other species. We also discuss the prospects of uncovering the molecular and cellular mechanisms underlying the diversity of visual mate preference among species. Especially, we introduce that the single-cell transcriptome technology, particularly in conjunction with 'Adaptive Circuitry Census', is an innovative tool that bridges comparative biological methods and neuroscientific approaches. Evolutionary social neuroscience research using medaka has the potential to unveil fundamental principles in neuroscience and elucidate the mechanisms responsible for generating diversity in mating strategies., Competing Interests: Competing interests The authors declare no competing interests., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)
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- 2024
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7. A comprehensive review of various environmental factors' roles in remote sensing techniques for assessing surface water quality.
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Diganta MTM, Uddin MG, Dabrowski T, Rahman A, and Olbert AI
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The aim of the research was to evaluate the existing remote sensing (RS) products, various tools and techniques, and their limitations in retrieving the optically active (OA) Chlorophyll-a (CHL) concentration from transitional, coastal and inland waters. In recent decades, satellite RS technique has emerged as a vital tool for assessing surface water quality (WQ) in a cost-effective and timely manner. Initially used in the 1970s to study ocean color (OC), RS techniques have advanced significantly, enabling the retrieval of key WQ indicators like CHL, colored dissolved organic matter (CDOM), total suspended matter (TSM), turbidity (TURB), and more from satellite images. Among these indicators, CHL is particularly important as it directly signifies eutrophication. While RS technique has been reliable in estimating CHL concentrations in open waterbodies (case1 water) such as oceans, it's application in shallow, turbid waters (case2 water) like coastal and inland areas faces challenges. Interference from other OA-WQ indicators like CDOM and TSM, coupled with environmental factors such as atmospheric components, sun-glint, and adjacency effects (AE), complicate the accurate CHL estimation. To address these challenges, researchers have developed four categories of CHL retrieval algorithms: empirical, semi-empirical, hybrid and data-driven models. Empirical and data-driven methods are straightforward but require regional calibration for accuracy, whereas semi-empirical approaches, rooted in solid theoretical foundations, demand extensive ancillary optical measurements. To harness the potential of RS in WQ assessment fully, it is essential to optimize these algorithms regionally, tailoring them to the specific optical characteristics of diverse waterbodies. This optimization process is vital for integrating RS technique as a complementary data source alongside traditional monitoring approach. By addressing the impact of environmental factors and fine-tuning CHL retrieval methods according to regional nuances, satellite RS technique can significantly enhance the reliability and effectiveness of surface WQ evaluation, thereby contributing to more informed and efficient water resource management strategies. This review emphasizes the impact of these factors, categorizes CHL retrieval algorithms into empirical, semi-empirical, hybrid and data-driven methods and applicability in terms of tools/models' reliability and challenges for the further advancement of this approaches for monitoring transitional, coastal and inland waters. To optimize the reliability of remotely sensed CHL data, regional configuration(s) of retrieving algorithms is vital. By addressing these challenges and tailoring methods to specific regions, integrating satellite RS into traditional monitoring approaches can significantly enhance surface WQ assessment., (Copyright © 2024. Published by Elsevier B.V.)
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- 2024
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8. Temporal and spatial use of a freshwater lake by upstream and downstream migrating adult Atlantic salmon Salmo salar.
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Cotter D, Ling EN, Egan F, Dillane M, Maoiléidigh NÓ, and Moore A
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Atlantic salmon Salmo salar typically enter fresh water several months prior to spawning and just as pools can provide areas of refuge in river systems, lakes may also provide important refuge habitat during the spawning migration. Using acoustic telemetry we examined the spatial and temporal movements of wild and a ranched strain of Atlantic salmon in a freshwater lake where the main spawning areas were located upstream of the lake. Over the study period (2011-2014), returning adult wild salmon spent an average of 228 days in fresh water and 90% of that time in the lake. On entering the lake, most wild salmon moved quickly to the northern part of the lake, close to the main inflow, spending an average 76% of the time in this location. The average number of days wild fish were absent from the lake during the main spawning period varied between years, ranging from 10 to 26 days for females and 32 to 35 days for males. Seventy four per cent (17/23) of salmon spawners returned to the lake and two salmon subsequently died in the lake post-spawning. Atypically, two salmon were resident in the lake for the whole period in 2013/14. During the study, wild salmon were detected at depths within the top 5 m for 73% of the time. Median depths post-spawning were greater than in the pre-spawning period, when salmon were found to spend extensive periods at depths in excess of 10 m. In July 2013, when the lake was stratified, thermal regulation behaviour was observed in wild salmon, whereby salmon moved to cooler deeper water when water temperatures at 1 m exceeded 20°C. In contrast to wild salmon, the majority of ranch salmon returned to the traps downstream of the lake prior to the spawning period, which would be expected as they were released as smolts below the freshwater lake. Ranch fish spent an average 80% of the time in the vicinity of receivers in the south of the lake and an average 98% of the time within the top 5 m. However, two ranch females were resident in the lake until the following spring and one ranch female moved upstream into the river during the spawning period. Clearly, in this catchment the lake provides an important habitat for migrating adult salmon. In the context of climate change, where thermal and hydrological regimes in rivers are expected to change in response to changes in air temperature and precipitation patterns, the availability of deep lakes that stratify in the summer and cool water refuges in river systems is likely to play a key role in the sustenance and conservation of salmonid species. Information about the migration patterns of Atlantic salmon in undisturbed freshwater systems may also assist in resolving issues associated with fish passage in impacted rivers and inform management decisions., (© 2024 Fisheries Society of the British Isles.)
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- 2024
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9. Exposure to microplastics contaminated with pharmaceuticals and personal care products: Histological effects on Ucides cordatus.
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da Silva LF, Nobre CR, Moreno BB, Pereira CDS, Gonçalves ARN, do Nascimento NSS, Marinsek GP, de Britto Mari R, Simões FR, Carnaúba JH, Choueri RB, Gusso-Choueri PK, and Cesar A
- Abstract
Pharmaceuticals and personal care products (PPCPs) are known to interact with microplastics (MPs) in aquatic environments, with substances such as the antimicrobial triclosan (TCS) and the synthetic hormone 17α-ethinylestradiol (EE2) being prevalent. These persistent contaminants are linked to toxic effects in aquatic organisms. This study aimed to investigate histological and morphometric changes in the gills of Ucides cordatus exposed to microplastics alone and microplastics contaminated with PPCPs. The experimental design included four treatment groups: 1) control (C), 2) virgin microplastics (MP), 3) microplastics fortified with triclosan (MPT), and 4) microplastics fortified with 17α-ethinylestradiol (MPE), with exposure durations of 3 or 7 days. Significant differences were observed in the histopathological indices for treatments with PPCP-fortified microplastics at 3 days (MPT and MPE) and 7 days (MPT). Notable pathologies included necrosis, fibrosis, and circulatory disorders. Exposure duration was significantly associated with morphometric changes, including secondary lamellar width in MPT and secondary lamellar length in MPE. These findings indicate that exposure to microplastics contaminated with PPCPs may impair the osmoregulatory and respiratory functions of Ucides cordatus., (Copyright © 2024. Published by Elsevier B.V.)
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- 2024
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10. "Making a difference": Interpreting responsivity ambience for parole work.
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Taylor MP, Ricciardelli R, and Shively R
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In this article, we draw on qualitative interview data (n = 150) from parole officers (POs) employed in Canada's federal correctional service. Our analysis interprets job satisfaction, accountability, and relational aspects of POs' work, taking a semi-grounded constructivist approach. We discovered correctional workers, such as probation and parole officers, engage in transformational relationships within their workplace environments. However, given economic, social, and political constraints, we question how these change agents actually 'make a difference' in practice. Fidelity to core correctional practices suggests therapeutic alliances are fundamental to intervention. Emergent in our discoveries is how the workplace environment, organizational climate and culture, and penal atmosphere mediate reflexive experiences that inspire motivation, morale, and change. However, our interpretation and situational awareness of parole adds to a lacuna in knowledge about therapeutic relationships in correctional work generally and the responsivity principle specifically for sensemaking about how interventions may sometimes become iatrogenic. We found that POs negotiate their relationships with those under supervision as much as with fellow correctional workers. Responsivity ambience pertains to consolidation and conceptual clarity concerning how corrections, in its public safety mandate, induces in/efficacy. Through discussion, we theorize how securitized settings affect well-being and provide practical insights to converge on the rehabilitative ideal and criminal desistance., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors. Published by Elsevier Ltd.)
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- 2024
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11. Acoustic telemetry suggests the lesser spotted dogfish Scyliorhinus canicula stays and uses habitats within a French offshore wind farm.
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Labourgade P, Couturier LIE, Bourjea J, Woillez M, Feunteun E, Reubens JT, and Trancart T
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Offshore wind farms (OWF) are a rapidly expanding renewable energy source, but their effects on marine wildlife need further investigation. These infrastructures form new artificial habitats that may modify the behaviour and spatial distribution of fish species. Among the species likely to be affected, benthic sharks occupying coastal habitats are particularly exposed to the development of OWF, especially as electrosensitive species. This study used passive acoustic telemetry to investigate the behaviour of a benthic shark, the lesser-spotted dogfish Scyliorhinus canicula, within France's first operational OWF. Most tagged sharks remained in the vicinity of the OWF post-release, exhibiting site fidelity and seasonal residency with reduced presence during winter when water temperatures are the lowest. The primary site frequented is a monopile with scour protection on soft substrate, offering potential shelters and food sources. This study provides new insights into the species' ecology and contributes to improving our understanding of how anthropogenic structure installation in the marine environment affects the behaviour of S. canicula., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2024
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12. Modelling and mapping carbon capture potential of farmed blue mussels in the Baltic Sea region.
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Vaher A, Kotta J, Stechele B, Kaasik A, Herkül K, and Barboza FR
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- Animals, Carbon, Oceans and Seas, Carbon Sequestration, Mytilus edulis metabolism, Aquaculture, Climate Change, Environmental Monitoring
- Abstract
This study applies a regional Dynamic Energy Budget (DEB) model, enhanced to include biocalcification processes, to evaluate the carbon capture potential of farmed blue mussels (Mytilus edulis/trossulus) in the Baltic Sea. The research emphasises the long-term capture of carbon associated with shell formation, crucial for mitigating global warming effects. The model was built using a comprehensive pan-Baltic dataset that includes information on mussel growth, filtration and biodeposition rates, and nutrient content. The study also examined salinity, temperature, and chlorophyll a as key environmental factors influencing carbon capture in farmed mussels. Our findings revealed significant spatial and temporal variability in carbon dynamics under current and future environmental conditions. The tested future predictions are grounded in current scientific understanding and projections of climate change effects on the Baltic Sea. Notably, the outer Baltic Sea subbasins exhibited the highest carbon capture capacity with an average of 55 t (in the present scenario) and 65 t (under future environmental conditions) of carbon sequestrated per farm (0.25 ha) over a cultivation cycle - 17 months. Salinity was the main driver of predicted regional changes in carbon capture, while temperature and chlorophyll a had more pronounced local effects. This research advances our understanding of the role low trophic aquaculture plays in mitigating climate change. It highlights the importance of developing location-specific strategies for mussel farming that consider both local and regional environmental conditions. The results contribute to the wider discourse on sustainable aquaculture development and environmental conservation., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)
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- 2024
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13. World of Crayfish™: a web platform towards real-time global mapping of freshwater crayfish and their pathogens.
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Ion MC, Bloomer CC, Bărăscu TI, Oficialdegui FJ, Shoobs NF, Williams BW, Scheers K, Clavero M, Grandjean F, Collas M, Baudry T, Loughman Z, Wright JJ, Ruokonen TJ, Chucholl C, Guareschi S, Koese B, Banyai ZM, Hodson J, Hurt M, Kaldre K, Lipták B, Fetzner JW, Cancellario T, Weiperth A, Birzaks J, Trichkova T, Todorov M, Balalaikins M, Griffin B, Petko ON, Acevedo-Alonso A, D'Elía G, Śliwińska K, Alekhnovich A, Choong H, South J, Whiterod N, Zorić K, Haase P, Soto I, Brady DJ, Haubrock PJ, Torres PJ, Şadrin D, Vlach P, Kaya C, Woo Jung S, Kim JY, Vermeersch XHC, Bonk M, Guiaşu R, Harlioğlu MM, Devlin J, Kurtul I, Błońska D, Boets P, Masigol H, Cabe PR, Jussila J, Vrålstad T, Beresford DV, Reid SM, Patoka J, Strand DA, Tarkan AS, Steen F, Abeel T, Harwood M, Auer S, Kelly S, Giantsis IA, Maciaszek R, Alvanou MV, Aksu Ö, Hayes DM, Kawai T, Tricarico E, Chakandinakira A, Barnett ZC, Kudor ŞG, Beda AE, Vîlcea L, Mizeranschi AE, Neagul M, Licz A, Cotoarbă AD, Petrusek A, Kouba A, Taylor CA, and Pârvulescu L
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- Animals, Aphanomyces, Internet, Ecosystem, Databases, Factual, Astacoidea microbiology, Fresh Water
- Abstract
Freshwater crayfish are amongst the largest macroinvertebrates and play a keystone role in the ecosystems they occupy. Understanding the global distribution of these animals is often hindered due to a paucity of distributional data. Additionally, non-native crayfish introductions are becoming more frequent, which can cause severe environmental and economic impacts. Management decisions related to crayfish and their habitats require accurate, up-to-date distribution data and mapping tools. Such data are currently patchily distributed with limited accessibility and are rarely up-to-date. To address these challenges, we developed a versatile e -portal to host distributional data of freshwater crayfish and their pathogens (using Aphanomyces astaci , the causative agent of the crayfish plague, as the most prominent example). Populated with expert data and operating in near real-time, World of Crayfish ™ is a living, publicly available database providing worldwide distributional data sourced by experts in the field. The database offers open access to the data through specialized standard geospatial services (Web Map Service, Web Feature Service) enabling users to view, embed, and download customizable outputs for various applications. The platform is designed to support technical enhancements in the future, with the potential to eventually incorporate various additional features. This tool serves as a step forward towards a modern era of conservation planning and management of freshwater biodiversity., Competing Interests: The authors declare there are no competing interests., (©2024 Ion et al.)
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- 2024
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14. Complementarity and sensitivity of benthic state indicators to bottom-trawl fishing disturbance.
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van Denderen PD, Plaza-Morlote M, Vaz S, Wijnhoven S, Borja A, Fernandez-Arcaya U, González-Irusta JM, Hansen JLS, Katsiaras N, Pierucci A, Serrano A, Reizopoulou S, Papadopoulou N, Sköld M, Smith CJ, Nygård H, Van Hoey G, Dinesen GE, Virtanen EA, Boyé A, García-Alegre A, Bellas J, Bolam S, Muñoz PD, Sacau M, Riva G, Kenchington E, Raicevich S, Reid D, Roux MJ, Hiddink JG, and Valanko S
- Abstract
Many indicators have been developed to assess the state of benthic communities and identify seabed habitats most at risk from bottom trawling disturbance. However, the large variety of indicators and their development and application under specific geographic areas and management contexts has made it difficult to evaluate their wider utility. We compared the complementarity/uniqueness, sensitivity, and selectivity of 18 benthic indicators to pressure of bottom trawling. Seventeen common datasets with broad regional representation covering a range of pressure gradients from bottom trawling disturbance (n = 14), eutrophication (n = 1), marine pollution (n = 1), and oxygen depletion (n = 1) were used for the comparison. The outcomes of most indicators were correlated to a certain extent with response to bottom trawling disturbance, and two complementary groups of indicators were identified: diversity-based and biological trait-based indicators. Trait-based indicators that quantify the changes in relative abundance of sensitive taxa were most effective in identifying benthic community change in response to bottom trawling disturbance. None of the indicators responded to the trawling pressure gradient in all datasets, and some showed a response that were opposed to the theoretical expectation for some gradients. Indicators that showed clear responses to bottom trawling disturbance also showed clear responses in at least one other pressure gradient, suggesting those indicators are not pressure specific. These results emphasize the importance of selecting several indicators, at least one from each group (diversity and trait-based), to capture the broader signals of change in benthic communities due to bottom trawling activities. Our systematic approach offers the basis from which scientific advisors and/or managers can select suitable combinations of indicators to arrive at a sensitive and comprehensive benthic status assessment., (© 2024 The Author(s). Ecological Applications published by Wiley Periodicals LLC on behalf of The Ecological Society of America.)
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- 2024
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15. The identity of Centrodinium elongatum, type species of the dinoflagellate genus Centrodinium (Dinophyceae), and a review on the synonymy of allied species.
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Gómez F, Navarrete-Carlos TC, López-Osorio YE, Zhang H, Raymond E, Salas R, Alonso-Rodríguez R, and Lin S
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The planktonic dinoflagellate genus Centrodinium has been understudied, with the type species C. elongatum remaining undocumented since the original description. Here, we report C. elongatum isolated from Mazatlán, Mexican Pacific. In the chains, the posterior daughter cell with an incomplete apical horn shows the morphology of C. elongatum, while the anterior daughter cell with complete epitheca corresponds to C. pulchrum. For the first time, a species of Centrodinium sensu stricto (highly laterally flattened species with horns) was cultured. An unarmored life stage, known as Murrayella ovalis, derived from the spheroplast after ecdysis. In the rDNA molecular phylogenies, C. elongatum (=C. pulchrum) nested as basal to morphologically similar species (C. eminens and C. intermedium) and as a sister group of a former Murrayella species, C. punctatum. C. elongatum differs from C. eminens and C. intermedium in the chain formation, second apical (2') plate not being divided, horns with coarse poroid ornamentation, and missing prominent distal spinules. The taxonomy of Centrodinium sensu stricto is revised, with a discussion in the identities of C. complanatum, C. eminens, and C. maximum. The name C. deflexum is restored as a senior synonym of C. intermedium and C. ovale., (© 2024 International Society of Protistologists.)
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- 2024
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16. Atmospheric microplastic input into wetlands: Spatiotemporal patterns, drivers, and unique ecological impacts.
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Xu L, Tian X, Bai X, Li K, Zhang G, Zhang M, Rillig MC, Huang Y, and Hu M
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Wetlands are major microplastic sinks with a large atmospheric input. However, many details of such deposited atmospheric microplastics entering into wetlands remain unclear, including temporal patterns of input and ecological effects. We monitored the aerial microplastics during four seasons in eleven economically developed cities along the lower reaches of the Yangtze River Basin, China. The average microplastic deposition rate was 512.31 items m
-2 d-1 , equivalent to an annual contribution of 17.46 metric tons of plastic to the surveyed wetlands with a total area of 1652 km2 . These microplastics were predominantly composed of polyamide and polyethylene terephthalate with 61.85 ± 92.29 µm sized pellets, and we obtained similar results for microplastics intercepted on moss in wetlands. Microplastic input varied between wet and dry periods, primarily influenced by wind, rainfall and ozone concentration. Civilian vehicle density and textile industry were the primary socioeconomic factors driving microplastic deposition. Further indoor microcosm experiments revealed that moss phyllosphere bacterial community structure and function were influenced by microplastic abundance and size, exemplifying the unique ecological risks of aerially deposited microplastics to wetlands. These results indicate that mosses and their phyllosphere microbiota could serve as bio-indicators of aerial microplastic characteristics and impacts., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)- Published
- 2024
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17. Optimizing the prediction of discard survival of bottom-trawled plaice based on vitality indicators.
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Uhlmann SS, Savina E, Karlsen J, and Ampe B
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Predicting the discard survival of aquatic animals after fisheries capture using vitality indicators (i.e. individual scores or indices of physical condition) is a resource-efficient approach compared to estimating discard survival from captive observation. But such indicators do not always lead to accurate and robust predictions. Individual scores of reflex impairments and injuries are typically given the same weight when being aggregated into an index, while some reflexes or injuries may contribute to mortality more than others. This study established an analytical methodology and created an index based on differential contributions of individual reflexes and injuries to optimize the prediction of discard survival of bottom-trawled European plaice ( Pleuronectes platessa ). The optimization procedures were applied to a dataset from vitality assessment of 1122 undersized plaice caught during 16 commercial fishing trips and 58 gear deployments in Belgium and Denmark. As welfare indicators, we considered and evaluated against post-capture survival of plaice: original vs. optimized reflex impairment and injury (R&I) index, number of absent reflexes, number of present injuries, number of absent reflexes and present injuries, categorical vitality score and individual reflex and injury scores. These were used in eight candidate generalized linear models (one without any vitality indicator) as explanatory variables to predict survival, with or without biological, environmental, technical and operational covariates, either at the individual fish or trip level. Bruising to the head and body were the most relevant predictors. The optimized R&I index did not perform better than any other vitality indicator, and all the indicators performed poorly in predicting survival probability both at the fish and trip levels without information on air exposure and seawater temperature. This means that they cannot be considered to be independent measures. The categorical vitality score provided a viable alternative to the more labour-intensive, scoring method of reflex responsiveness. Use of reflexes as proxies may not be accurate when they are not independent of environmental, biological or technical variables., Competing Interests: There are no conflicts of interest., (© The Author(s) 2024. Published by Oxford University Press and the Society for Experimental Biology.)
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- 2024
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18. Author Correction: Exploring steric sea level variability in the Eastern Tropical Atlantic Ocean: a three-decade study (1993-2022).
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Ghomsi FEK, Mohamed B, Raj RP, Bonaduce A, Abiodun BJ, Nagy H, Quartly GD, and Johannessen OM
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- 2024
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19. Bioactives from marine resources as natural health products: A review .
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Santhiravel S, Dave D, and Shahidi F
- Abstract
The oceans are a rich source of a myriad of structurally different and unique natural products that are mainly found in invertebrates with potential applications in different disciplines. Microbial infection and cancer are the leading causes of death worldwide. Discovery of new sources of therapy for microbial infections is an urgent requirement due to the emergence of pathogenic microorganisms that are resistant to existing therapies. Marine bioactives have demonstrated to be promising sources for the discovery and development of novel antimicrobial and anticancer compounds. Several marine compounds are confirmed to have antibacterial effects and most marine-based antifungal compounds are cytotoxic. Numerous antitumor marine natural products, derived mainly from sponges or molluscs, and also bryozoans and cyanobacteria, exhibit potent antimitotic activity. In addition, marine biodiversity offers some possible leads or new drugs to treat human immunodeficiency virus (HIV). A majority of marine derived drugs are currently in clinical trials or under preclinical evaluation. Furthermore, marine-based drugs, approved by the US Food and Drug Administration (FDA) are available in the market. This review summarizes the sources, mechanisms of action and potential utilization of marine natural products such as peptides, alkaloids, polyketides, polyphenols, terpenoids and sterols as antifungal, antibacterial, antiviral, and anticancer compounds. Significance Statement Utilization of marine bioactives as natural health products leads to crucial advancement in providing dietary supplements, nutraceuticals, functional foods and pharmaceuticals. Their myriad of application promotes health and plays a role in disease risk reduction. Therapeutic potential of potent compounds from marine organisms and use of their bioactives have promising medicinal value for preventing ailments and advancing pharmaceutical and nutraceutical industries. Their utilization benefits human health globally and contributes to the conservation of marine ecosystem in a transformative / sustainable approach., (Copyright © 2024 American Society for Pharmacology and Experimental Therapeutics.)
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- 2024
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20. The hepatopancreas microbiome of velvet crab, Necora puber.
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Martin S, Smith C, Stewart K, Barr W, Cheslett D, O'Connor I, Swords F, Ijaz UZ, and O'Dwyer K
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- Animals, Bacteria classification, Bacteria genetics, Bacteria isolation & purification, Phylogeny, Brachyura microbiology, RNA, Ribosomal, 16S genetics, Hepatopancreas microbiology, Microbiota
- Abstract
Crustaceans are a valuable resource globally, both ecologically and economically, and investigations into their health are becoming increasingly important as exploitation rises. The microbiome plays a crucial role in crustacean immunity, and understanding its composition and structure can provide insights into the health of an organism and its interactions with various factors. In this study, we investigated the hepatopancreas microbiome of the velvet swimming crab, Necora puber, and compared its composition and structure with several study factors, including two different sampling points and infection with a paramyxid parasite, Paramarteilia canceri. To our knowledge, we provide the first description of a velvet crab microbiome, highlighting the dominance of a single microorganism, Candidatus hepatoplasma. We identified variations in microbiome composition between sampling points and discussed the possible processes affecting microbiome assembly. We also outline a core microbiome for the velvet crab hepatopancreas, consisting of 12 core phyla. Our study adds to the growing literature on crustacean microbiomes and provides a baseline for future investigations into the velvet crab microbiome and the health of this crustacean species., (© 2024 The Author(s). Environmental Microbiology Reports published by John Wiley & Sons Ltd.)
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- 2024
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21. Towards reliable data: Validation of a machine learning-based approach for microplastics analysis in marine organisms using Nile red staining.
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Meyers N, Everaert G, Hostens K, Schmidt N, Herzke D, Fuda JL, Janssen CR, and De Witte B
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- Animals, Oxazines, Fishes, Mytilus edulis, Gastrointestinal Tract, Plastics, Machine Learning, Water Pollutants, Chemical analysis, Microplastics analysis, Aquatic Organisms, Environmental Monitoring methods
- Abstract
Microplastic (MP) research faces challenges due to costly, time-consuming, and error-prone analysis techniques. Additionally, the variability in data quality across studies limits their comparability. This study addresses the critical need for reliable and cost-effective MP analysis methods through validation of a semi-automated workflow, where environmentally relevant MP were spiked into and recovered from marine fish gastrointestinal tracts (GITs) and blue mussel tissue, using Nile red staining and machine learning automated analysis of different polymers. Parameters validated include trueness, precision, uncertainty, limit of quantification, specificity, sensitivity, selectivity, and method robustness. For fish GITs a 95 ± 9 % recovery rate was achieved, and 87 ± 11 % for mussels. Polymer identification accuracies were 76 ± 8 % for fish GITs and 80 ± 13 % for mussels. Polyethylene terephthalate fragments showed more variability with lower accuracies. The proposed validation parameters offer a step towards quality management guidelines, as such aiding future researchers and fostering cross-study comparability., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier Ltd.)
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- 2024
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22. Comparative analysis of microplastics detection methods applied to marine sediments: A case study in the Bay of Marseille.
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Gerigny O, Blanco G, Lips U, Buhhalko N, Chouteau L, Georges E, Meyers N, Vanavermaete D, Galgani F, Ourgaud M, Papillon L, Sempéré R, and De Witte B
- Subjects
- France, Geologic Sediments chemistry, Environmental Monitoring methods, Water Pollutants, Chemical analysis, Bays, Microplastics analysis
- Abstract
An intercomparison exercise on "microplastics in sediment" was carried out by five laboratories using samples collected in the Bay of Marseille in September 2021. The results from different extraction and identification methods varied depending on the type and size classes of MPs, and was better than 80 % for the size class >300 μm and for the fragments. The variability in recovery rates can be attributed to the choice of reagents and extraction protocols. Recovery rates per laboratory were between 47 % and 113 % and the use of ZnCl
2 and NaI increased recovery rates by an average of 70 %. The lowest recovery rates (47 and 53 %) were attributed to the reference methods (FTIR and LDIR), conversely the highest (80 and 87 %) were attributed to identification by Nile Red. The average ranged between 23 and 53 items /50 g d.w. with decreases offshore and at greater depth., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2024
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23. Normalizing fentanyl: interpreting the perceived 'risk' of correctional officer work.
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Ricciardelli R, Johnston MS, and Foley G
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- Humans, Male, Canada, Female, Adult, Opioid-Related Disorders epidemiology, Drug Overdose prevention & control, Drug Overdose epidemiology, Middle Aged, Interviews as Topic, Analgesics, Opioid adverse effects, Analgesics, Opioid therapeutic use, Analgesics, Opioid administration & dosage, Correctional Facilities Personnel, Fentanyl adverse effects, Prisons, Qualitative Research
- Abstract
Background: Scholarship on how fentanyl affects the complexities of correctional settings is limited in Canada, as scholars have focused on the prevalence of opioid use and overdose in prisons, as well as community treatment and access following release. Fentanyl constitutes a continuing challenge both in prisons and broader society., Results: The current qualitative, interview-based empirical study examines how fentanyl is interpreted by correctional officers (COs, n = 99) across federal prisons in Canada, some of whom have worked in institutions with a high presence of fentanyl, while others have less exposure to the drug. We found that while many COs had responded to an overdose during their first or second year on the job, most COs who had did not perceive the event to be psychologically traumatic nor were concerned about the presence and availability fentanyl in their work environment, or they were indifferent. Yet this finding competes with the 41.4% of officers who did express concern about the presence of fentanyl - suggesting both a "normalization" of fentanyl as a workplace hazard as well as an underpinning social concern., Conclusions: We discuss the implications of these complicated findings in relation to reducing workplace stressors and countering misinformation that, in addition to other potential occupational factors, may be responsible for the concerns of COs tied to the presence of fentanyl., (© 2024. The Author(s).)
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- 2024
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24. Optimization of Enzymatic Deproteination of Northern Shrimp ( Pandalus borealis ) Shell Chitin Using Commercial Proteases.
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Pohling J, Ramakrishnan VV, Hossain A, Trenholm S, and Dave D
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- Animals, Hydrogen-Ion Concentration, Chitin chemistry, Peptide Hydrolases metabolism, Animal Shells chemistry, Papain, Pandalidae
- Abstract
Shrimp shells are a key source of chitin, commonly extracted through chemical methods, which may cause minor molecular damage. Nowadays, there is great interest in achieving close to zero protein content in crude chitin in order to use it for high-end markets. Therefore, this study optimized the enzymatic deproteination using two commercial proteases (SEB Pro FL100 and Sea-B Zyme L200) for effective and fast removal of residual protein from Northern shrimp ( Pandalus borealis ) shell chitin for the first time. The protein content was determined using both the Kjeldahl method and amino acid analysis using gas chromatography-mass spectrometry (GC-MS). The performance of papain (Sea B Zyme L200) was superior to fungal protease (SEB Pro FL100) for this application, and it achieved residual protein content of 2.01%, while the calculated optimum for the latter enzyme was 6.18%. A model was developed using 2
4 factorial design, and it was predicted that the lowest residual protein content using fungal protease and papain could be achieved at the following conditions: a pH of 4.2 and 7, and an enzyme concentration of 4 and 1.5%, respectively. Thus, the low-protein content obtained using enzymatic deproteination could be an alternative approach to the traditional methods, indicating their potential to produce premium-quality chitin.- Published
- 2024
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25. Seasonality of primary production explains the richness of pioneering benthic communities.
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Cecchetto M, Dettai A, Gallut C, Obst M, Kuklinski P, Balazy P, Chelchowski M, Małachowicz M, Poćwierz-Kotus A, Zbawicka M, Reiss H, Eléaume MP, Ficetola GF, Pavloudi C, Exter K, Fontaneto D, and Schiaparelli S
- Subjects
- Animals, Ecosystem, Coral Reefs, Temperature, Aquatic Organisms physiology, DNA Barcoding, Taxonomic, Seasons, Biodiversity
- Abstract
A pattern of increasing species richness from the poles to the equator is frequently observed in many animal taxa. Ecological limits, determined by the abiotic conditions and biotic interactions within an environment, are one of the major factors influencing the geographical distribution of species diversity. Energy availability is often considered a crucial limiting factor, with temperature and productivity serving as empirical measures. However, these measures may not fully explain the observed species richness, particularly in marine ecosystems. Here, through a global comparative approach and standardised methodologies, such as Autonomous Reef Monitoring Structures (ARMS) and DNA metabarcoding, we show that the seasonality of primary production explains sessile animal richness comparatively or better than surface temperature or primary productivity alone. A Hierarchical Generalised Additive Model (HGAM) is validated, after a model selection procedure, and the prediction error is compared, following a cross-validation approach, with HGAMs including environmental variables commonly used to explain animal richness. Moreover, the linear effect of production magnitude on species richness becomes apparent only when considered jointly with seasonality, and, by identifying world coastal areas characterized by extreme values of both, we postulate that this effect may result in a positive relationship in environments with lower seasonality., (© 2024. The Author(s).)
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- 2024
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26. Cortisol in fish scales remains stable during extended periods of storage.
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O'Toole C, White P, Graham CT, Conroy C, and Brophy D
- Abstract
Measurement of cortisol in fish scales is attracting considerable attention as a non-invasive indicator of chronic stress in wild populations. For many fish species of management and conservation interest, extensive scale collections exist that could provide extended records of individual stress responses, by combining cortisol measurements with life history information. However, it is not yet known how well cortisol is preserved in the scale during storage. To investigate the stability of scale cortisol, we accelerated potential degradation by storing scales from an individual farmed Atlantic salmon ( Salmo salar ) in an oven at 50°C for between 2 and 12 weeks. We found no significant relationship between scale cortisol concentration and either storage time or storage temperature. Cortisol concentrations in scales from the same fish were consistent (18.54-21.82 ng. g
-1 ; coefficient of variation (CV) = 3.6%), indicating that scale cortisol can be reliably quantified, even in scales stored for varying periods of time or under different conditions. We also examined the effects of storage in real time using Atlantic salmon scales that were stored in paper envelopes at room temperature for between 3 and 32 years and found no significant relationship between scale cortisol concentration and storage time. Scale cortisol concentrations ranged from 4.05 to 135.37 ng.g-1 and levels of between-individual variability were high (CV = 61%). Given that scale cortisol does not degrade during long-term storage, historical scale collections and associated data describing fish life histories could potentially be used to develop bioindicators of physiological responses in fish populations. Further research is needed to understand scale cortisol variability and its biological relevance., Competing Interests: The authors have no conflicts of interest to declare., (© The Author(s) 2024. Published by Oxford University Press and the Society for Experimental Biology.)- Published
- 2024
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27. Population Genomics of the Blue Shark, Prionace glauca , Reveals Different Populations in the Mediterranean Sea and the Northeast Atlantic.
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Leone A, Arnaud-Haond S, Babbucci M, Bargelloni L, Coscia I, Damalas D, Delord C, Franch R, Garibaldi F, Macias D, Mariani S, Martinsohn J, Megalofonou P, Micarelli P, Nikolic N, Prodöhl PA, Sperone E, Stagioni M, Zanzi A, Cariani A, and Tinti F
- Abstract
Populations of marine top predators have been sharply declining during the past decades, and one-third of chondrichthyans are currently threatened with extinction. Sustainable management measures and conservation plans of large pelagic sharks require knowledge on population genetic differentiation and demographic connectivity. Here, we present the case of the Mediterranean blue shark ( Prionace glauca , L. 1758), commonly found as bycatch in longline fisheries and classified by the IUCN as critically endangered. The management of this species suffers from a scarcity of data about population structure and connectivity within the Mediterranean Sea and between this basin and the adjacent Northeast Atlantic. Here, we assessed the genetic diversity and spatial structure of blue shark from different areas of the Mediterranean Sea and the Northeast Atlantic through genome scan analyses. Pairwise genetic differentiation estimates ( F
ST ) on 203 specimens genotyped at 14,713 ddRAD-derived SNPs revealed subtle, yet significant, genetic differences within the Mediterranean sampling locations, and between the Mediterranean Sea and the Northeast Atlantic Ocean. Genetic differentiation suggests some degree of demographic independence between the Western and Eastern Mediterranean blue shark populations. Furthermore, results show limited genetic connectivity between the Mediterranean and the Atlantic basins, supporting the hypothesis of two distinct populations of blue shark separated by the Strait of Gibraltar. Although reproductive interactions may be limited, the faint genetic signal of differentiation suggests a recent common history between these units. Therefore, Mediterranean blue sharks may function akin to a metapopulation relying upon local demographic processes and connectivity dynamics, whereby the limited contemporary gene flow replenishment from the Atlantic may interplay with currently poorly regulated commercial catches and large-scale ecosystem changes. Altogether, these results emphasise the need for revising management delineations applied to these critically endangered sharks., Competing Interests: The authors declare no conflicts of interest., (© 2024 The Author(s). Evolutionary Applications published by John Wiley & Sons Ltd.)- Published
- 2024
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28. Corrigendum to "Spatial monitoring of microplastics in environmental matrices from Galway Bay, Ireland" [Mar. Pollut. Bull. volume (200) 116153].
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Frias J, Joyce H, Brozzetti L, Pagter E, Švonja M, Kavanagh F, and Nash R
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- 2024
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29. Substantial increase of organic carbon storage in Chinese lakes.
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Liu D, Shi K, Chen P, Yan N, Ran L, Kutser T, Tyler AN, Spyrakos E, Woolway RI, Zhang Y, and Duan H
- Abstract
Previous studies typically assumed a constant total organic carbon (OC) storage in the lake water column, neglecting its significant variability within a changing world. Based on extensive field data and satellite monitoring techniques, we demonstrate considerable spatiotemporal variability in OC concentration and storage for 24,366 Chinese lakes during 1984-2023. Here we show that dissolved OC concentration is high in northwest saline lakes and particulate OC concentration is high in southeast eutrophic lakes. Along with increasing OC concentration and water volume, dissolved and particulate OC storage increase by 44.6% and 33.5%, respectively. Intensified human activities, water input, and wind disturbance are the key drivers for increasing OC storage. Moreover, higher OC storage further leads to an 11.0% increase in nationwide OC burial and a decrease in carbon emissions from 71.1% of northwest lakes. Similar changes are occurring globally, which suggests that lakes are playing an increasingly important role in carbon sequestration., (© 2024. The Author(s).)
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- 2024
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30. A rockslide-generated tsunami in a Greenland fjord rang Earth for 9 days.
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Svennevig K, Hicks SP, Forbriger T, Lecocq T, Widmer-Schnidrig R, Mangeney A, Hibert C, Korsgaard NJ, Lucas A, Satriano C, Anthony RE, Mordret A, Schippkus S, Rysgaard S, Boone W, Gibbons SJ, Cook KL, Glimsdal S, Løvholt F, Van Noten K, Assink JD, Marboeuf A, Lomax A, Vanneste K, Taira T, Spagnolo M, De Plaen R, Koelemeijer P, Ebeling C, Cannata A, Harcourt WD, Cornwell DG, Caudron C, Poli P, Bernard P, Larose E, Stutzmann E, Voss PH, Lund B, Cannavo F, Castro-Díaz MJ, Chaves E, Dahl-Jensen T, Pinho Dias N, Déprez A, Develter R, Dreger D, Evers LG, Fernández-Nieto ED, Ferreira AMG, Funning G, Gabriel AA, Hendrickx M, Kafka AL, Keiding M, Kerby J, Khan SA, Dideriksen AK, Lamb OD, Larsen TB, Lipovsky B, Magdalena I, Malet JP, Myrup M, Rivera L, Ruiz-Castillo E, Wetter S, and Wirtz B
- Abstract
Climate change is increasingly predisposing polar regions to large landslides. Tsunamigenic landslides have occurred recently in Greenland ( Kalaallit Nunaat ), but none have been reported from the eastern fjords. In September 2023, we detected the start of a 9-day-long, global 10.88-millihertz (92-second) monochromatic very-long-period (VLP) seismic signal, originating from East Greenland. In this study, we demonstrate how this event started with a glacial thinning-induced rock-ice avalanche of 25 × 10
6 cubic meters plunging into Dickson Fjord, triggering a 200-meter-high tsunami. Simulations show that the tsunami stabilized into a 7-meter-high long-duration seiche with a frequency (11.45 millihertz) and slow amplitude decay that were nearly identical to the seismic signal. An oscillating, fjord-transverse single force with a maximum amplitude of 5 × 1011 newtons reproduced the seismic amplitudes and their radiation pattern relative to the fjord, demonstrating how a seiche directly caused the 9-day-long seismic signal. Our findings highlight how climate change is causing cascading, hazardous feedbacks between the cryosphere, hydrosphere, and lithosphere.- Published
- 2024
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31. Seasonal habitat use and diel vertical migration in female spurdog in Nordic waters.
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Klöcker CA, Albert OT, Ferter K, Bjelland O, Lennox RJ, Albretsen J, Pohl L, Dahlmo LS, Queiroz N, and Junge C
- Abstract
Background: Studying habitat use and vertical movement patterns of individual fish over continuous time and space is innately challenging and has therefore largely remained elusive for a wide range of species. Amongst sharks, this applies particularly to smaller-bodied and less wide-ranging species such as the spurdog (Squalus acanthias Linnaeus, 1758), which, despite its importance for fisheries, has received limited attention in biologging and biotelemetry studies, particularly in the North-East Atlantic., Methods: To investigate seasonal variations in fine-scale niche use and vertical movement patterns in female spurdog, we used archival data from 19 pregnant individuals that were satellite-tagged for up to 365 days in Norwegian fjords. We estimated the realised niche space with kernel densities and performed continuous wavelet analyses to identify dominant periods in vertical movement. Triaxial acceleration data were used to identify burst events and infer activity patterns., Results: Pregnant females frequently utilised shallow depths down to 300 m at temperatures between 8 and 14 °C. Oscillatory vertical moments revealed persistent diel vertical migration (DVM) patterns, with descents at dawn and ascents at dusk. This strict normal DVM behaviour dominated in winter and spring and was associated with higher levels of activity bursts, while in summer and autumn sharks predominantly selected warm waters above the thermocline with only sporadic dive and bursts events., Conclusions: The prevalence of normal DVM behaviour in winter months linked with elevated likely foraging-related activity bursts suggests this movement behaviour to be foraging-driven. With lower number of fast starts exhibited in warm waters during the summer and autumn months, habitat use in this season might be rather driven by behavioural thermoregulation, yet other factors may also play a role. Individual and cohort-related variations indicate a complex interplay of movement behaviour and habitat use with the abiotic and biotic environment. Together with ongoing work investigating fine-scale horizontal movement as well as sex- and age-specific differences, this study provides vital information to direct the spatio-temporal distribution of a newly reopened fishery and contributes to an elevated understanding of the movement ecology of spurdog in the North-East Atlantic and beyond., (© 2024. The Author(s).)
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- 2024
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32. Cetacean passive acoustic network in the Belgian part of the North sea.
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Calonge A, Navarro González P, Mortelmans J, Deneudt K, Hernandez F, and Debusschere E
- Subjects
- North Sea, Animals, Belgium, Vocalization, Animal, Acoustics, Phocoena physiology
- Abstract
In 2016, a design for detecting harbor porpoises (Phocoena phocoena) in the Belgian part of the North Sea (BPNS) was developed in the framework of the LifeWatch project using Passive Acoustic Monitoring (PAM) loggers. In 2018, the network of deployments fully matured, and eight locations across the BPNS are presently housed with a C-POD (Chelonia Ltd., UK), a PAM logger moored on the seafloor using a multi-use platform. The PAM logger continuously listens for harbor porpoise click trains, but only stores the click parameters. This paper presents the generated data series of harbor porpoise click trains at a minute-resolution and the details on the individual click trains. The field recordings, methodology and processing are described, along with its data curation, integration and quality control. The data are annually published online in a standardized format, accompanied with the metadata description, and labelled with a digital object identifier for traceability. Data are published under a CC-BY license, allowing the use of data under the condition of providing reference to the original source., (© 2024. The Author(s).)
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- 2024
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33. Exploring steric sea level variability in the Eastern Tropical Atlantic Ocean: a three-decade study (1993-2022).
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Ghomsi FEK, Mohamed B, Raj RP, Bonaduce A, Abiodun BJ, Nagy H, Quartly GD, and Johannessen OM
- Abstract
Sea level rise (SLR) poses a significant threat to coastal regions worldwide, particularly affecting over 60 million people living below 10 m above sea level along the African coast. This study analyzes the spatio-temporal trends of sea level anomaly (SLA) and its components (thermosteric, halosteric and ocean mass) in the Eastern Tropical Atlantic Ocean (ETAO) from 1993 to 2022. The SLA trend for the ETAO, derived from satellite altimetry, is 3.52 ± 0.47 mm/year, similar to the global average of 3.56 ± 0.67 mm/year. Of the three upwelling regions, the Gulf of Guinea (GoG) shows the highest regional trend of 3.42 ± 0.12 mm/year. Using the ARMORD3D dataset, a positive thermosteric sea level trend of 0.88 ± 0.04 mm/year is observed, particularly in the equatorial and southern Atlantic regions. The steric component drives the interannual SLA variability, while the ocean mass component dominates the long-term trends, as confirmed by the GRACE and GRACE-FO missions for 2002-2022. For those two decades, the total SLR from altimetry amounts to 3.80 ± 0.8 mm/year, whilst the steric component is reduced to only 0.19 ± 0.05 mm/year, leaving a residual increase in the ETAO of 3.69 ± 0.5 mm/year. The independent mass change from GRACE amounts to 2.78 ± 0.6 mm/year for this region, which just closes the sea level budget within present uncertainty levels. Spatial analysis of the steric components indicates a warming along the equatorial African coast including the GoG and a freshening near Angola. Strong correlations with regional climate factors, particularly the Tropical South Atlantic Index, highlight the influence of persistent climate modes. These findings underscore the urgent need for mitigation and adaptation strategies to SLR in the ETAO, especially for densely populated coastal communities., (© 2024. The Author(s).)
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- 2024
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34. Pseudohoeflea coraliihabitans sp. nov., a poly- β -hydroxybutyrate-producing, halotolerant bacterium isolated from coral sediment in the Dapeng peninsula (Guangdong, China).
- Author
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Yu SY, Lu XJ, Zhang MJ, Luan SJ, Huang Y, and Zheng WS
- Subjects
- China, Animals, Polyhydroxybutyrates, Phylogeny, RNA, Ribosomal, 16S genetics, Fatty Acids, Hydroxybutyrates metabolism, DNA, Bacterial genetics, Nucleic Acid Hybridization, Polyesters metabolism, Geologic Sediments microbiology, Sequence Analysis, DNA, Bacterial Typing Techniques, Base Composition, Anthozoa microbiology
- Abstract
A Gram-stain-negative, strictly aerobic, motile, flagellated, rod-shaped, halotolerant, and poly- β -hydroxyalkanoate-producing bacterium, designated DP4N28-3
T , was isolated from offshore sediment surrounding hard coral in the Dapeng peninsula (Guangdong, PR China). Growth occurred at 15-35 °C (optimal at 30 °C), pH 6.0-9.5 (optimal at 6.0-7.0), and 0.0-30.0 % NaCl concentration (w/v, optimal at 0.0-2.0 %), showing halotolerance. Phylogeny based on 16S rRNA gene sequences, five housekeeping genes, and genome sequences identified Pseudohoeflea suaedae DSM 23348T (98.1 %, 16S rRNA gene sequence similarity) as the most related species to strain DP4N28-3T . Average nucleotide identity, digital DNA-DNA hybridization, and average amino acid identity values between strain DP4N28-3T and P. suaedae DSM 23348T were all below the threshold of species demarcation. Major phenotypic differences were the flagella type and the limited sources of single carbon utilization by strain DP4N28-3T , which only included acetic acid, acetoacetic acid, d-glucuronic acid, and glucuronamide. Strain DP4N28-3T harboured the class I poly- β -hydroxyalkanoate synthase gene ( phaC ) and produced poly- β -hydroxybutyrate. The fatty acids were summed feature 8 (C18 : 1 ω 6 c and/or C18 : 1 ω 7 c , 49.4 %) and C16 : 0 (13.4 %). The major cellular polar lipids consisted of phosphatidylcholine, phosphatidylethanolamine, phosphatidylmonomethylethanolamine, phosphatidylglycerol, and sulfoquinovosyl diacylglycerol. The respiratory quinone was Q-10. The results of the phylogenetic, genomic, phenotypic, and chemotaxonomic analysis indicated that the isolated strain represents the type strain of a novel species. Based on these results, strain DP4N28-3T (=MCCC 1K05639T =KCTC 82803T ) is proposed as the type strain of the novel species Pseudohoeflea coraliihabitans sp. nov.- Published
- 2024
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35. Female, juvenile, and calf sperm whale Physeter macrocephalus (Linnaeus 1758) records from Ireland.
- Author
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O'Callaghan SA, Griffin B, Levesque S, Gammell M, and O'Brien J
- Abstract
Sperm whales spatially segregate by sex and social behavior as they mature. In the North Atlantic, male whales move to higher latitudes as far as Svalbard at 80° N, while females and young whales typically remain around lower latitudes below 40-45° N. The Azores, Madeira, and the Canary Islands constitute important nursery grounds for female and young sperm whales. Irish waters represent a midpoint for this species' spatial segregation in the Northeast Atlantic, where the species occurs along the submarine canyon systems to the west of the country. Historically, just male whales were thought to be found in this region between 51 and 55° N, but one adult female was caught by commercial whalers in 1910, and a 5.49 m calf was found stranded in 1916. Between 1995 and 2023, 10 female sperm whales have been stranded around the coast of Ireland. Eight of these whales have been stranded since 2013, and there has been at least one stranding per year between 2019 and 2023. Four of these strandings have occurred in Donegal in the northwest of Ireland, indicating the presence of female whales along the continental shelf off this region. Two females were stranded within a day of each other and were found in similar states of decomposition in February 2022, indicating that they may have been part of the same group rather than being lone vagrant individuals. Sperm whale calves and juveniles were also sighted in Irish waters in 2001, 2004, and 2010 in the Rockall Trough, along the Porcupine Bank and Goban Spur, where between 1 and 3 individuals were observed on four occasions while one calf live stranded in 2004. These records indicate a historical presence of female and young sperm whales in this region but that an apparent increase in occurrence has taken place over the past decade., Competing Interests: The authors declare no competing interests., (© 2024 The Author(s). Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2024
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36. Enabling cyber resilient shipping through maritime security operation center adoption: A human factors perspective.
- Author
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Nganga A, Scanlan J, Lützhöft M, and Mallam S
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- Humans, Male, Adult, Female, Ergonomics, Middle Aged, Grounded Theory, Qualitative Research, Security Measures, Ships, Computer Security standards
- Abstract
The increased adoption of digital systems in the maritime domain has led to concerns about cyber resilience, especially in the wake of increasingly disruptive cyber-attacks. This has seen vessel operators increasingly adopt Maritime Security Operation Centers (M-SOCs), an action in line with one of the cyber resilience engineering techniques known as adaptive response, whose purpose is to optimize the ability to respond promptly to attacks. This research sought to investigate the domain-specific human factors that influence the adaptive response capabilities of M-SOC analysts to vessel cyber threats. Through collecting interview data and subsequent thematic analysis informed by grounded theory, cyber awareness of both crew onboard and vessel operators emerged as a pressing domain-specific challenge impacting M-SOC analysts' adaptive response. The key takeaway from this study is that vessel operators remain pivotal in supporting the M-SOC analysts' adaptive response processes through resource allocation towards operational technology (OT) monitoring and cyber personnel staffing onboard the vessels., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
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37. Environmental factors have stronger effects than biotic processes in patterns of intertidal populations along the southeast coast of Brazil.
- Author
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Cordeiro CAMM, Pardal A, Giménez L, Ciotti ÁM, Jenkins SR, Burrows MT, Williams GA, and Christofoletti RA
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- Brazil, Animals, Environmental Monitoring, Gastropoda physiology, Population Dynamics, Biodiversity, Temperature, Ecosystem
- Abstract
Rocky shore communities are shaped by complex interactions among environmental drivers and a range of biological processes. Here, we investigated the importance of abiotic and biotic drivers on the population structure of key rocky intertidal species at 62 sites, spanning ∼50% of the Brazilian rocky shoreline (i.e., ∼500 km). Large-scale population patterns were generally explained by differences in ocean temperature and wave exposure. For the gastropod species Lottia subrugosa, differences at smaller scales (i.e., 0.1-1 km) were better explained by other abiotic influences such as freshwater discharge and substrate roughness. Based on the general population patterns of intertidal species identified, three main oceanographic groups were observed: a cold-oligotrophic grouping at northern sites (Lakes sub-region), a eutrophic group associated with large estuaries and urban zones (Santos and Guanabara bays); and a transitional warm-water group found between the two more productive areas. Larger individuals of Stramonita brasiliensis, L. subrugosa and Echinolittorina lineolata were generally found in the cold-oligotrophic system (i.e., upwelling region), while small suspension feeders dominate the warm-eutrophic systems. Evidence of bottom-up regulation was not observed, and top-down regulation effects were only observed between the whelk S. brasiliensis and its mussel prey Pernaperna. Environmental drivers as compared to biotic interactions, therefore, play a key role determining the population structure of multiple intertidal species, across a range of spatial scales along the SW Atlantic shores., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
- Published
- 2024
- Full Text
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38. Benthic and fish community composition on mesophotic reefs in Grand Cayman.
- Author
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Le Gall L, Johnson JV, Chequer A, Doherty ML, and Goodbody-Gringley G
- Subjects
- Animals, Biodiversity, Biomass, Ecosystem, Porifera classification, Porifera physiology, Seaweed genetics, Seaweed physiology, Caribbean Region, Coral Reefs, Fishes
- Abstract
Mesophotic Coral Ecosystems (MCEs) represent unique ecological habitats that range from 30 to 150 m deep, harbouring phylogenetically distinct species and offering refuge for many taxa during times of environmental stress. Yet owing to inaccessibility of ecosystems at these depths, most MCEs remain unexplored, with quantifications of ecological communities in these habitats lacking across many regions. Here, using open- and closed-circuit technical diving, we quantified benthic and fish community composition at four mesophotic reef sites (45 m depth) in Grand Cayman. We show significant differences in benthic community composition over a small spatial scale driven by disparate coverage of sponges, crustose coralline algae, and sand/rubble, yet consistent patterns of macroalgal dominance representing >50% coverage at each site and low hard coral cover at an average of 2.4%. Reef fish species richness, biomass, and density was consistent across sites, however the relative contribution of individual species to community composition differed significantly. Macrocarnivores were found to be the dominant contributors to biomass, with invertivores the most speciose, and omnivores and planktivores at the highest densities, consistent with previous descriptions of mesophotic fish assemblages in other regions. Similarly, the low hard coral cover and high macroalgae and sponge cover of the benthic communities also appear ecologically similar to several described mesophotic reefs yet is not uniform across the Caribbean. The ecological organisation of Grand Cayman's MCEs may result from a variety of factors such as isolation from other major land masses, geology, local geography, and anthropogenic activity at both the local and global scale and highlight the importance of continued exploration and documentation of MCE communities., Competing Interests: The authors declare that they have no competing interests., (© 2024 Le Gall et al.)
- Published
- 2024
- Full Text
- View/download PDF
39. "Jail isn't the answer for these inmates": how to respond to methamphetamine use in prisons.
- Author
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Ricciardelli R, Johnston MS, Maier K, and Ferguson L
- Subjects
- Humans, Male, Female, Adult, Manitoba, Middle Aged, Surveys and Questionnaires, Methamphetamine adverse effects, Prisons, Amphetamine-Related Disorders epidemiology, Amphetamine-Related Disorders psychology, Prisoners psychology
- Abstract
Purpose: The correctional system continues to face challenges with responding to and managing methamphetamine use among incarcerated individuals. This study aims to uncover what resources and policies could better help correctional workers deal with these challenges. The authors also examined methamphetamine's impact on correctional work and staff well-being., Design/methodology/approach: An online survey was distributed to correctional workers ( n = 269) in Manitoba, Canada, featuring questions about their experiences related to methamphetamine use in populations under their care, what supports are needed to adequately address the concern, and the potential effects on self and their occupational responsibilities. Using NVivo software, survey responses were analysed using an emergent theme approach., Findings: Correctional workers believed policies and protocols for managing methamphetamine use and withdrawal are currently inadequate. Correctional workers reported having monthly contact with incarcerated individuals experiencing methamphetamine withdrawal, posing safety concerns to them and other incarcerated individuals. Respondents proposed more education and training on managing incarcerated people withdrawing from methamphetamines, related to the symptoms of use and withdrawal and how to support persons detoxing. Increased human and material resources were reported as being needed (e.g. more nurses onsite and better screening devices). Respondents also desired more medical intervention, safe living spaces for methamphetamine users and programming to support addiction., Originality/value: The current study unpacks correctional workers' perspectives, support desires and their experiences managing methamphetamine use amongst incarcerated people. The authors discuss the required knowledge to respond to gaps in prison living, re-entry and related policy needs., (© Emerald Publishing Limited.)
- Published
- 2024
- Full Text
- View/download PDF
40. Genomic architecture and population structure of Boreogadus saida from Canadian waters.
- Author
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Bringloe TT, Bourret A, Cote D, Marie-Julie R, Herbig J, Robert D, Geoffroy M, and Parent GJ
- Subjects
- Canada, Animals, Arctic Regions, Gadiformes genetics, Genetics, Population, Genomics methods, Genome, Chromosome Inversion genetics, Hybridization, Genetic, Male, Female, Polymorphism, Single Nucleotide
- Abstract
The polar cod, Boreogadus saida, is an abundant and ubiquitous forage fish and a crucial link in Arctic marine trophic dynamics. Our objective was to unravel layers of genomic structure in B. saida from Canadian waters, specifically screening for potential hybridization with the Arctic cod, Arctogadus glacialis, large chromosomal inversions, and sex-linked regions, prior to interpreting population structure. Our analysis of 53,384 SNPs in 522 individuals revealed hybridization and introgression between A. glacialis and B. saida. Subsequent population level analyses of B. saida using 12,305 SNPs in 511 individuals revealed three large (ca. 7.4-16.1 Mbp) chromosomal inversions, and a 2 Mbp region featuring sex-linked loci. We showcase population structuring across the Western and Eastern North American Arctic, and subarctic regions ranging from the Hudson Bay to the Canadian Atlantic maritime provinces. Genomic signal for the inferred population structure was highly aggregated into a handful of SNPs (13.8%), pointing to potentially important adaptive evolution across the Canadian range. Our study provides a high-resolution perspective on the genomic structure of B. saida, providing a foundation for work that could be expanded to the entire circumpolar range for the species., (© 2024. Crown.)
- Published
- 2024
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41. Examining fish scale biomineral from Atlantic salmon populations.
- Author
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Tray E, Brophy D, de Eyto E, Ó'Maoileidigh N, Sheehan T, Bradbury I, and Crowley QG
- Abstract
Fish scale microchemistry can be used to make life-history inferences, although ecological studies examining scale composition are relatively rare. Salmon scales have an external layer of calcium phosphate hydroxyl apatite (HAP). The structure, hardness, and calcium content of this layer have been shown to vary within and between species. This variation may lead to misinterpretation of trace element profiles. This study uses backscatter scanning electron microscopy with electron dispersive spectrometry to compare scales from salmon populations and to present a more detailed analysis of scale HAP than was previously available. Our findings extend the range of salmon populations for which HAP Ca is available and confirm previous findings that the HAP Ca is relatively invariable within this species., (© 2024 The Author(s). Journal of Fish Biology published by John Wiley & Sons Ltd on behalf of Fisheries Society of the British Isles.)
- Published
- 2024
- Full Text
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42. Seasonal metabolic dynamics of microeukaryotic plankton: a year-long metatranscriptomic study in a temperate sea.
- Author
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Perneel M, Lagaisse R, Mortelmans J, Maere S, and Hablützel PI
- Subjects
- North Sea, Ecosystem, Seawater microbiology, Dinoflagellida genetics, Dinoflagellida metabolism, Dinoflagellida growth & development, Diatoms genetics, Diatoms metabolism, Diatoms classification, Diatoms growth & development, Transcriptome, Gene Expression Profiling, Metagenomics, Seasons, Plankton genetics, Plankton metabolism, Plankton classification
- Abstract
Seasonal fluctuations profoundly affect marine microeukaryotic plankton composition and metabolism, but accurately tracking these changes has been a long-standing challenge. In this study, we present a year-long metatranscriptomic data set from the Southern Bight of the North Sea, shedding light on the seasonal dynamics in temperate plankton ecosystems. We observe distinct shifts in active plankton species and their metabolic processes in response to seasonal changes. We characterized the metabolic signatures of different seasonal phases in detail, thereby revealing the metabolic versatility of dinoflagellates, the heterotrophic dietary strategy of Phaeocystis during its late-stage blooms, and stark variations in summer and fall diatom abundance and metabolic activity across nearby sampling stations. Our data illuminate the varied contributions of microeukaryotic taxa to biomass production and nutrient cycling at different times of the year and allow delineation of their ecological niches., Importance: Ecosystem composition and metabolic functions of temperate marine microeukaryote plankton are strongly influenced by seasonal dynamics. Although monitoring of species composition of microeukaryotes has expanded recently, few methods also contain seasonally resolved information on ecosystem functioning. We generated a year-long spatially resolved metatranscriptomic data set to assess seasonal dynamics of microeukaryote species and their associated metabolic functions in the Southern Bight of the North Sea. Our study underscores the potential of metatranscriptomics as a powerful tool for advancing our understanding of marine ecosystem functionality and resilience in response to environmental changes, emphasizing its potential in continuous marine ecosystem monitoring to enhance our ecological understanding of the ocean's eukaryotic microbiome., Competing Interests: The authors declare no conflict of interest.
- Published
- 2024
- Full Text
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43. Valorization of Baltic Sea farmed blue mussels: Chemical profiling and prebiotic potential for nutraceutical and functional food development.
- Author
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Adler I, Kotta J, Robal M, Humayun S, Vene K, and Tuvikene R
- Abstract
The severe eutrophication of the Baltic Sea requires mussel ( Mytilus spp.) farming to remove nutrients, but farming in a low salinity environment results in smaller mussels that require value enhancement to be economically viable. This study evaluates the biomass valorisation of smaller Baltic mussels, focusing on the extraction of oil, protein and glycogen. It analyses the amino acid profiles, oil and fatty acid contents and glycogen levels of the mussels, as well as their prebiotic properties on beneficial gut bacteria. In addition, the study improves the extraction of bioactive compounds through enzymatic hydrolysis. Results indicate significant seasonal differences, with summer mussels having higher meat and lower ash content, and a rich content of essential fatty acids, particularly omega-3, and amino acids, underscoring the mussels' sustainability as a food source. The enzymatically treated biomass exhibited notable prebiotic activity, proposing health-promoting benefits. The study underscores the valorization of Baltic mussel biomass, highlighting its role in health, nutrition, and environmental sustainability., Competing Interests: The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Rando Tuvikene reports financial support was provided by Estonian Research Council. Jonne Kotta reports financial support was provided by Horizon Europe. Jonne Kotta reports financial support was provided by European Maritime and Fisheries Fund. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Authors. Published by Elsevier Ltd.)
- Published
- 2024
- Full Text
- View/download PDF
44. Determinants of riverine migration success by Atlantic salmon (Salmo salar) smolts from rivers across the UK and Ireland.
- Author
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Rodger JR, Guthrie J, Honkanen HM, Lothian AJ, Lilly J, Walters M, Miller R, Hawkins L, Reeve A, Ribbens J, Henderson J, Parke D, Green A, Shields BA, Ramsden P, Fletcher M, Kettle-White A, Shaw B, Burns S, Laughton R, Conroy C, Daphne C, Williams K, Robertson S, Bean CW, Del Villar D, Waters C, Rosell R, Cotter D, Smith M, Maoiléidigh NÓ, Kennedy R, and Adams CE
- Abstract
There is some evidence that the river migration success of Atlantic salmon smolts, on their first migration to sea, varies both spatially and temporally. However, we have only a poor understanding of what may be driving this variation. In this study, we used acoustic telemetry to quantify the spatial and temporal variations in river migration success in Atlantic salmon smolts on their first migration to sea. In total 4120 Atlantic salmon smolts migrating through 22 rivers in Scotland, England, Ireland, and Northern Ireland over multiple years were included in the study. Individuals were defined as successful migrants if detected leaving the river to enter marine waters. The results show significant temporal (up to 4 years) and spatial (river) variations in migration success, with overall between-river migration success varying from 3.4% to 97.0% and between years from 3.4% and 61.0%. Temporal variation in migration success was river specific, with some rivers being more temporally stable (exhibiting little variation between years) than others. Across all rivers and years, individual migration success was predicted positively by body condition and negatively by tag burden. The rate of migration success for a population (migration success standardized to a common river distance [proportion km
-1 ]) was predicted by a number of environmental factors. The proportion of river catchment that comprised wetland and woodland positively predicted migration success, whereas the proportion of grassland and peatland in a catchment negatively predicted the rate of migration success. Although the mechanisms through which these effects may be operating were not directly examined in this study, we discuss some potential routes through which they may occur., (© 2024 The Author(s). Journal of Fish Biology published by John Wiley & Sons Ltd on behalf of Fisheries Society of the British Isles.)- Published
- 2024
- Full Text
- View/download PDF
45. Environmental DNA Reveals the Impact of Submarine Groundwater Discharge on the Spatial Variability of Coastal Fish Diversity.
- Author
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Nhat NH, Saito M, Onodera SI, Hamada M, Hyodo F, and Nagare H
- Abstract
Submarine groundwater discharge (SGD) has recently been recognized as an influential factor in coastal ecosystems; however, little research has been conducted on its effects on coastal fish diversity. To investigate the relationship between SGD and fish diversity, we conducted a survey at the coastal island scale using the environmental DNA (eDNA) method. Our findings indicate that fish species richness and functional richness peak at stations with high SGD. Environmental variables, such as salinity, dissolved inorganic nitrogen (DIN) concentration, and SGD, significantly influence fish diversity. Carnivore fish richness was negatively correlated with salinity, while planktivore fish richness was positively correlated. Additionally, SGD and DIN concentrations were found to be crucial in shaping omnivorous and pelagic communities, respectively. This study highlights the role of SGD in enhancing nutrient conditions favorable for diverse fish communities and demonstrates the effectiveness of eDNA metabarcoding for rapid marine biodiversity assessment. These findings provide valuable insights for coastal ecosystem monitoring and management.
- Published
- 2024
- Full Text
- View/download PDF
46. Trace element concentrations in common dolphins (Delphinus delphis) in the Celtic Seas ecoregion: Interelement relationships and effects of life history and health status.
- Author
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Gosnell O, McHugh B, Minto C, McGovern E, Rogan E, Caurant F, Pierce GJ, Das K, O'Donovan J, Emerit A, and Murphy S
- Subjects
- Animals, Dolphins metabolism, Male, Female, Health Status, Liver metabolism, Liver chemistry, Mercury metabolism, Oceans and Seas, Trace Elements analysis, Trace Elements metabolism, Water Pollutants, Chemical analysis, Environmental Monitoring
- Abstract
Given the increased extraction of trace elements for use by new and emerging technologies, monitoring the environmental fate and potential effects of these compounds within the aquatic environment has never been more critical. Here, hepatic trace element concentrations were assessed in a key sentinel predator, the common dolphin (Delphinus delphis), using a long-term dataset. Variation in concentrations were assessed in relation to other elements, time period, decomposition state, sex, age, total body length, sexual maturity and nutritional status, and cause of death. Additionally, mercury toxicity thresholds for evaluating risk were reviewed and employed. Concentrations of elements which bioaccumulate, THg, MeHg, Cd, and Pb, in addition to Se and V, were strongly correlated with age, and/or body length. An association was observed between Zn concentrations and disease status, with significantly higher concentrations measured in individuals that died from infectious disease, compared to other causes. Strong inter-elemental relationships were detected, namely between Hg and Se, MeHg and Se, Cd and Se, and Cu and Zn. While THg:Se molar ratio values were observed to increase with age and body length, approaching equimolarity. THg was largely comprised of inorganic Hg in older individuals, potentially bound to Se, therefore the effects from THg toxicity may possibly be less important than originally assumed. In contrast, higher MeHg:Hg ratio values were reported in juveniles, suggesting a poorer efficiency in demethylation and a higher sensitivity. The generation of data on proportions of hepatic MeHg and inorganic Hg is highly informative to both future toxicity threshold assessments within pollutant indicator assessments, and to understanding the ultimate fate of mercury in the marine web., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
47. Investigating local trawl fishing as a source of plastic beach litter.
- Author
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Allison NL, Dale AC, Narayanaswamy BE, and Turrell WR
- Subjects
- Scotland, Water Pollutants, Chemical analysis, Plastics analysis, Fisheries, Environmental Monitoring, Bathing Beaches
- Abstract
This paper uses a particle tracking model to simulate the distribution of fishing-related marine-sourced plastic litter from demersal trawling activities along the Atlantic coast of Scotland. The modelled fishing litter dispersed widely across the region, with ∼50% of the particles beaching along the northwestern Scottish coast after a year-long simulation. The model was tuned using observations of beached litter loadings along the same coastline to estimate the annual input, by mass, of small (<1 kg) plastic litter. Model results suggest that between 107 g and 280 g of small fishing-related litter enters the ocean per hour of fishing, resulting in an estimated 234 t to 614 t of small fishing-related litter entering the ocean annually on the Scottish west coast. These results suggest that fishing on the Atlantic coast of Scotland may be a significant source of marine plastic. However, more modelled and observational data are required to reduce uncertainty., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
48. Direct observational evidence of strong CO 2 uptake in the Southern Ocean.
- Author
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Dong Y, Bakker DCE, Bell TG, Yang M, Landschützer P, Hauck J, Rödenbeck C, Kitidis V, Bushinsky SM, and Liss PS
- Abstract
The Southern Ocean is the primary region for the uptake of anthropogenic carbon dioxide (CO
2 ) and is, therefore, crucial for Earth's climate. However, the Southern Ocean CO2 flux estimates reveal substantial uncertainties and lack direct validation. Using seven independent and directly measured air-sea CO2 flux datasets, we identify a 25% stronger CO2 uptake in the Southern Ocean than shipboard dataset-based flux estimates. Accounting for upper ocean temperature gradients and insufficient temporal resolution of flux products can bridge this flux gap. The gas transfer velocity parameterization is not the main reason for the flux disagreement. The profiling float data-based flux products and biogeochemistry models considerably underestimate the observed CO2 uptake, which may be due to the lack of representation of small-scale high-flux events. Our study suggests that the Southern Ocean may take up more CO2 than previously recognized, and that temperature corrections should be considered, and a higher resolution is needed in data-based bulk flux estimates.- Published
- 2024
- Full Text
- View/download PDF
49. AQUA-GAPS/MONET-Derived Concentrations and Trends of PAHs and Polycyclic Musks across Global Waters.
- Author
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Lohmann R, Vrana B, Muir D, Smedes F, Sobotka J, Zeng EY, Bao LJ, Allan IJ, Astrahan P, Bidleman T, Crowley D, Dykyi E, Estoppey N, Fillmann G, Jantunen L, Kaserzon S, Maruya KA, McHugh B, Newman B, Prats RM, Tsapakis M, Tysklind M, van Drooge BL, and Wong CS
- Abstract
Polycyclic aromatic hydrocarbons (PAHs), released from petrogenic, pyrogenic or diagenetic sources (degradation of wood materials), are of global concern due to their adverse effects, and potential for long-range transport. While dissolved PAHs have been frequently reported in the literature, there has been no consistent approach of sampling across water bodies. Passive samplers from the AQUA/GAPS-MONET initiative were deployed at 46 sites (28 marine and 18 freshwater), and analyzed for 28 PAHs and six polycyclic musks (PCMs) centrally. Freely dissolved PAH concentrations were dominated by phenanthrene (mean concentration 1500 pg L
-1 ; median 530 pg L-1 ) and other low molecular weight compounds. Greatest concentrations of phenanthrene, fluoranthene, and pyrene were typically from the same sites, mostly in Europe and North America. Of the PCMs, only galaxolide (72% of samples) and tonalide (61%) were regularly detected, and were significantly cross-correlated. Benchmarking of PAHs relative to penta- and hexachlorobenzene confirmed that the most remote sites (Arctic, Antarctic, and mountain lakes) displayed below average PAH concentrations. Concentrations of 11 of 28 PAHs, galaxolide and tonalide were positively correlated ( P < 0.05) with population density within a radius of 5 km of the sampling site. Characteristic PAH ratios gave conflicting results, likely reflecting multiple PAH sources and postemission changes.- Published
- 2024
- Full Text
- View/download PDF
50. Detection of Multiple Human Viruses, including Mpox, Using a Wastewater Surveillance Approach in Brazil.
- Author
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Calabria de Araujo J, Carvalho APA, Leal CD, Natividade M, Borin M, Guerra A, Carobin N, Sabino A, Almada M, Costa MCM, Saia F, Frutuoso LV, Iani FCM, Adelino T, Fonseca V, Giovanetti M, and Alcantara LCJ
- Abstract
Sewage surveillance can be used as an effective complementary tool for detecting pathogens in local communities, providing insights into emerging threats and aiding in the monitoring of outbreaks. In this study using qPCR and whole genomic sewage surveillance, we detected the Mpox virus along with other viruses, in municipal and hospital wastewaters in Belo Horizonte, Brazil over a 9-month period (from July 2022 until March 2023). MPXV DNA detection rates varied in our study, with 19.6% (11 out of 56 samples) detected through the hybrid capture method of whole-genome sequencing and 20% (12 out of 60 samples) through qPCR. In hospital wastewaters, the detection rate was higher, at 40% (12 out of 30 samples) compared to 13.3% (4 out of 30 samples) in municipal wastewaters. This variation could be attributed to the relatively low number of MPXV cases reported in the city, which ranged from 106 to 341 cases during the study period, and the dilution effects, given that each of the two wastewater treatment plants (WWTP) investigated serves approximately 1.1 million inhabitants. Additionally, nine other virus families were identified in both hospitals and municipal wastewaters, including Adenoviridade, Astroviridae, Caliciviridae, Picornaviridade, Polyomaviridae, Coronaviridae (which includes SARS-CoV-2), Herspesviridae, Papillomaviridae and Flaviviridae (notably including Dengue). These findings underscore the potential of genomic sewage surveillance as a robust public health tool for monitoring a wide range of viruses circulating in both community and hospitals environments, including MPXV.
- Published
- 2024
- Full Text
- View/download PDF
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